data_4M3J # _entry.id 4M3J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4M3J RCSB RCSB081420 WWPDB D_1000081420 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4M3K _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4M3J _pdbx_database_status.recvd_initial_deposition_date 2013-08-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pain, C.' 1 'Kerff, F.' 2 'Herman, R.' 3 'Sauvage, E.' 4 'Preumont, S.' 5 'Charlier, P.' 6 'Dumoulin, M.' 7 # _citation.id primary _citation.title 'Probing the mechanism of aggregation of polyQ model proteins with camelid heavy-chain antibody fragments' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pain, C.' 1 primary 'Cosolo, A.' 2 primary 'Preumont, S.' 3 primary 'Scarafone, N.' 4 primary 'Thorn, D.' 5 primary 'Herman, R.' 6 primary 'Spiegel, H.' 7 primary 'Pardon, E.' 8 primary 'Matagne, A.' 9 primary 'Charlier, P.' 10 primary 'Steyaert, J.' 11 primary 'Damblon, C.' 12 primary 'Kerff, F.' 13 primary 'Esposito, G.' 14 primary 'Dumoulin, M.' 15 # _cell.entry_id 4M3J _cell.length_a 53.562 _cell.length_b 54.615 _cell.length_c 83.445 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4M3J _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Camelid heavy-chain antibody variable fragment cAb-H7S' 13524.937 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QVQLQESGGGLVQPGGSLRLSCAASGSISSITTMGWYRQDPGKGRELVALINSVGDTTYAGSVKGRFTISRDNAKNTVYL EMSSLKPEDTAVYYCNAFMSTNSGRTGSFWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;QVQLQESGGGLVQPGGSLRLSCAASGSISSITTMGWYRQDPGKGRELVALINSVGDTTYAGSVKGRFTISRDNAKNTVYL EMSSLKPEDTAVYYCNAFMSTNSGRTGSFWGQGTQVTVSSHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 GLN n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 SER n 1 28 ILE n 1 29 SER n 1 30 SER n 1 31 ILE n 1 32 THR n 1 33 THR n 1 34 MET n 1 35 GLY n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 ASP n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 ARG n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 ALA n 1 50 LEU n 1 51 ILE n 1 52 ASN n 1 53 SER n 1 54 VAL n 1 55 GLY n 1 56 ASP n 1 57 THR n 1 58 THR n 1 59 TYR n 1 60 ALA n 1 61 GLY n 1 62 SER n 1 63 VAL n 1 64 LYS n 1 65 GLY n 1 66 ARG n 1 67 PHE n 1 68 THR n 1 69 ILE n 1 70 SER n 1 71 ARG n 1 72 ASP n 1 73 ASN n 1 74 ALA n 1 75 LYS n 1 76 ASN n 1 77 THR n 1 78 VAL n 1 79 TYR n 1 80 LEU n 1 81 GLU n 1 82 MET n 1 83 SER n 1 84 SER n 1 85 LEU n 1 86 LYS n 1 87 PRO n 1 88 GLU n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 TYR n 1 94 TYR n 1 95 CYS n 1 96 ASN n 1 97 ALA n 1 98 PHE n 1 99 MET n 1 100 SER n 1 101 THR n 1 102 ASN n 1 103 SER n 1 104 GLY n 1 105 ARG n 1 106 THR n 1 107 GLY n 1 108 SER n 1 109 PHE n 1 110 TRP n 1 111 GLY n 1 112 GLN n 1 113 GLY n 1 114 THR n 1 115 GLN n 1 116 VAL n 1 117 THR n 1 118 VAL n 1 119 SER n 1 120 SER n 1 121 HIS n 1 122 HIS n 1 123 HIS n 1 124 HIS n 1 125 HIS n 1 126 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMES4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4M3J _struct_ref.pdbx_db_accession 4M3J _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M3J A 1 ? 126 ? 4M3J 1 ? 126 ? 1 126 2 1 4M3J B 1 ? 126 ? 4M3J 1 ? 126 ? 1 126 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4M3J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;0.2 uL 0.2 M ammonium sulphate 0.1 M NaAc, pH 4.6, 25% PEG4000 + 0.2 uL cAb-H7S 15 mg/ml 20 mM tris, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98011 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98011 # _reflns.entry_id 4M3J _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.7 _reflns.d_resolution_high 1.95 _reflns.number_obs 18390 _reflns.number_all 18390 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 48.7 _reflns.pdbx_redundancy 6.