data_4M4O # _entry.id 4M4O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4M4O pdb_00004m4o 10.2210/pdb4m4o/pdb NDB NA2625 ? ? RCSB RCSB081461 ? ? WWPDB D_1000081461 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-032671 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4M4O _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-08-07 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Padlan, F.C.' 2 'Toro, R.' 3 'Girvin, M.' 4 'Almo, S.C.' 5 'New York Structural Genomics Research Consortium (NYSGRC)' 6 # _citation.id primary _citation.title 'Crystal structure of the aptamer minE-lysozyme complex' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malashkevich, V.N.' 1 ? primary 'Padlan, F.C.' 2 ? primary 'Toro, R.' 3 ? primary 'Girvin, M.' 4 ? primary 'Almo, S.C.' 5 ? # _cell.length_a 141.216 _cell.length_b 30.609 _cell.length_c 89.817 _cell.angle_alpha 90.000 _cell.angle_beta 122.450 _cell.angle_gamma 90.000 _cell.entry_id 4M4O _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 4M4O _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lysozyme C' 14331.160 1 3.2.1.17 ? ? ? 2 polymer syn 'RNA (59-MER)' 18999.311 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 220 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C, Allergen Gal d IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; A NYSGRC-032671 2 polyribonucleotide no no GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n 2 1 G n 2 2 G n 2 3 G n 2 4 U n 2 5 U n 2 6 C n 2 7 A n 2 8 U n 2 9 C n 2 10 A n 2 11 G n 2 12 G n 2 13 G n 2 14 C n 2 15 U n 2 16 A n 2 17 A n 2 18 A n 2 19 G n 2 20 A n 2 21 G n 2 22 U n 2 23 G n 2 24 C n 2 25 A n 2 26 G n 2 27 A n 2 28 G n 2 29 U n 2 30 U n 2 31 A n 2 32 C n 2 33 U n 2 34 U n 2 35 A n 2 36 G n 2 37 U n 2 38 U n 2 39 C n 2 40 A n 2 41 C n 2 42 U n 2 43 G n 2 44 C n 2 45 A n 2 46 G n 2 47 A n 2 48 C n 2 49 U n 2 50 U n 2 51 G n 2 52 A n 2 53 C n 2 54 G n 2 55 A n 2 56 A n 2 57 C n 2 58 C n 2 59 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bantam,chickens _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LYZ, LYZ1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Gallus gallus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)CODON+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-PSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP LYSC_CHICK P00698 1 ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; 19 ? 2 PDB 4M4O 4M4O 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M4O A 1 ? 129 ? P00698 19 ? 147 ? 1 129 2 2 4M4O B 1 ? 59 ? 4M4O 1 ? 59 ? 1 59 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4M4O _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.17M Sodium Acetate, 0.085M Tris-HCl, pH 8.5, 25.5% PEG-4000, 15% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-03-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 1.075 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 4M4O _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 50.000 _reflns.number_obs 22172 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 12.000 _reflns.pdbx_chi_squared 1.304 _reflns.pdbx_redundancy 3.100 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.030 ? ? ? 0.348 ? ? 0.858 2.700 ? 1010 90.300 1 1 2.030 2.070 ? ? ? 0.308 ? ? 0.966 2.900 ? 1043 96.500 2 1 2.070 2.110 ? ? ? 0.281 ? ? 0.927 3.000 ? 1096 98.600 3 1 2.110 2.150 ? ? ? 0.282 ? ? 0.949 3.100 ? 1093 99.800 4 1 2.150 2.200 ? ? ? 0.238 ? ? 0.985 3.100 ? 1124 100.000 5 1 2.200 2.250 ? ? ? 0.212 ? ? 1.033 3.200 ? 1100 99.800 6 1 2.250 2.310 ? ? ? 0.172 ? ? 1.101 3.200 ? 1111 99.900 7 1 2.310 2.370 ? ? ? 0.161 ? ? 1.084 3.200 ? 1124 100.000 8 1 2.370 2.440 ? ? ? 0.143 ? ? 1.125 3.200 ? 1088 100.000 9 1 2.440 2.520 ? ? ? 0.121 ? ? 