data_4M3L # _entry.id 4M3L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.299 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4M3L RCSB RCSB081422 WWPDB D_1000081422 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3DDT _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4M3L _pdbx_database_status.recvd_initial_deposition_date 2013-08-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mayans, O.' 1 'Franke, B.' 2 # _citation.id primary _citation.title 'Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1.' _citation.journal_abbrev 'Open Biol' _citation.journal_volume 4 _citation.page_first 130172 _citation.page_last 130172 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2046-2441 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24671946 _citation.pdbx_database_id_DOI 10.1098/rsob.130172 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Franke, B.' 1 ? primary 'Gasch, A.' 2 ? primary 'Rodriguez, D.' 3 ? primary 'Chami, M.' 4 ? primary 'Khan, M.M.' 5 ? primary 'Rudolf, R.' 6 ? primary 'Bibby, J.' 7 ? primary 'Hanashima, A.' 8 ? primary 'Bogomolovas, J.' 9 ? primary 'von Castelmur, E.' 10 ? primary 'Rigden, D.J.' 11 ? primary 'Uson, I.' 12 ? primary 'Labeit, S.' 13 ? primary 'Mayans, O.' 14 ? # _cell.entry_id 4M3L _cell.length_a 70.790 _cell.length_b 24.410 _cell.length_c 75.390 _cell.angle_alpha 90.00 _cell.angle_beta 107.65 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4M3L _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase TRIM63' 6998.777 4 6.3.2.- ? 'unp residues 214-271' ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 11 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 9 ? ? ? ? 5 water nat water 18.015 55 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Iris RING finger protein, Muscle-specific RING finger protein 1, MuRF-1, MuRF1, RING finger protein 28, Striated muscle RING zinc finger protein, Tripartite motif-containing protein 63 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAMDTLYAILDEKKSELLQRITQEQEEKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPG _entity_poly.pdbx_seq_one_letter_code_can GAMDTLYAILDEKKSELLQRITQEQEEKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPG _entity_poly.pdbx_strand_id A,C,B,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 THR n 1 6 LEU n 1 7 TYR n 1 8 ALA n 1 9 ILE n 1 10 LEU n 1 11 ASP n 1 12 GLU n 1 13 LYS n 1 14 LYS n 1 15 SER n 1 16 GLU n 1 17 LEU n 1 18 LEU n 1 19 GLN n 1 20 ARG n 1 21 ILE n 1 22 THR n 1 23 GLN n 1 24 GLU n 1 25 GLN n 1 26 GLU n 1 27 GLU n 1 28 LYS n 1 29 LEU n 1 30 SER n 1 31 PHE n 1 32 ILE n 1 33 GLU n 1 34 ALA n 1 35 LEU n 1 36 ILE n 1 37 GLN n 1 38 GLN n 1 39 TYR n 1 40 GLN n 1 41 GLU n 1 42 GLN n 1 43 LEU n 1 44 ASP n 1 45 LYS n 1 46 SER n 1 47 THR n 1 48 LYS n 1 49 LEU n 1 50 VAL n 1 51 GLU n 1 52 THR n 1 53 ALA n 1 54 ILE n 1 55 GLN n 1 56 SER n 1 57 LEU n 1 58 ASP n 1 59 GLU n 1 60 PRO n 1 61 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'IRF, MURF1, RNF28, SMRZ, TRIM63' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETM-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRI63_HUMAN _struct_ref.pdbx_db_accession Q969Q1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DTLYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPG _struct_ref.pdbx_align_begin 214 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M3L A 4 ? 