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs 0.818 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 6.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2514 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4M3J _refine.ls_number_reflns_obs 17403 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.70 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.29 _refine.ls_R_factor_obs 0.20812 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20595 _refine.ls_R_factor_R_free 0.25213 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 941 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 44.937 _refine.aniso_B[1][1] 0.30 _refine.aniso_B[2][2] -0.16 _refine.aniso_B[3][3] -0.14 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.171 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.119 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.720 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1742 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1794 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 45.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.020 ? 1778 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.564 1.948 ? 2404 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.029 5.000 ? 232 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 38.770 23.803 ? 71 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.854 15.000 ? 288 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.450 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.097 0.200 ? 270 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 1326 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 1.999 _refine_ls_shell.number_reflns_R_work 1037 _refine_ls_shell.R_factor_R_work 0.269 _refine_ls_shell.percent_reflns_obs 90.15 _refine_ls_shell.R_factor_R_free 0.368 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1037 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4M3J _struct.title 'Structure of a single-domain camelid antibody fragment cAb-H7S specific of the BlaP beta-lactamase from Bacillus licheniformis' _struct.pdbx_descriptor 'Camelid heavy-chain antibody variable fragment cAb-H7S' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M3J _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Immunoglobulin fold, Antigen binding, beta-lactamase binding antibody, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 73 ? LYS A 75 ? ASN A 73 LYS A 75 5 ? 3 HELX_P HELX_P2 2 LYS A 86 ? THR A 90 ? LYS A 86 THR A 90 5 ? 5 HELX_P HELX_P3 3 ILE B 28 ? ILE B 31 ? ILE B 28 ILE B 31 5 ? 4 HELX_P HELX_P4 4 LYS B 86 ? THR B 90 ? LYS B 86 THR B 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 22 A CYS 95 1_555 ? ? ? ? ? ? ? 2.025 ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 22 B CYS 95 1_555 ? ? ? ? ? ? ? 2.038 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 12 ? C ? 10 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel B 10 11 ? anti-parallel B 11 12 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel C 8 9 ? anti-parallel C 9 10 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 2 ? GLY A 8 ? VAL A 2 GLY A 8 A 2 LEU A 18 ? GLY A 26 ? LEU A 18 GLY A 26 A 3 THR A 77 ? MET A 82 ? THR A 77 MET A 82 A 4 THR A 68 ? ASP A 72 ? THR A 68 ASP A 72 B 1 GLY A 10 ? VAL A 12 ? GLY A 10 VAL A 12 B 2 THR A 114 ? VAL A 118 ? THR A 114 VAL A 118 B 3 ALA A 91 ? SER A 100 ? ALA A 91 SER A 100 B 4 ILE A 31 ? GLN A 39 ? ILE A 31 GLN A 39 B 5 GLU A 46 ? ASN A 52 ? GLU A 46 ASN A 52 B 6 THR