1.204 3.200 ? 1127 99.900 10 1 2.520 2.610 ? ? ? 0.106 ? ? 1.154 3.200 ? 1115 99.700 11 1 2.610 2.710 ? ? ? 0.085 ? ? 1.193 3.200 ? 1117 99.900 12 1 2.710 2.840 ? ? ? 0.076 ? ? 1.300 3.200 ? 1102 99.900 13 1 2.840 2.990 ? ? ? 0.059 ? ? 1.318 3.200 ? 1129 99.600 14 1 2.990 3.170 ? ? ? 0.049 ? ? 1.447 3.100 ? 1110 99.600 15 1 3.170 3.420 ? ? ? 0.046 ? ? 1.724 3.200 ? 1138 99.600 16 1 3.420 3.760 ? ? ? 0.048 ? ? 2.285 3.100 ? 1120 99.100 17 1 3.760 4.310 ? ? ? 0.046 ? ? 2.521 3.100 ? 1139 99.500 18 1 4.310 5.430 ? ? ? 0.033 ? ? 1.442 3.000 ? 1123 98.300 19 1 5.430 50.000 ? ? ? 0.027 ? ? 1.255 3.100 ? 1163 95.400 20 1 # _refine.entry_id 4M4O _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 37.9800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.9000 _refine.ls_number_reflns_obs 22156 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1822 _refine.ls_R_factor_R_work 0.1809 _refine.ls_wR_factor_R_work 0.1771 _refine.ls_R_factor_R_free 0.2066 _refine.ls_wR_factor_R_free 0.2040 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1128 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 41.1093 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 24.6600 _refine.aniso_B[2][2] -11.2100 _refine.aniso_B[3][3] -13.4400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 8.8100 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9620 _refine.correlation_coeff_Fo_to_Fc_free 0.9510 _refine.overall_SU_R_Cruickshank_DPI 0.0373 _refine.overall_SU_R_free 0.0308 _refine.pdbx_overall_ESU_R 0.0370 _refine.pdbx_overall_ESU_R_Free 0.0310 _refine.overall_SU_ML 0.0740 _refine.overall_SU_B 4.9570 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1JKB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8844 _refine.B_iso_max 122.510 _refine.B_iso_min 17.480 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 1261 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 2485 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 37.9800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2448 0.008 0.015 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3606 1.162 1.526 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 132 6.194 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 51 36.770 22.745 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 170 14.045 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 16.985 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 382 0.089 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1418 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 519 1.478 4.754 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 648 2.267 76.094 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1929 2.125 8.004 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0010 _refine_ls_shell.d_res_low 2.0530 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 92.8200 _refine_ls_shell.number_reflns_R_work 1421 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2150 _refine_ls_shell.R_factor_R_free 0.2730 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1499 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4M4O _struct.title 'Crystal structure of the aptamer minE-lysozyme complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M4O _struct_keywords.text ;STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, protein-RNA complex, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE-RNA complex ; _struct_keywords.pdbx_keywords HYDROLASE/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 4 PRO A 79 ? LEU A 84 ? PRO A 79 LEU A 84 5 ? 6 HELX_P HELX_P5 5 ILE A 88 ? SER A 100 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 8 ASP A 119 ? ARG A 125 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.057 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc1 metalc ? ? B A 17 OP2 ? ? ? 