61 ? Q969Q1 214 ? 271 ? 214 271 2 1 4M3L C 4 ? 61 ? Q969Q1 214 ? 271 ? 214 271 3 1 4M3L B 4 ? 61 ? Q969Q1 214 ? 271 ? 214 271 4 1 4M3L D 4 ? 61 ? Q969Q1 214 ? 271 ? 213 270 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4M3L GLY A 1 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -3 1 1 4M3L ALA A 2 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -2 2 1 4M3L MET A 3 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -1 3 1 4M3L GLU A 27 ? UNP Q969Q1 LYS 237 VARIANT 237 4 2 4M3L GLY C 1 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -3 5 2 4M3L ALA C 2 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -2 6 2 4M3L MET C 3 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -1 7 2 4M3L GLU C 27 ? UNP Q969Q1 LYS 237 VARIANT 237 8 3 4M3L GLY B 1 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -3 9 3 4M3L ALA B 2 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -2 10 3 4M3L MET B 3 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' -1 11 3 4M3L GLU B 27 ? UNP Q969Q1 LYS 237 VARIANT 237 12 4 4M3L GLY D 1 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' 210 13 4 4M3L ALA D 2 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' 211 14 4 4M3L MET D 3 ? UNP Q969Q1 ? ? 'EXPRESSION TAG' 212 15 4 4M3L GLU D 27 ? UNP Q969Q1 LYS 237 VARIANT 236 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4M3L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '35% MPD, 0.1M sodium acetate, 20% glycerol, 20mM sodium fluoride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-03-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4M3L _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.1 _reflns.number_obs 14624 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.027 _reflns.pdbx_netI_over_sigmaI 17.24 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.64 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.45 _reflns_shell.meanI_over_sigI_obs 3.31 _reflns_shell.pdbx_redundancy 3.74 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4M3L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14598 _refine.ls_number_reflns_all 14624 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.815 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 97.81 _refine.ls_R_factor_obs 0.2145 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2118 _refine.ls_R_factor_R_free 0.2615 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.96 _refine.ls_number_reflns_R_free 724 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.0973 _refine.aniso_B[2][2] 0.1690 _refine.aniso_B[3][3] -0.0717 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -10.4440 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'ARCIMBOLDO (fragment based ab initio)' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 30.20 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1848 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 110 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 2013 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 19.815 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1954 'X-RAY DIFFRACTION' ? f_angle_d 0.836 ? ? 2595 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.568 ? ? 