A 57 ? TYR A 59 ? THR A 57 TYR A 59 B 7 THR B 57 ? TYR B 59 ? THR B 57 TYR B 59 B 8 GLU B 46 ? ASN B 52 ? GLU B 46 ASN B 52 B 9 THR B 33 ? GLN B 39 ? THR B 33 GLN B 39 B 10 ALA B 91 ? SER B 100 ? ALA B 91 SER B 100 B 11 THR B 114 ? VAL B 118 ? THR B 114 VAL B 118 B 12 GLY B 10 ? VAL B 12 ? GLY B 10 VAL B 12 C 1 THR A 106 ? TRP A 110 ? THR A 106 TRP A 110 C 2 ALA A 91 ? SER A 100 ? ALA A 91 SER A 100 C 3 ILE A 31 ? GLN A 39 ? ILE A 31 GLN A 39 C 4 GLU A 46 ? ASN A 52 ? GLU A 46 ASN A 52 C 5 THR A 57 ? TYR A 59 ? THR A 57 TYR A 59 C 6 THR B 57 ? TYR B 59 ? THR B 57 TYR B 59 C 7 GLU B 46 ? ASN B 52 ? GLU B 46 ASN B 52 C 8 THR B 33 ? GLN B 39 ? THR B 33 GLN B 39 C 9 ALA B 91 ? SER B 100 ? ALA B 91 SER B 100 C 10 THR B 106 ? TRP B 110 ? THR B 106 TRP B 110 D 1 VAL B 2 ? SER B 7 ? VAL B 2 SER B 7 D 2 LEU B 18 ? GLY B 26 ? LEU B 18 GLY B 26 D 3 THR B 77 ? MET B 82 ? THR B 77 MET B 82 D 4 PHE B 67 ? ASP B 72 ? PHE B 67 ASP B 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 5 ? N GLN A 5 O ALA A 23 ? O ALA A 23 A 2 3 N LEU A 18 ? N LEU A 18 O MET A 82 ? O MET A 82 A 3 4 O GLU A 81 ? O GLU A 81 N THR A 68 ? N THR A 68 B 1 2 N VAL A 12 ? N VAL A 12 O THR A 117 ? O THR A 117 B 2 3 O THR A 114 ? O THR A 114 N TYR A 93 ? N TYR A 93 B 3 4 O TYR A 94 ? O TYR A 94 N TYR A 37 ? N TYR A 37 B 4 5 N TRP A 36 ? N TRP A 36 O ALA A 49 ? O ALA A 49 B 5 6 N LEU A 50 ? N LEU A 50 O THR A 58 ? O THR A 58 B 6 7 N THR A 57 ? N THR A 57 O TYR B 59 ? O TYR B 59 B 7 8 O THR B 58 ? O THR B 58 N LEU B 50 ? N LEU B 50 B 8 9 O ALA B 49 ? O ALA B 49 N TRP B 36 ? N TRP B 36 B 9 10 N THR B 33 ? N THR B 33 O PHE B 98 ? O PHE B 98 B 10 11 N TYR B 93 ? N TYR B 93 O THR B 114 ? O THR B 114 B 11 12 O THR B 117 ? O THR B 117 N GLY B 10 ? N GLY B 10 C 1 2 O GLY A 107 ? O GLY A 107 N MET A 99 ? N MET A 99 C 2 3 O TYR A 94 ? O TYR A 94 N TYR A 37 ? N TYR A 37 C 3 4 N TRP A 36 ? N TRP A 36 O ALA A 49 ? O ALA A 49 C 4 5 N LEU A 50 ? N LEU A 50 O THR A 58 ? O THR A 58 C 5 6 N THR A 57 ? N THR A 57 O TYR B 59 ? O TYR B 59 C 6 7 O THR B 58 ? O THR B 58 N LEU B 50 ? N LEU B 50 C 7 8 O ALA B 49 ? O ALA B 49 N TRP B 36 ? N TRP B 36 C 8 9 N THR B 33 ? N THR B 33 O PHE B 98 ? O PHE B 98 C 9 10 N MET B 99 ? N MET B 99 O GLY B 107 ? O GLY B 107 D 1 2 N GLN B 3 ? N GLN B 3 O SER B 25 ? O SER B 25 D 2 3 N LEU B 18 ? N LEU B 18 O MET B 82 ? O MET B 82 D 3 4 O THR B 77 ? O THR B 77 N ASP B 72 ? N ASP B 72 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 71 ? ARG A 71 . ? 1_555 ? 2 AC1 3 HOH E . ? HOH A 304 . ? 1_555 ? 3 AC1 3 LYS B 64 ? LYS B 64 . ? 1_555 ? 4 AC2 3 LYS A 64 ? LYS A 64 . ? 1_555 ? 5 AC2 3 ARG B 71 ? ARG B 71 . ? 1_555 ? 6 AC2 3 HOH F . ? HOH B 301 . ? 1_555 ? # _database_PDB_matrix.entry_id 4M3J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4M3J _atom_sites.fract_transf_matrix[1][1] 0.018670 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018310 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011984 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ASP 40 40 ? ? ? A . n A 1 41 PRO 41 41 ? ? ? A . n A 1 42 GLY 42 42 ? ? ? A . n A 1 43 LYS 43 43 ? ? ? A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 HIS 121 121 ? ? ? A . n A 1 122 HIS 122 122 ? ? ? A . n A 1 123 HIS 123 123 ? ? ? A . n A 1 124 HIS 124 124 ? ? ? A . n A 1 125 HIS 125 125 ? ? ? A . n A 1 126 HIS 126 126 ? ? ? A . n B 1 1 GLN 1 1 1 GLN GLN B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 GLN 3 3 3 GLN GLN B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 GLN 5 5 5 GLN GLN B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 SER 17 17 17 SER SER B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 