1_555 D MG . MG ? ? B A 17 B MG 102 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc2 metalc ? ? B G 21 O6 ? ? ? 1_555 C NA . NA ? ? B G 21 B NA 101 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 211 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? B NA 101 B HOH 212 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 102 B HOH 239 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 102 B HOH 259 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 102 B HOH 260 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 102 B HOH 261 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 102 B HOH 262 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 103 B HOH 245 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 103 B HOH 246 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 103 B HOH 247 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 103 B HOH 248 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 103 B HOH 277 1_555 ? ? ? ? ? ? ? 2.137 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 59 N3 ? ? B G 1 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 59 O2 ? ? B G 1 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 59 N4 ? ? B G 1 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 58 N3 ? ? B G 2 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 58 O2 ? ? B G 2 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 58 N4 ? ? B G 2 B C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 56 N1 ? ? B U 4 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 56 N6 ? ? B U 4 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 55 N1 ? ? B U 5 B A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 55 N6 ? ? B U 5 B A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 6 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 6 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 6 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B A 7 N1 ? ? ? 1_555 B C 53 N4 ? ? B A 7 B C 53 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog18 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 52 N1 ? ? B U 8 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 52 N6 ? ? B U 8 B A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 9 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 9 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 9 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B A 10 N1 ? ? ? 1_555 B U 50 N3 ? ? B A 10 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B A 10 N6 ? ? ? 1_555 B U 50 O4 ? ? B A 10 B U 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 11 N1 ? ? ? 1_555 B U 49 O2 ? ? B G 11 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? B G 11 O6 ? ? ? 1_555 B U 49 N3 ? ? B G 11 B U 49 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 12 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 12 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 12 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B G 13 N1 ? ? ? 1_555 B A 47 N1 ? ? B G 13 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? B G 13 O6 ? ? ? 1_555 B A 47 N6 ? ? B G 13 B A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 46 N1 ? ? B C 14 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 46 O6 ? ? B C 14 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 46 N2 ? ? B C 14 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B U 15 N3 ? ? ? 1_555 B A 45 N1 ? ? B U 15 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 15 O4 ? ? ? 1_555 B A 45 N6 ? ? B U 15 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 18 B U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog38 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 22 O2 ? ? B A 18 B U 22 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog39 hydrog ? ? B G 19 N2 ? ? ? 