761 'X-RAY DIFFRACTION' ? f_chiral_restr 0.051 ? ? 303 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 328 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.1001 2.2621 2745 0.2528 98.00 0.2888 . . 121 . . . . 'X-RAY DIFFRACTION' . 2.2621 2.4893 2716 0.2146 98.00 0.3025 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.4893 2.8486 2762 0.2044 99.00 0.2801 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.8486 3.5855 2808 0.2017 98.00 0.2559 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.5855 19.8158 2843 0.2096 97.00 0.2418 . . 165 . . . . # _struct.entry_id 4M3L _struct.title 'Crystal Structure of the coiled coil domain of MuRF1' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase TRIM63 (E.C.6.3.2.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M3L _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E3 ubiquitin ligase, titin, sarcoskeleton, ligase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 4 ? U N N 4 ? V N N 3 ? W N N 4 ? X N N 3 ? Y N N 4 ? Z N N 5 ? AA N N 5 ? BA N N 5 ? CA N N 5 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ASP A 58 ? GLY A -3 ASP A 268 1 ? 58 HELX_P HELX_P2 2 MET B 3 ? LEU B 57 ? MET C -1 LEU C 267 1 ? 55 HELX_P HELX_P3 3 ALA C 2 ? LEU C 57 ? ALA B -2 LEU B 267 1 ? 56 HELX_P HELX_P4 4 LEU D 6 ? SER D 56 ? LEU D 215 SER D 265 1 ? 51 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MPD A 301' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 302' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 303' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT A 304' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACT A 305' AC6 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE GOL C 301' AC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE GOL C 302' AC8 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE ACT C 303' AC9 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL C 304' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL C 305' BC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ACT C 307' BC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 301' BC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 302' BC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL B 303' BC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT B 304' BC7 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE ACT B 305' BC8 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL B 306' BC9 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACT B 307' CC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE GOL D 301' CC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE ACT D 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LEU A 17 ? LEU A 227 . ? 1_555 ? 2 AC1 4 ARG B 20 ? ARG C 230 . ? 1_565 ? 3 AC1 4 ACT P . ? ACT C 307 . ? 1_565 ? 4 AC1 4 HOH AA . ? HOH C 410 . ? 1_565 ? 5 AC2 4 GLN A 37 ? GLN A 247 . ? 1_555 ? 6 AC2 4 TYR B 39 ? TYR C 249 . ? 1_555 ? 7 AC2 4 LYS D 48 ? LYS D 257 . ? 1_545 ? 8 AC2 4 THR D 52 ? THR D 261 . ? 1_545 ? 9 AC3 3 TYR A 7 ? TYR A 217 . ? 1_555 ? 10 AC3 3 ASP A 11 ? ASP A 221 . ? 1_555 ? 11 AC3 3 LYS B 13 ? LYS C 223 . ? 1_565 ? 12 AC4 3 SER A 30 ? SER A 240 . ? 1_555 ? 13 AC4 3 ALA A 34 ? ALA A 244 . ? 1_555 ? 14 AC4 3 GLN A 37 ? GLN A 247 . ? 