ARG 19 19 19 ARG ARG B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 SER 21 21 21 SER SER B . n B 1 22 CYS 22 22 22 CYS CYS B . n B 1 23 ALA 23 23 23 ALA ALA B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 SER 25 25 25 SER SER B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 MET 34 34 34 MET MET B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 TRP 36 36 36 TRP TRP B . n B 1 37 TYR 37 37 37 TYR TYR B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 GLN 39 39 39 GLN GLN B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 GLY 42 42 42 GLY GLY B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 GLY 44 44 44 GLY GLY B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ALA 49 49 49 ALA ALA B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 ASN 52 52 52 ASN ASN B . n B 1 53 SER 53 53 53 SER SER B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 ARG 66 66 66 ARG ARG B . n B 1 67 PHE 67 67 67 PHE PHE B . n B 1 68 THR 68 68 68 THR THR B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 ALA 74 74 74 ALA ALA B . n B 1 75 LYS 75 75 75 LYS LYS B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 TYR 79 79 79 TYR TYR B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 MET 82 82 82 MET MET B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 LEU 85 85 85 LEU LEU B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 PRO 87 87 87 PRO PRO B . n B 1 88 GLU 88 88 88 GLU GLU B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 THR 90 90 90 THR THR B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 TYR 93 93 93 TYR TYR B . n B 1 94 TYR 94 94 94 TYR TYR B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 PHE 98 98 98 PHE PHE B . n B 1 99 MET 99 99 99 MET MET B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 THR 101 101 101 THR THR B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 SER 103 103 103 SER SER B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 GLY 107 107 107 GLY GLY B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 PHE 109 109 109 PHE PHE B . n B 1 110 TRP 110 110 110 TRP TRP B . n B 1 111 GLY 111 111 111 GLY GLY B . n B 1 112 GLN 112 112 112 GLN GLN B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 THR 114 114 114 THR THR B . n B 1 115 GLN 115 115 115 GLN GLN B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 THR 117 117 117 THR THR B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 SER 119 119 119 SER SER B . n B 1 120 SER 120 120 ? ? ? B . n B 1 121 HIS 121 121 ? ? ? B . n B 1 122 HIS 122 122 ? ? ? B . n B 1 123 HIS 123 123 ? ? ? B . n B 1 124 HIS 124 124 ? ? ? B . n B 1 125 HIS 125 125 ? ? ? B . n B 1 126 HIS 126 126 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F 3 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 1150 ? 3 MORE -28 ? 3 'SSA (A^2)' 11470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-08-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -8.6390 -14.4830 19.1530 0.0557 0.2520 0.3932 -0.0435 -0.0112 -0.1443 1.9788 32.2550 6.9969 -7.9002 -0.0525 1.4122 -0.0708 0.1649 -0.5002 0.4448 -0.4925 1.8152 0.2285 -0.5741 0.5633 'X-RAY DIFFRACTION' 2 ? refined -2.1670 -4.8450 14.9560 0.1610 0.1802 0.2042 0.0106 0.0064 0.0005 0.4461 2.3915 1.2672 -0.8789 0.1193 -0.2965 0.0380 0.1334 -0.0087 0.0946 -0.0767 -0.0118 -0.0255 -0.0931 0.0387 'X-RAY DIFFRACTION' 3 ? refined -6.5970 -5.5140 10.6550 0.1295 0.2085 0.1720 0.0119 -0.0163 0.0097 1.3043 5.4414 1.2408 -1.6946 -0.2059 0.9262 0.0656 0.3104 -0.0596 0.0468 -0.0294 0.0909 0.0057 -0.0975 -0.0362 'X-RAY DIFFRACTION' 4 ? refined -9.3370 -10.6040 11.5730 0.1177 0.2847 0.1790 