HEADER TRANSFERASE 05-AUG-13 4M2M TITLE CRYSTAL STRUCTURE OF PLP-DEPENDENT CYCLASE ORFR IN COMPLEX WITH PLP-L- TITLE 2 ARG COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LAVENDULAE; SOURCE 3 ORGANISM_TAXID: 58340; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLASE, PLP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHANG,Y.C.LIU,S.Y.LYU,C.C.WU,T.L.LI REVDAT 3 08-NOV-23 4M2M 1 REMARK SEQADV LINK REVDAT 2 18-JUL-18 4M2M 1 REMARK REVDAT 1 18-JUN-14 4M2M 0 JRNL AUTH C.Y.CHANG,S.Y.LYU,Y.C.LIU,N.S.HSU,C.C.WU,C.F.TANG,K.H.LIN, JRNL AUTH 2 J.Y.HO,C.J.WU,M.D.TSAI,T.L.LI JRNL TITL BIOSYNTHESIS OF STREPTOLIDINE INVOLVED TWO UNEXPECTED JRNL TITL 2 INTERMEDIATES PRODUCED BY A DIHYDROXYLASE AND A CYCLASE JRNL TITL 3 THROUGH UNUSUAL MECHANISMS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 1943 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 24505011 JRNL DOI 10.1002/ANIE.201307989 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 55750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 39.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2973 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4053 ; 1.468 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 6.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;27.650 ;21.791 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;12.989 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;18.011 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4M2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4M2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PROPANE, 1M AMMONIUM REMARK 280 CITRATE TRIBASIC, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.48050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.22800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.22800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.72075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.22800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.22800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.24025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.22800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.22800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.72075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.22800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.22800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 12.24025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.48050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.48050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 953 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 216 O HOH A 1005 1.91 REMARK 500 CB PRO A 327 O HOH A 1023 1.95 REMARK 500 NE ARG A 369 O HOH A 1027 1.96 REMARK 500 O HOH A 652 O HOH A 1010 1.97 REMARK 500 O HOH A 794 O HOH A 1027 1.98 REMARK 500 NH1 ARG A 136 O HOH A 998 2.01 REMARK 500 NH2 ARG A 84 O HOH A 990 2.11 REMARK 500 O HOH A 1005 O HOH A 1006 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 329 O HOH A 909 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -154.16 -98.03 REMARK 500 THR A 254 -55.83 -133.79 REMARK 500 LEU A 256 -66.66 69.