1_555 ? 15 AC5 2 GLU A 27 ? GLU A 237 . ? 1_555 ? 16 AC5 2 TYR D 7 ? TYR D 216 . ? 1_646 ? 17 AC6 1 GLU B 33 ? GLU C 243 . ? 1_555 ? 18 AC7 1 LEU B 17 ? LEU C 227 . ? 1_555 ? 19 AC8 1 LYS B 14 ? LYS C 224 . ? 1_555 ? 20 AC9 2 GLU B 24 ? GLU C 234 . ? 1_565 ? 21 AC9 2 GLU B 33 ? GLU C 243 . ? 1_555 ? 22 BC1 2 GLU B 26 ? GLU C 236 . ? 1_555 ? 23 BC1 2 GLU B 33 ? GLU C 243 . ? 1_555 ? 24 BC2 4 MPD E . ? MPD A 301 . ? 1_545 ? 25 BC2 4 ARG B 20 ? ARG C 230 . ? 1_555 ? 26 BC2 4 GLU B 24 ? GLU C 234 . ? 1_555 ? 27 BC2 4 HOH AA . ? HOH C 410 . ? 1_555 ? 28 BC3 3 SER A 15 ? SER A 225 . ? 1_474 ? 29 BC3 3 GLU C 16 ? GLU B 226 . ? 1_555 ? 30 BC3 3 HOH BA . ? HOH B 404 . ? 1_555 ? 31 BC4 5 ILE A 9 ? ILE A 219 . ? 1_464 ? 32 BC4 5 GLN C 23 ? GLN B 233 . ? 1_555 ? 33 BC4 5 GLU C 26 ? GLU B 236 . ? 1_555 ? 34 BC4 5 SER C 30 ? SER B 240 . ? 1_555 ? 35 BC4 5 LEU B 10 ? LEU C 220 . ? 1_474 ? 36 BC5 4 THR C 52 ? THR B 262 . ? 1_555 ? 37 BC5 4 SER C 56 ? SER B 266 . ? 1_555 ? 38 BC5 4 HOH BA . ? HOH B 403 . ? 1_555 ? 39 BC5 4 LEU B 49 ? LEU C 259 . ? 1_555 ? 40 BC6 3 ILE A 9 ? ILE A 219 . ? 1_474 ? 41 BC6 3 GLU A 12 ? GLU A 222 . ? 1_474 ? 42 BC6 3 ARG C 20 ? ARG B 230 . ? 1_555 ? 43 BC7 1 LEU C 17 ? LEU B 227 . ? 1_555 ? 44 BC8 5 GLN A 19 ? GLN A 229 . ? 1_474 ? 45 BC8 5 THR A 22 ? THR A 232 . ? 1_474 ? 46 BC8 5 GLN B 25 ? GLN C 235 . ? 1_474 ? 47 BC8 5 LYS B 28 ? LYS C 238 . ? 1_474 ? 48 BC8 5 LEU B 29 ? LEU C 239 . ? 1_474 ? 49 BC9 2 ARG C 20 ? ARG B 230 . ? 1_555 ? 50 BC9 2 GLU C 24 ? GLU B 234 . ? 1_555 ? 51 CC1 2 ALA D 34 ? ALA D 243 . ? 1_555 ? 52 CC1 2 GLN D 38 ? GLN D 247 . ? 1_555 ? 53 CC2 3 LYS C 13 ? LYS B 223 . ? 1_545 ? 54 CC2 3 LEU D 10 ? LEU D 219 . ? 1_555 ? 55 CC2 3 LYS D 14 ? LYS D 223 . ? 1_555 ? # _database_PDB_matrix.entry_id 4M3L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4M3L _atom_sites.fract_transf_matrix[1][1] 0.014126 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004495 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040967 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013920 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 ALA 2 -2 -2 ALA ALA A . n A 1 3 MET 3 -1 -1 MET MET A . n A 1 4 ASP 4 214 214 ASP ASP A . n A 1 5 THR 5 215 215 THR THR A . n A 1 6 LEU 6 216 216 LEU LEU A . n A 1 7 TYR 7 217 217 TYR TYR A . n A 1 8 ALA 8 218 218 ALA ALA A . n A 1 9 ILE 9 219 219 ILE ILE A . n A 1 10 LEU 10 220 220 LEU LEU A . n A 1 11 ASP 11 221 221 ASP ASP A . n A 1 12 GLU 12 222 222 GLU GLU A . n A 1 13 LYS 13 223 223 LYS LYS A . n A 1 14 LYS 14 224 224 LYS LYS A . n A 1 15 SER 15 225 225 SER SER A . n A 1 16 GLU 16 226 226 GLU GLU A . n A 1 17 LEU 17 227 227 LEU LEU A . n A 1 18 LEU 18 228 228 LEU LEU A . n A 1 19 GLN 19 229 229 GLN GLN A . n A 1 20 ARG 20 230 230 ARG ARG A . n A 1 21 ILE 21 231 231 ILE ILE A . n A 1 22 THR 22 232 232 THR THR A . n A 1 23 GLN 23 233 233 GLN GLN A . n A 1 24 GLU 24 234 234 GLU GLU A . n A 1 25 GLN 25 235 235 GLN GLN A . n A 1 26 GLU 26 236 236 GLU GLU A . n A 1 27 GLU 27 237 237 GLU GLU A . n A 1 28 LYS 28 238 238 LYS LYS A . n A 1 29 LEU 29 239 239 LEU LEU A . n A 1 30 SER 30 240 240 SER SER A . n A 1 31 PHE 31 241 241 PHE PHE A . n A 1 32 ILE 32 242 242 ILE ILE A . n A 1 33 GLU 33 243 243 GLU GLU A . n A 