1_555 B U 38 O2 ? ? B G 19 B U 38 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog40 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 44 N3 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 44 O2 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 44 N4 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 24 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 24 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 24 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B A 25 N1 ? ? ? 1_555 B U 42 N3 ? ? B A 25 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B A 25 N6 ? ? ? 1_555 B U 42 O4 ? ? B A 25 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 26 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 26 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 26 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 28 N1 ? ? ? 1_555 B C 39 N3 ? ? B G 28 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 28 N2 ? ? ? 1_555 B C 39 O2 ? ? B G 28 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 28 O6 ? ? ? 1_555 B C 39 N4 ? ? B G 28 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 28 N2 ? ? ? 1_555 B A 40 N7 ? ? B G 28 B A 40 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? B U 30 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 30 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B U 30 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 30 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B A 31 N6 ? ? ? 1_555 B C 39 O2 ? ? B A 31 B C 39 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog58 hydrog ? ? B C 32 N3 ? ? ? 1_555 B G 36 N1 ? ? B C 32 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 32 N4 ? ? ? 1_555 B G 36 O6 ? ? B C 32 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 32 O2 ? ? ? 1_555 B G 36 N2 ? ? B C 32 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 A 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 A 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 A 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NA 101 ? 5 'BINDING SITE FOR RESIDUE NA B 101' AC2 Software B MG 102 ? 7 'BINDING SITE FOR RESIDUE MG B 102' AC3 Software B MG 103 ? 5 'BINDING SITE FOR RESIDUE MG B 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G B 21 ? G B 21 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH B 202 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH B 206 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH B 211 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH B 212 . ? 1_555 ? 6 AC2 7 U B 15 ? U B 15 . ? 1_555 ? 7 AC2 7 A B 17 ? A B 17 . ? 1_555 ? 8 AC2 7 HOH G . ? HOH B 239 . ? 1_555 ? 9 AC2 7 HOH G . ? HOH B 259 . ? 1_555 ? 10 AC2 7 HOH G . ? HOH B 260 . ? 1_555 ? 11 AC2 7 HOH G . ? HOH B 261 . ? 1_555 ? 12 AC2 7 HOH G . ? HOH B 262 . ? 1_555 ? 13 AC3 5 HOH G . ? HOH B 245 . ? 1_555 ? 14 AC3 5 HOH G . ? HOH B 246 . ? 1_555 ? 15 AC3 5 HOH G . ? HOH B 247 . ? 1_555 ? 16 AC3 5 HOH G . ? HOH B 248 . ? 1_555 ? 17 AC3 5 HOH G . ? HOH B 277 . ? 1_555 ? # _atom_sites.entry_id 4M4O _atom_sites.fract_transf_matrix[1][1] 0.007081 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004503 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032670 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013194 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 G 3 3 3 G G B . n B 2 4 U 4 4 4 U U B . n B 2 5 U 5 5 5 U U B . n B 2 6 C 6 6 6 C C B . n B 2 7 A 7 7 7 A A B . n B 2 8 U 8 8 8 U U B . n B 2 9 C 9 9 9 C C B . n B 2 10 A 10 10 10 A A B . n B 2 11 G 11 11 11 G G B . n B 2 12 G 12 12 12 G G B . n B 2 13 G 13 