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M23 RELATED DB: PDB REMARK 900 RELATED ID: 4M25 RELATED DB: PDB REMARK 900 RELATED ID: 4M26 RELATED DB: PDB REMARK 900 RELATED ID: 4M27 RELATED DB: PDB REMARK 900 RELATED ID: 4M2C RELATED DB: PDB REMARK 900 RELATED ID: 4M2E RELATED DB: PDB REMARK 900 RELATED ID: 4M2F RELATED DB: PDB REMARK 900 RELATED ID: 4M2G RELATED DB: PDB REMARK 900 RELATED ID: 4M2I RELATED DB: PDB REMARK 900 RELATED ID: 4M2J RELATED DB: PDB REMARK 900 RELATED ID: 4M2K RELATED DB: PDB DBREF 4M2M A 1 386 UNP G9MBV4 G9MBV4_STRLA 1 386 SEQADV 4M2M MET A -19 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M GLY A -18 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M SER A -17 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M SER A -16 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -15 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -14 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -13 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -12 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -11 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A -10 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M SER A -9 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M SER A -8 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M GLY A -7 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M LEU A -6 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M VAL A -5 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M PRO A -4 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M ARG A -3 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M GLY A -2 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M SER A -1 UNP G9MBV4 EXPRESSION TAG SEQADV 4M2M HIS A 0 UNP G9MBV4 EXPRESSION TAG SEQRES 1 A 406 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 406 LEU VAL PRO ARG GLY SER HIS MET SER SER LEU ARG PRO SEQRES 3 A 406 ARG ARG GLU ASP PRO PRO VAL LEU GLU GLU TRP TYR ARG SEQRES 4 A 406 ARG HIS LEU GLY PRO ASP ILE HIS ASP ILE SER SER SER SEQRES 5 A 406 GLY VAL HIS PRO TYR SER PHE ALA GLU ILE ARG ASP VAL SEQRES 6 A 406 CYS ARG ILE PRO ALA ALA ASP LEU ASP ALA VAL VAL MET SEQRES 7 A 406 ASP ASP SER VAL SER GLN GLY GLY GLU GLY VAL ARG ARG SEQRES 8 A 406 ALA ILE ALA ASP ARG TYR ALA GLY GLY ASP ALA ASP ARG SEQRES 9 A 406 VAL LEU VAL THR HIS GLY SER SER GLU ALA ILE ALA LEU SEQRES 10 A 406 THR LEU ASN ALA LEU LEU HIS ARG GLY ASP ARG VAL VAL SEQRES 11 A 406 VAL GLN GLU GLY ILE TYR HIS SER LEU GLY HIS TYR PRO SEQRES 12 A 406 ARG ALA ALA GLY CYS ASP VAL ALA VAL LEU PRO GLY ARG SEQRES 13 A 406 ALA VAL ARG ASP GLY GLU ILE ASP PRO ASP VAL LEU ALA SEQRES 14 A 406 GLY LEU VAL THR PRO GLY THR ALA ALA VAL ILE VAL ASN SEQRES 15 A 406 PHE PRO HIS ASN PRO THR GLY VAL THR LEU SER PRO GLN SEQRES 16 A 406 GLY LEU ARG ALA LEU LYS GLU ARG THR ALA ALA THR GLY SEQRES 17 A 406 ALA VAL LEU VAL TRP ASP ALA ALA THR ALA GLU ILE ALA SEQRES 18 A 406 HIS ARG TRP GLU VAL LEU ALA ASP PRO GLY ALA ASP GLY SEQRES 19 A 406 GLY ASP THR VAL SER TYR GLY THR LEU SER LYS THR PHE SEQRES 20 A 406 GLY LEU PRO GLY LEU ARG VAL