HEADER OXIDOREDUCTASE 06-AUG-13 4M46 TITLE CRYSTAL STRUCTURE OF A GREEN-EMITTER NATIVE OF LAMPYRIS TURKESTANICUS TITLE 2 LUCIFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.12.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMPYRIS TURKESTANICUS; SOURCE 3 ORGANISM_COMMON: IRANIAN FIREFLY; SOURCE 4 ORGANISM_TAXID: 293978; SOURCE 5 STRAIN: LAMPYRIS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BIOLUMINESCENCE, OXIDOREDUCTASE ACTIVITY, MONOOXYGENASE, ATP BINDING, KEYWDS 2 OXIDOREDUCTASE, LUCIFERIN-BINDING, LIGHT EMITTING EXPDTA X-RAY DIFFRACTION AUTHOR Z.SHARAFIAN,S.HOSSEINKHANI,H.NADERI-MANESH REVDAT 3 20-SEP-23 4M46 1 SEQADV REVDAT 2 26-MAR-14 4M46 1 JRNL REVDAT 1 30-OCT-13 4M46 0 JRNL AUTH M.KHEIRABADI,Z.SHARAFIAN,H.NADERI-MANESH,U.HEINEMAN, JRNL AUTH 2 U.GOHLKE,S.HOSSEINKHANI JRNL TITL CRYSTAL STRUCTURE OF NATIVE AND A MUTANT OF LAMPYRIS JRNL TITL 2 TURKESTANICUS LUCIFERASE IMPLICATE IN BIOLUMINESCENCE COLOR JRNL TITL 3 SHIFT. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2729 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24103420 JRNL DOI 10.1016/J.BBAPAP.2013.09.022 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.589 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3574 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4868 ; 0.825 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 4.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;34.619 ;24.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 615 ;13.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 534 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2753 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2196 ; 0.171 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3569 ; 0.316 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1378 ; 0.311 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1282 ; 0.549 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 96.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES SODIUM SALT, 40% V/V PEG REMARK 280 400, 5% W/V PEG 3000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.31500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.15750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.47250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 SER A 201 REMARK 465 THR A 202 REMARK 465 GLY A 203 REMARK 465 ASP A 436 REMARK 465 ARG A 437 REMARK 465 LEU A 438 REMARK 465 LYS A 439 REMARK 465 SER A 440 REMARK 465 LEU A 441 REMARK 465 ILE A 442 REMARK 465 LYS A 443 REMARK 465 TYR A 444 REMARK 465 LYS A 445 REMARK 465 GLY A 446 REMARK 465 TYR A 447 REMARK 465 GLN A 448 REMARK 465 VAL A 449 REMARK 465 PRO A 450 REMARK 465 PRO A 451 REMARK 465 ALA A 452 REMARK 465 GLU A 453 REMARK 465 LEU A 454 REMARK 465 GLU A 455 REMARK 465 SER A 456 REMARK 465 ILE A 457 REMARK 465 LEU A 458 REMARK 465 LEU A 459 REMARK 465 GLN A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 PHE A 463 REMARK 465 ILE A 464 REMARK 465 PHE A 465 REMARK 465 ASP A 466 REMARK 465 ALA A 467 REMARK 465 GLY A 468 REMARK 465 VAL A 469 REMARK 465 ALA A 470 REMARK 