1 34 ALA 34 244 244 ALA ALA A . n A 1 35 LEU 35 245 245 LEU LEU A . n A 1 36 ILE 36 246 246 ILE ILE A . n A 1 37 GLN 37 247 247 GLN GLN A . n A 1 38 GLN 38 248 248 GLN GLN A . n A 1 39 TYR 39 249 249 TYR TYR A . n A 1 40 GLN 40 250 250 GLN GLN A . n A 1 41 GLU 41 251 251 GLU GLU A . n A 1 42 GLN 42 252 252 GLN GLN A . n A 1 43 LEU 43 253 253 LEU LEU A . n A 1 44 ASP 44 254 254 ASP ASP A . n A 1 45 LYS 45 255 255 LYS LYS A . n A 1 46 SER 46 256 256 SER SER A . n A 1 47 THR 47 257 257 THR THR A . n A 1 48 LYS 48 258 258 LYS LYS A . n A 1 49 LEU 49 259 259 LEU LEU A . n A 1 50 VAL 50 260 260 VAL VAL A . n A 1 51 GLU 51 261 261 GLU GLU A . n A 1 52 THR 52 262 262 THR THR A . n A 1 53 ALA 53 263 263 ALA ALA A . n A 1 54 ILE 54 264 264 ILE ILE A . n A 1 55 GLN 55 265 265 GLN GLN A . n A 1 56 SER 56 266 266 SER SER A . n A 1 57 LEU 57 267 267 LEU LEU A . n A 1 58 ASP 58 268 268 ASP ASP A . n A 1 59 GLU 59 269 269 GLU GLU A . n A 1 60 PRO 60 270 270 PRO PRO A . n A 1 61 GLY 61 271 ? ? ? A . n B 1 1 GLY 1 -3 ? ? ? C . n B 1 2 ALA 2 -2 -2 ALA ALA C . n B 1 3 MET 3 -1 -1 MET MET C . n B 1 4 ASP 4 214 214 ASP ASP C . n B 1 5 THR 5 215 215 THR THR C . n B 1 6 LEU 6 216 216 LEU LEU C . n B 1 7 TYR 7 217 217 TYR TYR C . n B 1 8 ALA 8 218 218 ALA ALA C . n B 1 9 ILE 9 219 219 ILE ILE C . n B 1 10 LEU 10 220 220 LEU LEU C . n B 1 11 ASP 11 221 221 ASP ASP C . n B 1 12 GLU 12 222 222 GLU GLU C . n B 1 13 LYS 13 223 223 LYS LYS C . n B 1 14 LYS 14 224 224 LYS LYS C . n B 1 15 SER 15 225 225 SER SER C . n B 1 16 GLU 16 226 226 GLU GLU C . n B 1 17 LEU 17 227 227 LEU LEU C . n B 1 18 LEU 18 228 228 LEU LEU C . n B 1 19 GLN 19 229 229 GLN GLN C . n B 1 20 ARG 20 230 230 ARG ARG C . n B 1 21 ILE 21 231 231 ILE ILE C . n B 1 22 THR 22 232 232 THR THR C . n B 1 23 GLN 23 233 233 GLN GLN C . n B 1 24 GLU 24 234 234 GLU GLU C . n B 1 25 GLN 25 235 235 GLN GLN C . n B 1 26 GLU 26 236 236 GLU GLU C . n B 1 27 GLU 27 237 237 GLU GLU C . n B 1 28 LYS 28 238 238 LYS LYS C . n B 1 29 LEU 29 239 239 LEU LEU C . n B 1 30 SER 30 240 240 SER SER C . n B 1 31 PHE 31 241 241 PHE PHE C . n B 1 32 ILE 32 242 242 ILE ILE C . n B 1 33 GLU 33 243 243 GLU GLU C . n B 1 34 ALA 34 244 244 ALA ALA C . n B 1 35 LEU 35 245 245 LEU LEU C . n B 1 36 ILE 36 246 246 ILE ILE C . n B 1 37 GLN 37 247 247 GLN GLN C . n B 1 38 GLN 38 248 248 GLN GLN C . n B 1 39 TYR 39 249 249 TYR TYR C . n B 1 40 GLN 40 250 250 GLN GLN C . n B 1 41 GLU 41 251 251 GLU GLU C . n B 1 42 GLN 42 252 252 GLN GLN C . n B 1 43 LEU 43 253 253 LEU LEU C . n B 1 44 ASP 44 254 254 ASP ASP C . n B 1 45 LYS 45 255 255 LYS LYS C . n B 1 46 SER 46 256 256 SER SER C . n B 1 47 THR 47 257 257 THR THR C . n B 1 48 LYS 48 258 258 LYS LYS C . n B 1 49 LEU 49 259 259 LEU LEU C . n B 1 50 VAL 50 260 260 VAL VAL C . n B 1 51 GLU 51 261 261 GLU GLU C . n B 1 52 THR 52 262 262 THR THR C . n B 1 53 ALA 53 263 263 ALA ALA C . n B 1 54 ILE 54 264 264 ILE ILE C . n B 1 55 GLN 55 265 265 GLN GLN C . n B 1 56 SER 56 266 266 SER SER C . n B 1 57 LEU 57 267 267 LEU LEU C . n B 1 58 ASP 58 268 268 ASP ASP C . n B 1 59 GLU 59 269 ? ? ? C . n B 1 60 PRO 60 270 ? ? ? C . n B 1 61 GLY 61 271 ? ? ? C . n C 1 1 GLY 1 -3 -3 GLY GLY B . n C 1 2 ALA 2 -2 -2 ALA ALA B . n C 1 3 MET 3 -1 -1 MET MET B . n C 