0.0063 -0.0034 -0.0207 2.8213 8.2818 1.6908 -3.2718 -0.3689 1.5187 0.0813 0.4473 -0.2275 0.3346 -0.3296 0.5781 0.2760 -0.2788 0.2483 'X-RAY DIFFRACTION' 5 ? refined 23.0080 8.3590 5.7750 0.1036 0.1655 0.1973 -0.0900 0.0831 -0.0474 3.0745 1.1491 15.8049 0.0749 6.3280 0.6239 0.0261 0.1674 0.0219 -0.1668 0.1502 -0.2829 -0.1972 0.6479 -0.1763 'X-RAY DIFFRACTION' 6 ? refined 14.6000 2.1920 3.3090 0.1606 0.1788 0.1876 -0.0047 0.0613 -0.0381 2.5816 1.3033 1.8798 0.8870 -1.0973 0.3153 -0.0049 0.1125 -0.2176 -0.1165 0.1503 -0.1297 -0.2072 0.0575 -0.1454 'X-RAY DIFFRACTION' 7 ? refined 18.0670 -0.9930 3.2870 0.1164 0.1722 0.1946 0.0201 0.0581 -0.0407 2.4387 1.7237 4.9022 1.0892 1.9182 2.5213 0.0676 0.0196 -0.2471 -0.2737 0.1125 -0.1977 -0.3595 0.1951 -0.1801 'X-RAY DIFFRACTION' 8 ? refined 25.1100 1.5330 3.3510 0.1123 0.2983 0.2614 -0.0330 0.0908 -0.0327 1.3625 4.8606 13.4622 1.9174 3.6662 7.1777 -0.1510 -0.0801 -0.0675 -0.4352 0.0090 -0.2415 -0.4462 0.2975 0.1420 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 9 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 10 ? ? A 82 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 83 ? ? A 102 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 103 ? ? A 120 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 1 ? ? B 19 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 20 ? ? B 80 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 81 ? ? B 106 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 107 ? ? B 119 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.6.0117 ? 2 XDS 'data reduction' . ? 3 XDS 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 76 ? ? 36.40 46.86 2 1 ALA A 91 ? ? 176.06 172.17 3 1 ALA B 91 ? ? 179.85 166.87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 40 ? A ASP 40 2 1 Y 1 A PRO 41 ? A PRO 41 3 1 Y 1 A GLY 42 ? A GLY 42 4 1 Y 1 A LYS 43 ? A LYS 43 5 1 Y 1 A HIS 121 ? A HIS 121 6 1 Y 1 A HIS 122 ? A HIS 122 7 1 Y 1 A HIS 123 ? A HIS 123 8 1 Y 1 A HIS 124 ? A HIS 124 9 1 Y 1 A HIS 125 ? A HIS 125 10 1 Y 1 A HIS 126 ? A HIS 126 11 1 Y 1 B SER 120 ? B SER 120 12 1 Y 1 B HIS 121 ? B HIS 121 13 1 Y 1 B HIS 122 ? B HIS 122 14 1 Y 1 B HIS 123 ? B HIS 123 15 1 Y 1 B HIS 124 ? B HIS 124 16 1 Y 1 B HIS 125 ? B HIS 125 17 1 Y 1 B HIS 126 ? B HIS 126 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 201 2 SO4 SO4 A . D 2 SO4 1 201 1 SO4 SO4 B . E 3 HOH 1 301 2 HOH HOH A . E 3 HOH 2 302 3 HOH HOH A . E 3 HOH 3 303 4 HOH HOH A . E 3 HOH 4 304 5 HOH HOH A . E 3 HOH 5 305 6 HOH HOH A . E 3 HOH 6 306 7 HOH HOH A . E 3 HOH 7 307 9 HOH HOH A . E 3 HOH 8 308 12 HOH HOH A . E 3 HOH 9 309 13 HOH HOH A . E 3 HOH 10 310 14 HOH HOH A . E 3 HOH 11 311 15 HOH HOH A . E 3 HOH 12 312 17 HOH HOH A . E 3 HOH 13 313 18 HOH HOH A . E 3 HOH 14 314 20 HOH HOH A . E 3 HOH 15 315 21 HOH HOH A . E 3 HOH 16 316 23 HOH HOH A . E 3 HOH 17 317 24 HOH HOH A . E 3 HOH 18 318 25 HOH HOH A . E 3 HOH 19 319 26 HOH HOH A . E 3 HOH 20 320 29 HOH HOH A . E 3 HOH 21 321 30 HOH HOH A . E 3 HOH 22 322 31 HOH HOH A . E 3 HOH 23 323 32 HOH HOH A . E 3 HOH 24 324 34 HOH HOH A . E 3 HOH 25 325 35 HOH HOH A . E 3 HOH 26 326 36 HOH HOH A . F 3 HOH 1 301 1 HOH HOH B . F 3 HOH 2 302 8 HOH HOH B . F 3 HOH 3 303 11 HOH HOH B . F 3 HOH 4 304 16 HOH HOH B . F 3 HOH 5 305 19 HOH HOH B . F 3 HOH 6 306 22 HOH HOH B . F 3 HOH 7 307 27 HOH HOH B . F 3 HOH 8 308 28 HOH HOH B . F 3 HOH 9 309 33 HOH HOH B . F 3 HOH 10 310 37 HOH HOH B . F 3 HOH 11 311 38 HOH HOH B . F 3 HOH 12 312 39 HOH HOH B . F 3 HOH 13 313 40 HOH HOH B . F 3 HOH 14 314 41 HOH HOH B . F 3 HOH 15 315 42 HOH HOH B . F 3 HOH 16 316 43 HOH HOH B . #