465 GLY A 471 REMARK 465 ILE A 472 REMARK 465 PRO A 473 REMARK 465 ASP A 474 REMARK 465 PRO A 475 REMARK 465 ASP A 476 REMARK 465 ALA A 477 REMARK 465 GLY A 478 REMARK 465 GLU A 479 REMARK 465 LEU A 480 REMARK 465 PRO A 481 REMARK 465 ALA A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 VAL A 485 REMARK 465 VAL A 486 REMARK 465 LEU A 487 REMARK 465 GLU A 488 REMARK 465 GLU A 489 REMARK 465 GLY A 490 REMARK 465 LYS A 491 REMARK 465 THR A 492 REMARK 465 MET A 493 REMARK 465 THR A 494 REMARK 465 GLU A 495 REMARK 465 GLN A 496 REMARK 465 GLU A 497 REMARK 465 VAL A 498 REMARK 465 MET A 499 REMARK 465 ASP A 500 REMARK 465 TYR A 501 REMARK 465 VAL A 502 REMARK 465 ALA A 503 REMARK 465 GLY A 504 REMARK 465 GLN A 505 REMARK 465 VAL A 506 REMARK 465 THR A 507 REMARK 465 ALA A 508 REMARK 465 SER A 509 REMARK 465 LYS A 510 REMARK 465 ARG A 511 REMARK 465 LEU A 512 REMARK 465 ARG A 513 REMARK 465 GLY A 514 REMARK 465 GLY A 515 REMARK 465 VAL A 516 REMARK 465 LYS A 517 REMARK 465 PHE A 518 REMARK 465 VAL A 519 REMARK 465 ASP A 520 REMARK 465 GLU A 521 REMARK 465 VAL A 522 REMARK 465 PRO A 523 REMARK 465 LYS A 524 REMARK 465 GLY A 525 REMARK 465 LEU A 526 REMARK 465 THR A 527 REMARK 465 GLY A 528 REMARK 465 LYS A 529 REMARK 465 ILE A 530 REMARK 465 ASP A 531 REMARK 465 ALA A 532 REMARK 465 ARG A 533 REMARK 465 LYS A 534 REMARK 465 ILE A 535 REMARK 465 ARG A 536 REMARK 465 GLU A 537 REMARK 465 ILE A 538 REMARK 465 LEU A 539 REMARK 465 MET A 540 REMARK 465 MET A 541 REMARK 465 GLY A 542 REMARK 465 LYS A 543 REMARK 465 LYS A 544 REMARK 465 SER A 545 REMARK 465 LYS A 546 REMARK 465 LEU A 547 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 153 50.91 -95.97 REMARK 500 ILE A 231 96.57 -68.60 REMARK 500 THR A 346 -68.58 69.02 REMARK 500 PHE A 368 -5.53 72.91 REMARK 500 THR A 378 -48.45 -135.74 REMARK 500 ASN A 404 72.35 -157.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QYA RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE ELECTRON DENSITY FOR RESIDUE 268 IS REMARK 999 UNAMBIGUOUS, AND IT CLEARLY SHOWS A PHENYLALANINE SIDE CHAIN. THIS REMARK 999 RESIDUE IS ALSO A PHE IN ALL OTHER KNOWN LUCIFERASES, SO IT COULD REMARK 999 HAVE BEEN AN ORIGINAL SEQUENCING ERROR OR IT SHOWS A SPONTANEOUS REMARK 999 MUTATION. DBREF 4M46 A 1 547 UNP Q5UFR2 Q5UFR2_9COLE 1 547 SEQADV 4M46 MET A -33 UNP Q5UFR2 INITIATING METHIONINE SEQADV 4M46 GLY A -32 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -31 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -30 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -29 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -28 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -27 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -26 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -25 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -24 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -23 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -22 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -21 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 