1 4 ASP 4 214 214 ASP ASP B . n C 1 5 THR 5 215 215 THR THR B . n C 1 6 LEU 6 216 216 LEU LEU B . n C 1 7 TYR 7 217 217 TYR TYR B . n C 1 8 ALA 8 218 218 ALA ALA B . n C 1 9 ILE 9 219 219 ILE ILE B . n C 1 10 LEU 10 220 220 LEU LEU B . n C 1 11 ASP 11 221 221 ASP ASP B . n C 1 12 GLU 12 222 222 GLU GLU B . n C 1 13 LYS 13 223 223 LYS LYS B . n C 1 14 LYS 14 224 224 LYS LYS B . n C 1 15 SER 15 225 225 SER SER B . n C 1 16 GLU 16 226 226 GLU GLU B . n C 1 17 LEU 17 227 227 LEU LEU B . n C 1 18 LEU 18 228 228 LEU LEU B . n C 1 19 GLN 19 229 229 GLN GLN B . n C 1 20 ARG 20 230 230 ARG ARG B . n C 1 21 ILE 21 231 231 ILE ILE B . n C 1 22 THR 22 232 232 THR THR B . n C 1 23 GLN 23 233 233 GLN GLN B . n C 1 24 GLU 24 234 234 GLU GLU B . n C 1 25 GLN 25 235 235 GLN GLN B . n C 1 26 GLU 26 236 236 GLU GLU B . n C 1 27 GLU 27 237 237 GLU GLU B . n C 1 28 LYS 28 238 238 LYS LYS B . n C 1 29 LEU 29 239 239 LEU LEU B . n C 1 30 SER 30 240 240 SER SER B . n C 1 31 PHE 31 241 241 PHE PHE B . n C 1 32 ILE 32 242 242 ILE ILE B . n C 1 33 GLU 33 243 243 GLU GLU B . n C 1 34 ALA 34 244 244 ALA ALA B . n C 1 35 LEU 35 245 245 LEU LEU B . n C 1 36 ILE 36 246 246 ILE ILE B . n C 1 37 GLN 37 247 247 GLN GLN B . n C 1 38 GLN 38 248 248 GLN GLN B . n C 1 39 TYR 39 249 249 TYR TYR B . n C 1 40 GLN 40 250 250 GLN GLN B . n C 1 41 GLU 41 251 251 GLU GLU B . n C 1 42 GLN 42 252 252 GLN GLN B . n C 1 43 LEU 43 253 253 LEU LEU B . n C 1 44 ASP 44 254 254 ASP ASP B . n C 1 45 LYS 45 255 255 LYS LYS B . n C 1 46 SER 46 256 256 SER SER B . n C 1 47 THR 47 257 257 THR THR B . n C 1 48 LYS 48 258 258 LYS LYS B . n C 1 49 LEU 49 259 259 LEU LEU B . n C 1 50 VAL 50 260 260 VAL VAL B . n C 1 51 GLU 51 261 261 GLU GLU B . n C 1 52 THR 52 262 262 THR THR B . n C 1 53 ALA 53 263 263 ALA ALA B . n C 1 54 ILE 54 264 264 ILE ILE B . n C 1 55 GLN 55 265 265 GLN GLN B . n C 1 56 SER 56 266 266 SER SER B . n C 1 57 LEU 57 267 267 LEU LEU B . n C 1 58 ASP 58 268 268 ASP ASP B . n C 1 59 GLU 59 269 ? ? ? B . n C 1 60 PRO 60 270 ? ? ? B . n C 1 61 GLY 61 271 ? ? ? B . n D 1 1 GLY 1 210 ? ? ? D . n D 1 2 ALA 2 211 ? ? ? D . n D 1 3 MET 3 212 ? ? ? D . n D 1 4 ASP 4 213 ? ? ? D . n D 1 5 THR 5 214 215 THR THR D . n D 1 6 LEU 6 215 216 LEU LEU D . n D 1 7 TYR 7 216 217 TYR TYR D . n D 1 8 ALA 8 217 218 ALA ALA D . n D 1 9 ILE 9 218 219 ILE ILE D . n D 1 10 LEU 10 219 220 LEU LEU D . n D 1 11 ASP 11 220 221 ASP ASP D . n D 1 12 GLU 12 221 222 GLU GLU D . n D 1 13 LYS 13 222 223 LYS LYS D . n D 1 14 LYS 14 223 224 LYS LYS D . n D 1 15 SER 15 224 225 SER SER D . n D 1 16 GLU 16 225 226 GLU GLU D . n D 1 17 LEU 17 226 227 LEU LEU D . n D 1 18 LEU 18 227 228 LEU LEU D . n D 1 19 GLN 19 228 229 GLN GLN D . n D 1 20 ARG 20 229 230 ARG ARG D . n D 1 21 ILE 21 230 231 ILE ILE D . n D 1 22 THR 22 231 232 THR THR D . n D 1 23 GLN 23 232 233 GLN GLN D . n D 1 24 GLU 24 233 234 GLU GLU D . n D 1 25 GLN 25 234 235 GLN GLN D . n D 1 26 GLU 26 235 236 GLU GLU D . n D 1 27 GLU 27 236 237 GLU GLU D . n D 1 28 LYS 28 237 238 LYS LYS D . n D 1 29 LEU 29 238 239 LEU LEU D . n D 1 30 SER 30 239 240 SER SER D . n D 1 31 PHE 31 240 241 PHE PHE D . n D 1 32 ILE 32 241 242 ILE ILE D . n D 1 33 GLU 33 242 243 GLU GLU D . n D 1 34 ALA 34 243 244 ALA ALA D . n D 1 35 