13 13 G G B . n B 2 14 C 14 14 14 C C B . n B 2 15 U 15 15 15 U U B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 A 18 18 18 A A B . n B 2 19 G 19 19 19 G G B . n B 2 20 A 20 20 20 A A B . n B 2 21 G 21 21 21 G G B . n B 2 22 U 22 22 22 U U B . n B 2 23 G 23 23 23 G G B . n B 2 24 C 24 24 24 C C B . n B 2 25 A 25 25 25 A A B . n B 2 26 G 26 26 26 G G B . n B 2 27 A 27 27 27 A A B . n B 2 28 G 28 28 28 G G B . n B 2 29 U 29 29 29 U U B . n B 2 30 U 30 30 30 U U B . n B 2 31 A 31 31 31 A A B . n B 2 32 C 32 32 32 C C B . n B 2 33 U 33 33 33 U U B . n B 2 34 U 34 34 34 U U B . n B 2 35 A 35 35 35 A A B . n B 2 36 G 36 36 36 G G B . n B 2 37 U 37 37 37 U U B . n B 2 38 U 38 38 38 U U B . n B 2 39 C 39 39 39 C C B . n B 2 40 A 40 40 40 A A B . n B 2 41 C 41 41 41 C C B . n B 2 42 U 42 42 42 U U B . n B 2 43 G 43 43 43 G G B . n B 2 44 C 44 44 44 C C B . n B 2 45 A 45 45 45 A A B . n B 2 46 G 46 46 46 G G B . n B 2 47 A 47 47 47 A A B . n B 2 48 C 48 48 48 C C B . n B 2 49 U 49 49 49 U U B . n B 2 50 U 50 50 50 U U B . n B 2 51 G 51 51 51 G G B . n B 2 52 A 52 52 52 A A B . n B 2 53 C 53 53 53 C C B . n B 2 54 G 54 54 54 G G B . n B 2 55 A 55 55 55 A A B . n B 2 56 A 56 56 56 A A B . n B 2 57 C 57 57 57 C C B . n B 2 58 C 58 58 58 C C B . n B 2 59 C 59 59 59 C C B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 101 502 NA NA B . D 4 MG 1 102 500 MG MG B . E 4 MG 1 103 501 MG MG B . F 5 HOH 1 201 2 HOH HOH A . F 5 HOH 2 202 3 HOH HOH A . F 5 HOH 3 203 4 HOH HOH A . F 5 HOH 4 204 6 HOH HOH A . F 5 HOH 5 205 7 HOH HOH A . F 5 HOH 6 206 8 HOH HOH A . F 5 HOH 7 207 9 HOH HOH A . F 5 HOH 8 208 11 HOH HOH A . F 5 HOH 9 209 14 HOH HOH A . F 5 HOH 10 210 15 HOH HOH A . F 5 HOH 11 211 16 HOH HOH A . F 5 HOH 12 212 19 HOH HOH A . F 5 HOH 13 213 92 HOH HOH A . F 5 HOH 14 214 99 HOH HOH A . F 5 HOH 15 215 101 HOH HOH A . F 5 HOH 16 216 106 HOH HOH A . F 5 HOH 17 217 116 HOH HOH A . F 5 HOH 18 218 124 HOH HOH A . F 5 HOH 19 219 127 HOH HOH A . F 5 HOH 20 220 129 HOH HOH A . F 5 HOH 21 221 134 HOH HOH A . F 5 HOH 22 222 149 HOH HOH A . F 5 HOH 23 223 151 HOH HOH A . F 5 HOH 24 224 152 HOH HOH A . F 5 HOH 25 225 153 HOH HOH A . F 5 HOH 26 226 154 HOH HOH A . F 5 HOH 27 227 166 HOH HOH A . F 5 HOH 28 228 177 HOH HOH A . F 5 HOH 29 229 191 HOH HOH A . F 5 HOH 30 230 192 HOH HOH A . F 5 HOH 31 231 219 HOH HOH A . F 5 HOH 32 232 220 HOH HOH A . F 5 HOH 33 233 221 HOH HOH A . F 5 HOH 34 234 222 HOH HOH A . F 5 HOH 35 235 223 HOH HOH A . F 5 HOH 36 236 224 HOH HOH A . F 5 HOH 37 237 226 HOH HOH A . F 5 HOH 38 238 227 HOH HOH A . F 5 HOH 39 239 228 HOH HOH A . F 5 HOH 40 240 230 HOH HOH A . F 5 HOH 41 241 231 HOH HOH A . F 5 HOH 42 242 232 HOH HOH A . F 5 HOH 43 243 233 HOH HOH A . F 5 HOH 44 244 234 HOH HOH A . F 5 HOH 45 245 235 HOH HOH A . F 5 HOH 46 246 237 HOH HOH A . F 5 HOH 47 247 238 HOH HOH A . F 5 HOH 48 248 239 HOH HOH A . F 5 HOH 49 249 241 HOH HOH A . F 5 HOH 50 250 242 HOH HOH A . F 5 HOH 51 251 243 HOH HOH A . F 5 HOH 52 252 244 HOH HOH A . F 5 HOH 53 253 246 HOH HOH A . F 5 HOH 54 254 247 HOH HOH A . F 5 HOH 55 255 248 HOH HOH A . F 5 HOH 56 256 249 HOH HOH A . F 5 HOH 57 257 250 HOH HOH A . F 5 HOH 58 258 251 HOH HOH A . F 5 HOH 59 259 252 HOH HOH A . F 5 HOH 60 260 253 HOH HOH A . F 5 HOH 61 261 258 HOH HOH A . F 5 HOH 62 262 259 HOH HOH A . F 5 HOH 63 263 261 HOH HOH A . F 5 HOH 64 264 262 HOH HOH A . F 5 HOH 65 265 263 HOH HOH A . F 5 HOH 66 266 264 HOH HOH A . F 5 HOH 67 267 266 HOH HOH A . F 5 HOH 68 268 268 HOH HOH A . F 5 HOH 69 269 270 HOH HOH A . F 5 HOH 70 270 271 HOH HOH A . F 5 HOH 71 271 272 HOH HOH A . F 5 HOH 72 272 273 HOH HOH A . F 5 HOH 73 273 274 HOH HOH A . F 5 HOH 74 274 276 HOH HOH A . F 5 HOH 75 275 279 HOH HOH A . F 5 HOH 76 