LEU A -20 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 VAL A -19 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 PRO A -18 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 ARG A -17 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -16 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -15 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 HIS A -14 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 MET A -13 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 ALA A -12 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A -11 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 MET A -10 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 THR A -9 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -8 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -7 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLN A -6 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLN A -5 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 MET A -4 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -3 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 ARG A -2 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 GLY A -1 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 SER A 0 UNP Q5UFR2 EXPRESSION TAG SEQADV 4M46 PHE A 268 UNP Q5UFR2 CYS 268 SEE REMARK 999 SEQRES 1 A 581 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 581 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 581 GLY GLN GLN MET GLY ARG GLY SER MET GLU ASP ALA LYS SEQRES 4 A 581 ASN ILE MET HIS GLY PRO PRO PRO PHE TYR PRO LEU GLU SEQRES 5 A 581 ASP GLY THR ALA GLY GLU GLN LEU HIS LYS ALA MET LYS SEQRES 6 A 581 ARG TYR ALA GLN VAL PRO GLY THR ILE ALA PHE THR ASP SEQRES 7 A 581 ALA HIS ALA GLU VAL ASN ILE THR TYR SER GLU TYR PHE SEQRES 8 A 581 GLU MET ALA CYS ARG LEU ALA GLU THR MET LYS ARG TYR SEQRES 9 A 581 GLY LEU GLY LEU GLN HIS HIS ILE ALA VAL CYS SER GLU SEQRES 10 A 581 ASN SER LEU GLN PHE PHE MET PRO VAL CYS GLY ALA LEU SEQRES 11 A 581 PHE ILE GLY VAL GLY VAL ALA PRO THR ASN ASP ILE TYR SEQRES 12 A 581 ASN GLU ARG GLU LEU TYR ASN SER LEU SER ILE SER GLN SEQRES 13 A 581 PRO THR ILE VAL PHE CYS SER LYS ARG ALA LEU GLN LYS SEQRES 14 A 581 ILE LEU GLY VAL GLN LYS LYS LEU PRO ILE ILE GLN LYS SEQRES 15 A 581 ILE VAL ILE LEU ASP SER ARG GLU ASP TYR MET GLY LYS SEQRES 16 A 581 GLN SER MET TYR SER PHE ILE GLU SER HIS LEU PRO ALA SEQRES 17 A 581 GLY PHE ASN GLU TYR ASP TYR ILE PRO ASP SER PHE ASP SEQRES 18 A 581 ARG GLU THR ALA THR ALA LEU ILE MET ASN SER SER GLY SEQRES 19 A 581 SER THR GLY LEU PRO LYS GLY VAL GLU LEU THR HIS LYS SEQRES 20 A 581 ASN ILE CYS VAL ARG PHE SER HIS CYS ARG ASP PRO VAL SEQRES 21 A 581 PHE GLY ASN GLN ILE ILE PRO ASP THR ALA ILE LEU THR SEQRES 22 A 581 VAL ILE PRO PHE HIS HIS GLY PHE GLY MET PHE THR THR SEQRES 23 A 581 LEU GLY TYR LEU THR CYS GLY PHE ARG ILE VAL LEU MET SEQRES 24 A 581 TYR ARG PHE GLU GLU GLU LEU PHE LEU ARG SER LEU GLN SEQRES 25 A 581 ASP TYR LYS ILE GLN SER ALA LEU LEU VAL PRO THR LEU SEQRES 26 A 581 PHE SER PHE PHE ALA LYS SER THR LEU