LEU 35 244 245 LEU LEU D . n D 1 36 ILE 36 245 246 ILE ILE D . n D 1 37 GLN 37 246 247 GLN GLN D . n D 1 38 GLN 38 247 248 GLN GLN D . n D 1 39 TYR 39 248 249 TYR TYR D . n D 1 40 GLN 40 249 250 GLN GLN D . n D 1 41 GLU 41 250 251 GLU GLU D . n D 1 42 GLN 42 251 252 GLN GLN D . n D 1 43 LEU 43 252 253 LEU LEU D . n D 1 44 ASP 44 253 254 ASP ASP D . n D 1 45 LYS 45 254 255 LYS LYS D . n D 1 46 SER 46 255 256 SER SER D . n D 1 47 THR 47 256 257 THR THR D . n D 1 48 LYS 48 257 258 LYS LYS D . n D 1 49 LEU 49 258 259 LEU LEU D . n D 1 50 VAL 50 259 260 VAL VAL D . n D 1 51 GLU 51 260 261 GLU GLU D . n D 1 52 THR 52 261 262 THR THR D . n D 1 53 ALA 53 262 263 ALA ALA D . n D 1 54 ILE 54 263 264 ILE ILE D . n D 1 55 GLN 55 264 265 GLN GLN D . n D 1 56 SER 56 265 266 SER SER D . n D 1 57 LEU 57 266 267 LEU LEU D . n D 1 58 ASP 58 267 ? ? ? D . n D 1 59 GLU 59 268 ? ? ? D . n D 1 60 PRO 60 269 ? ? ? D . n D 1 61 GLY 61 270 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MPD 1 301 301 MPD MPD A . F 3 GOL 1 302 302 GOL GOL A . G 3 GOL 1 303 303 GOL GOL A . H 4 ACT 1 304 304 ACT ACT A . I 4 ACT 1 305 305 ACT ACT A . J 3 GOL 1 301 301 GOL GOL C . K 3 GOL 1 302 302 GOL GOL C . L 4 ACT 1 303 303 ACT ACT C . M 3 GOL 1 304 304 GOL GOL C . N 3 GOL 1 305 305 GOL GOL C . O 4 ACT 1 306 306 ACT ACT C . P 4 ACT 1 307 307 ACT ACT C . Q 3 GOL 1 301 301 GOL GOL B . R 3 GOL 1 302 302 GOL GOL B . S 3 GOL 1 303 303 GOL GOL B . T 4 ACT 1 304 304 ACT ACT B . U 4 ACT 1 305 305 ACT ACT B . V 3 GOL 1 306 306 GOL GOL B . W 4 ACT 1 307 308 ACT ACT B . X 3 GOL 1 301 301 GOL GOL D . Y 4 ACT 1 302 302 ACT ACT D . Z 5 HOH 1 401 401 HOH HOH A . Z 5 HOH 2 402 402 HOH HOH A . Z 5 HOH 3 403 403 HOH HOH A . Z 5 HOH 4 404 404 HOH HOH A . Z 5 HOH 5 405 405 HOH HOH A . Z 5 HOH 6 406 407 HOH HOH A . Z 5 HOH 7 407 408 HOH HOH A . Z 5 HOH 8 408 409 HOH HOH A . Z 5 HOH 9 409 410 HOH HOH A . Z 5 HOH 10 410 411 HOH HOH A . Z 5 HOH 11 411 412 HOH HOH A . Z 5 HOH 12 412 413 HOH HOH A . Z 5 HOH 13 413 414 HOH HOH A . Z 5 HOH 14 414 415 HOH HOH A . Z 5 HOH 15 415 416 HOH HOH A . Z 5 HOH 16 416 419 HOH HOH A . Z 5 HOH 17 417 420 HOH HOH A . Z 5 HOH 18 418 421 HOH HOH A . Z 5 HOH 19 419 422 HOH HOH A . Z 5 HOH 20 420 423 HOH HOH A . Z 5 HOH 21 421 424 HOH HOH A . Z 5 HOH 22 422 405 HOH HOH A . AA 5 HOH 1 401 417 HOH HOH C . AA 5 HOH 2 402 418 HOH HOH C . AA 5 HOH 3 403 401 HOH HOH C . AA 5 HOH 4 404 402 HOH HOH C . AA 5 HOH 5 405 403 HOH HOH C . AA 5 HOH 6 406 404 HOH HOH C . AA 5 HOH 7 407 405 HOH HOH C . AA 5 HOH 8 408 406 HOH HOH C . AA 5 HOH 9 409 407 HOH HOH C . AA 5 HOH 10 410 408 HOH HOH C . AA 5 HOH 11 411 409 HOH HOH C . AA 5 HOH 12 412 410 HOH HOH C . AA 5 HOH 13 413 401 HOH HOH C . AA 5 HOH 14 414 406 HOH HOH C . BA 5 HOH 1 401 402 HOH HOH B . BA 5 HOH 2 402 403 HOH HOH B . BA 5 HOH 3 403 404 HOH HOH B . BA 5 HOH 4 404 407 HOH HOH B . BA 5 HOH 5 405 408 HOH HOH B . BA 5 HOH 6 406 409 HOH HOH B . BA 5 HOH 7 407 413 HOH HOH B . CA 5 HOH 1 401 406 HOH HOH D . CA 5 HOH 2 402 410 HOH HOH D . CA 5 HOH 3 403 411 HOH HOH D . CA 5 HOH 4 404 412 HOH HOH D . CA 5 HOH 5 405 401 HOH HOH D . CA 5 HOH 6 406 402 HOH HOH D . CA 5 HOH 7 407 403 HOH HOH D . CA 5 HOH 8 408 404 HOH HOH D . CA 5 HOH 9 409 407 HOH HOH D . CA 5 HOH 10 410 408 HOH HOH D . CA 5 HOH 11 411 409 HOH HOH D . CA 5 HOH 12 412 410 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11580 ? 