276 280 HOH HOH A . F 5 HOH 77 277 281 HOH HOH A . F 5 HOH 78 278 284 HOH HOH A . F 5 HOH 79 279 285 HOH HOH A . F 5 HOH 80 280 291 HOH HOH A . F 5 HOH 81 281 292 HOH HOH A . F 5 HOH 82 282 293 HOH HOH A . F 5 HOH 83 283 295 HOH HOH A . F 5 HOH 84 284 296 HOH HOH A . F 5 HOH 85 285 297 HOH HOH A . F 5 HOH 86 286 299 HOH HOH A . F 5 HOH 87 287 300 HOH HOH A . F 5 HOH 88 288 301 HOH HOH A . F 5 HOH 89 289 302 HOH HOH A . F 5 HOH 90 290 305 HOH HOH A . F 5 HOH 91 291 306 HOH HOH A . F 5 HOH 92 292 307 HOH HOH A . F 5 HOH 93 293 310 HOH HOH A . F 5 HOH 94 294 311 HOH HOH A . F 5 HOH 95 295 314 HOH HOH A . F 5 HOH 96 296 315 HOH HOH A . F 5 HOH 97 297 317 HOH HOH A . F 5 HOH 98 298 322 HOH HOH A . F 5 HOH 99 299 323 HOH HOH A . F 5 HOH 100 300 324 HOH HOH A . F 5 HOH 101 301 325 HOH HOH A . F 5 HOH 102 302 327 HOH HOH A . F 5 HOH 103 303 329 HOH HOH A . F 5 HOH 104 304 330 HOH HOH A . F 5 HOH 105 305 334 HOH HOH A . F 5 HOH 106 306 335 HOH HOH A . F 5 HOH 107 307 341 HOH HOH A . F 5 HOH 108 308 344 HOH HOH A . F 5 HOH 109 309 345 HOH HOH A . F 5 HOH 110 310 346 HOH HOH A . F 5 HOH 111 311 347 HOH HOH A . F 5 HOH 112 312 348 HOH HOH A . F 5 HOH 113 313 349 HOH HOH A . F 5 HOH 114 314 350 HOH HOH A . F 5 HOH 115 315 352 HOH HOH A . F 5 HOH 116 316 355 HOH HOH A . F 5 HOH 117 317 356 HOH HOH A . F 5 HOH 118 318 358 HOH HOH A . F 5 HOH 119 319 362 HOH HOH A . F 5 HOH 120 320 364 HOH HOH A . F 5 HOH 121 321 374 HOH HOH A . F 5 HOH 122 322 375 HOH HOH A . F 5 HOH 123 323 376 HOH HOH A . F 5 HOH 124 324 379 HOH HOH A . F 5 HOH 125 325 381 HOH HOH A . F 5 HOH 126 326 385 HOH HOH A . F 5 HOH 127 327 386 HOH HOH A . F 5 HOH 128 328 390 HOH HOH A . F 5 HOH 129 329 397 HOH HOH A . F 5 HOH 130 330 398 HOH HOH A . F 5 HOH 131 331 399 HOH HOH A . F 5 HOH 132 332 401 HOH HOH A . F 5 HOH 133 333 403 HOH HOH A . F 5 HOH 134 334 407 HOH HOH A . F 5 HOH 135 335 409 HOH HOH A . F 5 HOH 136 336 410 HOH HOH A . F 5 HOH 137 337 411 HOH HOH A . F 5 HOH 138 338 412 HOH HOH A . F 5 HOH 139 339 413 HOH HOH A . F 5 HOH 140 340 414 HOH HOH A . G 5 HOH 1 201 12 HOH HOH B . G 5 HOH 2 202 73 HOH HOH B . G 5 HOH 3 203 74 HOH HOH B . G 5 HOH 4 204 88 HOH HOH B . G 5 HOH 5 205 104 HOH HOH B . G 5 HOH 6 206 120 HOH HOH B . G 5 HOH 7 207 121 HOH HOH B . G 5 HOH 8 208 128 HOH HOH B . G 5 HOH 9 209 144 HOH HOH B . G 5 HOH 10 210 155 HOH HOH B . G 5 HOH 11 211 160 HOH HOH B . G 5 HOH 12 212 167 HOH HOH B . G 5 HOH 13 213 170 HOH HOH B . G 5 HOH 14 214 172 HOH HOH B . G 5 HOH 15 215 175 HOH HOH B . G 5 HOH 16 216 176 HOH HOH B . G 5 HOH 17 217 225 HOH HOH B . G 5 HOH 18 218 229 HOH HOH B . G 5 HOH 19 219 236 HOH HOH B . G 5 HOH 20 220 240 HOH HOH B . G 5 HOH 21 221 245 HOH HOH B . G 5 HOH 22 222 254 HOH HOH B . G 5 HOH 23 223 255 HOH HOH B . G 5 HOH 24 224 256 HOH HOH B . G 5 HOH 25 225 257 HOH HOH B . G 5 HOH 26 226 260 HOH HOH B . G 5 HOH 27 227 265 HOH HOH B . G 5 HOH 28 228 267 HOH HOH B . G 5 HOH 29 229 269 HOH HOH B . G 5 HOH 30 230 282 HOH HOH B . G 5 HOH 31 231 283 HOH HOH B . G 5 HOH 32 232 286 HOH HOH B . G 5 HOH 33 233 289 HOH HOH B . G 5 HOH 34 234 290 HOH HOH B . G 5 HOH 35 235 303 HOH HOH B . G 5 HOH 36 236 308 HOH HOH B . G 5 HOH 37 237 312 HOH HOH B . G 5 HOH 38 238 313 HOH HOH B . G 5 HOH 39 239 319 HOH HOH B . G 5 HOH 40 240 320 HOH HOH B . G 5 HOH 41 241 328 HOH HOH B . G 5 HOH 42 242 331 HOH HOH B . G 5 HOH 43 243 332 HOH HOH B . G 5 HOH 44 244 333 HOH HOH B . G 5 HOH 45 245 336 HOH HOH B . G 5 HOH 46 246 337 HOH HOH B . G 5 HOH 47 247 338 HOH HOH B . G 5 HOH 48 248 339 HOH HOH B . G 5 HOH 49 249 340 HOH HOH B . G 5 HOH 50 250 342 HOH HOH B . G 5 HOH 51 251 343 HOH HOH B . G 5 HOH 52 252 351 HOH HOH B . G 5 HOH 53 253 357 HOH HOH B . G 5 HOH 54 254 359 HOH HOH B . G 5 HOH 55 255 