GLY TRP ALA VAL ALA PRO SEQRES 21 A 406 LYS GLU LEU LEU THR ALA THR PHE PRO LEU ARG ASP ARG SEQRES 22 A 406 THR THR LEU PHE LEU SER PRO LEU VAL GLU LEU VAL ALA SEQRES 23 A 406 GLU ARG ALA VAL ARG HIS ALA ASP GLU LEU ILE GLY ALA SEQRES 24 A 406 ARG ALA ALA GLU ALA ARG HIS ASN LEU ALA HIS LEU THR SEQRES 25 A 406 GLY TRP MET ALA ALA HIS GLU GLU LEU VAL ARG TRP THR SEQRES 26 A 406 PRO PRO GLU GLY GLY VAL CYS ALA LEU PRO VAL PHE ARG SEQRES 27 A 406 GLU LEU GLU ARG ALA ALA ALA GLY PRO GLN GLU VAL GLU SEQRES 28 A 406 ARG PHE CYS LEU GLU LEU LEU GLU ARG HIS ARG THR LEU SEQRES 29 A 406 LEU VAL PRO GLY THR ALA PHE GLY ALA PRO HIS GLY ALA SEQRES 30 A 406 ARG LEU GLY PHE GLY GLY PRO GLN GLU ASP PHE ARG ALA SEQRES 31 A 406 GLY LEU ASP GLY LEU SER ARG PHE LEU ARG GLU ARG ALA SEQRES 32 A 406 ALA GLY ARG HET PLP A 401 15 HET ARG A 402 12 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM ARG ARGININE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 ARG C6 H15 N4 O2 1+ FORMUL 4 HOH *530(H2 O) HELIX 1 1 PRO A 12 LEU A 22 1 11 HELIX 2 2 SER A 38 CYS A 46 1 9 HELIX 3 3 PRO A 49 ALA A 55 1 7 HELIX 4 4 GLY A 66 ALA A 78 1 13 HELIX 5 5 ASP A 81 ASP A 83 5 3 HELIX 6 6 HIS A 89 LEU A 103 1 15 HELIX 7 7 TYR A 116 ALA A 126 1 11 HELIX 8 8 PRO A 134 ARG A 136 5 3 HELIX 9 9 ASP A 144 VAL A 152 1 9 HELIX 10 10 SER A 173 GLY A 188 1 16 HELIX 11 11 ASP A 209 GLY A 214 5 6 HELIX 12 12 LEU A 229 ARG A 233 5 5 HELIX 13 13 PRO A 240 THR A 247 1 8 HELIX 14 14 THR A 247 ARG A 253 1 7 HELIX 15 15 SER A 259 HIS A 272 1 14 HELIX 16 16 HIS A 272 HIS A 298 1 27 HELIX 17 17 ARG A 318 ALA A 323 1 6 HELIX 18 18 GLN A 328 ARG A 342 1 15 HELIX 19 19 THR A 349 GLY A 352 5 4 HELIX 20 20 PRO A 364 ALA A 384 1 21 SHEET 1 A 2 HIS A 27 ASP A 28 0 SHEET 2 A 2 THR A 343 LEU A 344 1 O LEU A 344 N HIS A 27 SHEET 1 B 7 VAL A 85 THR A 88 0 SHEET 2 B 7 GLY A 235 VAL A 238 -1 O GLY A 235 N THR A 88 SHEET 3 B 7 VAL A 218 THR A 222 -1 N GLY A 221 O TRP A 236 SHEET 4 B 7 VAL A 190 ASP A 194 1 N TRP A 193 O VAL A 218 SHEET 5 B 7 ALA A 158 ASN A 162 1 N VAL A 159 O VAL A 192 SHEET 6 B 7 ARG A 108 GLN A 112 1 N VAL A 110 O ILE A 160 SHEET 7 B 7 ASP A 129 LEU A 133 1 O ALA A 131 N VAL A 111 SHEET 1 C 2 VAL A 138 ARG A 139 0 SHEET 2 C 2 GLU A 142 ILE A 143 -1 O GLU A 142 N ARG A 139 SHEET 1 D 2 VAL A 302 ARG A 303 0 SHEET 2 D 2 VAL A 316 PHE A 317 -1 O VAL A 316 N ARG A 303 SHEET 1 E 3 CYS A 312 ALA A 313 0 SHEET 2 E 3 ALA A 357 GLY A 360 -1 O LEU A 359 N ALA A 313 SHEET 3 E 3 VAL A 346 PRO A 347 -1 N VAL A 346 O ARG A 358 LINK C4A PLP A 401 N ARG A 402 1555 1555 1.33 CISPEP 1 PHE A 163 PRO A 164 0 -3.67 CISPEP 2 ASN A 166 PRO A 167 0 15.99 SITE 1 AC1 14 GLY A 90 SER A 91 SER A 92 TYR A 116 SITE 2 AC1 14 ASN A 162 ASN A 166 ASP A 194 THR A 222 SITE 3 AC1 14 SER A 224 LYS A 225 ARG A 233 ARG A 402 SITE 4 AC1 14 HOH A 577 HOH A 594 SITE 1 AC2 14 LEU A 14 GLU A 15 TYR A 18 SER A 32 SITE 2 AC2 14 ASP A 60 TYR A 116 ASN A 166 LYS A 225 SITE 3 AC2 14 PHE A 257 ARG A 358 PLP A 401 HOH A 501 SITE 4 AC2 14 HOH A 563 HOH A 583 CRYST1 138.456 138.456 48.961 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020424 0.00000