1 MORE -112 ? 1 'SSA (A^2)' 16110 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-26 2 'Structure model' 1 1 2018-10-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' entity # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation_author.name' 9 2 'Structure model' '_entity.formula_weight' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 29.6973 0.7103 70.5599 0.2187 0.2264 0.2256 0.0161 0.0039 0.0027 5.3332 1.4801 5.1214 -2.2425 5.2331 -2.5001 -0.2347 0.4042 -0.1637 -0.4652 -0.3540 0.3269 0.0085 -0.2210 -0.5034 'X-RAY DIFFRACTION' 2 ? refined 1.9387 23.3708 32.1602 0.2177 0.4352 0.3466 0.0003 0.0719 0.1376 8.5649 7.4836 7.2409 -7.8253 7.5186 -6.3650 0.3029 -0.4453 0.1504 0.5522 0.4547 -0.2671 -0.3470 0.2636 0.1205 'X-RAY DIFFRACTION' 3 ? refined 41.5287 -4.3968 71.9451 0.1126 0.1030 0.1611 -0.0175 0.0669 -0.0161 6.5764 6.7445 7.9482 -5.7194 6.5469 -6.7184 -0.0739 0.0991 0.0153 -0.1801 -0.0397 0.0072 -0.0303 0.0326 -0.1363 'X-RAY DIFFRACTION' 4 ? refined 4.1421 18.7322 44.7815 0.2387 0.2223 0.2242 -0.0099 0.0181 0.0378 6.7224 2.2745 8.8844 -3.0049 6.7710 -3.2792 -0.4489 0.2364 0.0784 -0.2442 0.2960 -0.1501 0.1543 -0.3642 -0.7329 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -3 A 270 '( CHAIN A AND RESID -3:270 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B -3 B 268 '( CHAIN B AND RESID -3:268 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C -2 C 268 '( CHAIN C AND RESID -2:268 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 214 D 266 '( CHAIN D AND RESID 214:266 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Arcimboldo phasing . ? 1 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 402 ? ? O B HOH 407 ? ? 2.15 2 1 OE1 A GLU 226 ? ? O A HOH 411 ? ? 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 269 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 270 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 270 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.71 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 268 ? ? -70.93 38.55 2 1 GLU A 269 ? ? -165.74 -149.12 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 269 ? CG ? A GLU 59 CG 2 1 Y 1 A GLU 269 ? CD ? A GLU 59 CD 3 1 Y 1 A GLU 269 ? OE1 ? A GLU 59 OE1 4 1 Y 1 A GLU 269 ? OE2 ? A GLU 59 OE2 5 1 Y 1 A PRO 270 ? CG ? A PRO 60 CG 6 1 Y 1 A PRO 270 ? CD ? A PRO 60 CD 7 1 Y 1 C ASP 268 ? CG ? B ASP 58 CG 8 1 Y 1 C ASP 268 ? OD1 ? B ASP 58 OD1 9 1 Y 1 C ASP 268 ? OD2 ? B ASP 58 OD2 10 1 Y 1 D THR 214 ? OG1 ? D THR 5 OG1 11 1 Y 1 D THR 214 ? CG2 ? D THR 5 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 271 ? A GLY 61 2 1 Y 1 C GLY -3 ? B GLY 1 3 1 Y 1 C GLU 269 ? B GLU 59 4 1 Y 1 C PRO 270 ? B PRO 60 5 1 Y 1 C GLY 271 ? B GLY 61 6 1 Y 1 B GLU 269 ? C GLU 59 7 1 Y 1 B PRO 270 ? C PRO 60 8 1 Y 1 B GLY 271 ? C GLY 61 9 1 Y 1 D GLY 210 ? D GLY 1 10 1 Y 1 D ALA 211 ? D ALA 2 11 1 Y 1 D MET 212 ? D MET 3 12 1 Y 1 D ASP 213 ? D ASP 4 13 1 Y 1 D ASP 267 ? D ASP 58 14 1 Y 1 D GLU 268 ? D GLU 59 15 1 Y 1 D PRO 269 ? D PRO 60 16 1 Y 1 D GLY 270 ? D GLY 61 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 GLYCEROL GOL 4 'ACETATE ION' ACT 5 water HOH #