360 HOH HOH B . G 5 HOH 56 256 361 HOH HOH B . G 5 HOH 57 257 363 HOH HOH B . G 5 HOH 58 258 367 HOH HOH B . G 5 HOH 59 259 369 HOH HOH B . G 5 HOH 60 260 370 HOH HOH B . G 5 HOH 61 261 371 HOH HOH B . G 5 HOH 62 262 372 HOH HOH B . G 5 HOH 63 263 377 HOH HOH B . G 5 HOH 64 264 378 HOH HOH B . G 5 HOH 65 265 380 HOH HOH B . G 5 HOH 66 266 387 HOH HOH B . G 5 HOH 67 267 388 HOH HOH B . G 5 HOH 68 268 389 HOH HOH B . G 5 HOH 69 269 391 HOH HOH B . G 5 HOH 70 270 392 HOH HOH B . G 5 HOH 71 271 393 HOH HOH B . G 5 HOH 72 272 394 HOH HOH B . G 5 HOH 73 273 395 HOH HOH B . G 5 HOH 74 274 396 HOH HOH B . G 5 HOH 75 275 400 HOH HOH B . G 5 HOH 76 276 404 HOH HOH B . G 5 HOH 77 277 406 HOH HOH B . G 5 HOH 78 278 408 HOH HOH B . G 5 HOH 79 279 415 HOH HOH B . G 5 HOH 80 280 416 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? B A 17 ? B A 17 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 90.0 ? 2 OP2 ? B A 17 ? B A 17 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 259 ? 1_555 92.5 ? 3 O ? G HOH . ? B HOH 239 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 259 ? 1_555 165.3 ? 4 OP2 ? B A 17 ? B A 17 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 260 ? 1_555 95.7 ? 5 O ? G HOH . ? B HOH 239 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 260 ? 1_555 85.6 ? 6 O ? G HOH . ? B HOH 259 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 260 ? 1_555 79.7 ? 7 OP2 ? B A 17 ? B A 17 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 261 ? 1_555 173.5 ? 8 O ? G HOH . ? B HOH 239 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 261 ? 1_555 84.6 ? 9 O ? G HOH . ? B HOH 259 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 261 ? 1_555 91.9 ? 10 O ? G HOH . ? B HOH 260 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 261 ? 1_555 80.3 ? 11 OP2 ? B A 17 ? B A 17 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 262 ? 1_555 99.1 ? 12 O ? G HOH . ? B HOH 239 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 262 ? 1_555 90.7 ? 13 O ? G HOH . ? B HOH 259 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 262 ? 1_555 103.2 ? 14 O ? G HOH . ? B HOH 260 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 262 ? 1_555 164.7 ? 15 O ? G HOH . ? B HOH 261 ? 1_555 MG ? D MG . ? B MG 102 ? 1_555 O ? G HOH . ? B HOH 262 ? 1_555 84.5 ? 16 O6 ? B G 21 ? B G 21 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 202 ? 1_555 83.8 ? 17 O6 ? B G 21 ? B G 21 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 206 ? 1_555 84.3 ? 18 O ? G HOH . ? B HOH 202 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 206 ? 1_555 164.8 ? 19 O6 ? B G 21 ? B G 21 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 211 ? 1_555 83.7 ? 20 O ? G HOH . ? B HOH 202 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 211 ? 1_555 104.1 ? 21 O ? G HOH . ? B HOH 206 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 211 ? 1_555 83.9 ? 22 O6 ? B G 21 ? B G 21 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 93.4 ? 23 O ? G HOH . ? B HOH 202 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 89.7 ? 24 O ? G HOH . ? B HOH 206 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 81.6 ? 25 O ? G HOH . ? B HOH 211 ? 1_555 NA ? C NA . ? B NA 101 ? 1_555 O ? G HOH . ? B HOH 212 ? 1_555 165.4 ? 26 O ? G HOH . ? B HOH 245 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 246 ? 1_555 90.4 ? 27 O ? G HOH . ? B HOH 245 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 247 ? 1_555 93.3 ? 28 O ? G HOH . ? B HOH 246 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 247 ? 1_555 80.8 ? 29 O ? G HOH . ? B HOH 245 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 85.2 ? 30 O ? G HOH . ? B HOH 246 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 89.7 ? 