VAL ASP LYS TYR SEQRES 27 A 581 ASP LEU SER ASN LEU HIS GLU ILE ALA SER GLY GLY ALA SEQRES 28 A 581 PRO LEU ALA LYS GLU VAL GLY GLU ALA VAL ALA LYS ARG SEQRES 29 A 581 PHE LYS LEU PRO GLY ILE ARG GLN GLY TYR GLY LEU THR SEQRES 30 A 581 GLU THR THR SER ALA ILE ILE ILE THR PRO GLU GLY ASP SEQRES 31 A 581 ASP LYS PRO GLY ALA CYS GLY LYS VAL VAL PRO PHE PHE SEQRES 32 A 581 SER ALA LYS ILE VAL ASP LEU ASP THR GLY LYS THR LEU SEQRES 33 A 581 GLY VAL ASN GLN ARG GLY GLU LEU CYS VAL LYS GLY PRO SEQRES 34 A 581 MET ILE MET LYS GLY TYR VAL ASN ASN PRO GLU ALA THR SEQRES 35 A 581 SER ALA LEU ILE ASP LYS ASP GLY TRP LEU HIS SER GLY SEQRES 36 A 581 ASP ILE ALA TYR TYR ASP LYS ASP GLY HIS PHE PHE ILE SEQRES 37 A 581 VAL ASP ARG LEU LYS SER LEU ILE LYS TYR LYS GLY TYR SEQRES 38 A 581 GLN VAL PRO PRO ALA GLU LEU GLU SER ILE LEU LEU GLN SEQRES 39 A 581 HIS PRO PHE ILE PHE ASP ALA GLY VAL ALA GLY ILE PRO SEQRES 40 A 581 ASP PRO ASP ALA GLY GLU LEU PRO ALA ALA VAL VAL VAL SEQRES 41 A 581 LEU GLU GLU GLY LYS THR MET THR GLU GLN GLU VAL MET SEQRES 42 A 581 ASP TYR VAL ALA GLY GLN VAL THR ALA SER LYS ARG LEU SEQRES 43 A 581 ARG GLY GLY VAL LYS PHE VAL ASP GLU VAL PRO LYS GLY SEQRES 44 A 581 LEU THR GLY LYS ILE ASP ALA ARG LYS ILE ARG GLU ILE SEQRES 45 A 581 LEU MET MET GLY LYS LYS SER LYS LEU FORMUL 2 HOH *148(H2 O) HELIX 1 1 THR A 21 GLN A 35 1 15 HELIX 2 2 TYR A 53 GLY A 71 1 19 HELIX 3 3 PHE A 88 GLY A 99 1 12 HELIX 4 4 ASN A 110 GLN A 122 1 13 HELIX 5 5 ALA A 132 LYS A 141 1 10 HELIX 6 6 MET A 164 SER A 170 1 7 HELIX 7 7 HIS A 212 ARG A 223 1 12 HELIX 8 8 HIS A 245 GLY A 259 1 15 HELIX 9 9 GLU A 269 TYR A 280 1 12 HELIX 10 10 VAL A 288 SER A 298 1 11 HELIX 11 11 THR A 299 TYR A 304 5 6 HELIX 12 12 ALA A 320 PHE A 331 1 12 HELIX 13 13 THR A 343 THR A 346 5 4 HELIX 14 14 ASN A 404 ILE A 412 1 9 SHEET 1 A 5 MET A 8 HIS A 9 0 SHEET 2 A 5 SER A 370 VAL A 374 -1 O ALA A 371 N MET A 8 SHEET 3 A 5 GLY A 388 LYS A 393 -1 O CYS A 391 N LYS A 372 SHEET 4 A 5 LEU A 418 TYR A 426 -1 O ALA A 424 N GLY A 388 SHEET 5 A 5 PHE A 432 ILE A 434 -1 O PHE A 433 N TYR A 425 SHEET 1 B 6 ASN A 50 THR A 52 0 SHEET 2 B 6 ILE A 40 ASP A 44 -1 N ALA A 41 O ILE A 51 SHEET 3 B 6 ARG A 261 LEU A 264 1 O LEU A 264 N THR A 43 SHEET 4 B 6 ALA A 236 THR A 239 1 N ILE A 237 O ARG A 261 SHEET 5 B 6 SER A 284 LEU A 286 1 O LEU A 286 N LEU A 238 SHEET 6 B 6 GLU A 311 ALA A 313 1 O ALA A 313 N ALA A 285 SHEET 1 C 5 GLY A 101 PRO A 104 0 SHEET 2 C 5 HIS A 77 CYS A 81 1 N ILE A 78 O GLY A 101 SHEET 3 C 5 ILE A 125 CYS A 128 1 O PHE A 127 N ALA A 79 SHEET 4 C 5 LYS A 148 ILE A 151 1 O LYS A 148 N VAL A 126 SHEET 5 C 5 GLN A 162 SER A 163 1 O GLN A 162 N ILE A 151 SHEET 1 D 3 THR A 192 SER A 198 0 SHEET 2 D 3 LYS A 206 THR A 211 -1 O VAL A 208 N MET A 196 SHEET 3 D 3 GLY A 400 TYR A 401 -1 O GLY A 400 N GLU A 209 SHEET 1 E 3 GLY A 339 GLY A 341 0 SHEET 2 E 3 ALA A 348 ILE A 351 -1 O ILE A 350 N TYR A 340 SHEET 3 E 3 LYS A 364 VAL A 365 -1 O LYS A 364 N ILE A 351 CRYST1 85.100 85.100 96.630 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010349 0.00000