31 O ? G HOH . ? B HOH 247 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 248 ? 1_555 170.3 ? 32 O ? G HOH . ? B HOH 245 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 277 ? 1_555 91.4 ? 33 O ? G HOH . ? B HOH 246 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 277 ? 1_555 171.6 ? 34 O ? G HOH . ? B HOH 247 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 277 ? 1_555 107.4 ? 35 O ? G HOH . ? B HOH 248 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? G HOH . ? B HOH 277 ? 1_555 82.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-18 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -11.9357 -27.2567 58.1134 0.0490 0.0035 0.0542 -0.0088 -0.0202 0.0116 0.5496 0.8228 1.5245 -0.0383 0.2409 0.2682 -0.0638 0.0256 0.0382 -0.0032 0.0051 0.0781 -0.0318 -0.0068 0.0192 'X-RAY DIFFRACTION' 2 ? refined 3.3064 -19.3721 15.4927 0.1093 0.2050 0.0942 -0.0705 -0.0226 0.0138 1.2834 0.0802 0.9505 0.2848 -1.1013 -0.2523 -0.0242 0.0786 -0.0544 0.0831 0.0829 0.0072 -0.0251 0.0417 -0.0926 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 129 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 59 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 101 B 103 ? . . . . ? # _pdbx_phasing_MR.entry_id 4M4O _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 37.980 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 37.980 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHASER 2.3.0 'Tue Oct 18 19:46:39 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CBASS . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B G 1 ? ? OP3 B G 1 ? ? 1.487 1.607 -0.120 0.012 N 2 1 "O3'" B A 16 ? ? P B A 17 ? ? 1.529 1.607 -0.078 0.012 Y 3 1 "O3'" B C 32 ? ? P B U 33 ? ? 1.519 1.607 -0.088 0.012 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 84 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -105.90 _pdbx_validate_torsion.psi 64.06 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 G OP3 O N N 160 G P P N N 161 G OP1 O N N 162 G OP2 O N N 163 G "O5'" O N N 164 G "C5'" C N N 165 G "C4'" C N R 166 G "O4'" O N N 167 G "C3'" C N S 168 G "O3'" O N N 169 G "C2'" C N R 170 G "O2'" O N N 171 G "C1'" C N R 172 G N9 N Y N 173 G C8 C Y N 174 G N7 N Y N 175 G C5 C Y N 176 G C6 C N N 177 G O6 O N N 178 G N1 N N N 179 G C2 C N N 180 G N2 N N N 181 G N3 N N N 182 G C4 C Y N 183 G HOP3 H N N 184 G HOP2 H N N 185 G "H5'" H N N 186 G "H5''" H N N 187 G "H4'" H N N 188 G "H3'" H N N 189 G "HO3'" H N N 190 G "H2'" H N N 191 G "HO2'" H N N 192 G "H1'" H N N 193 G H8 H N N 194 G H1 H N N 195 G H21 H N N 196 G H22 H N N 197 GLN N N N N 198 GLN CA C N S 199 GLN C C N N 200 GLN O O N N 201 GLN CB C N N 202 GLN CG C N N 203 GLN CD C N N 204 GLN OE1 O N N 205 GLN NE2 N N N 206 GLN OXT O N N 207 GLN H H N N 208 GLN H2 H N N 209 GLN HA H N N 210 GLN HB2 H N N 211 GLN HB3 H N N 212 GLN HG2 H N N 213 GLN HG3 H N N 214 GLN HE21 H N N 215 GLN HE22 H N N 216 GLN HXT H N N 217 GLU N N N N 218 GLU CA C N S 219 GLU C C N N 220 GLU O O N N 221 GLU CB C N N 222 GLU CG C N N 223 GLU CD C N N 224 GLU OE1 O N N 225 GLU OE2 O N N 226 GLU OXT O N N 227 GLU H H N N 228 GLU H2 H N N 229 GLU HA H N N 230 GLU HB2 H N N 231 GLU HB3 H N N 232 GLU HG2 H N N 233 GLU HG3 H N N 234 GLU HE2 H N N 235 GLU HXT H N N 236 GLY N N N N 237 GLY CA C N N 238 GLY C C N N 239 GLY O O N N 240 GLY OXT O N N 241 GLY H H N N 242 GLY H2 H N N 243 GLY HA2 H N N 244 GLY HA3 H N N 245 GLY HXT H N N 246 HIS N N N N 247 HIS CA C N S 248 HIS C C N N 249 HIS O O N N 250 HIS CB C N N 251 HIS CG C Y N 252 HIS ND1 N Y N 253 HIS CD2 C Y N 254 HIS CE1 C Y N 255 HIS NE2 N Y N 256 HIS OXT O N N 257 HIS H H N N 258 HIS H2 H N N 259 HIS HA H N N 260 HIS HB2 H N N 261 HIS HB3 H N N 262 HIS HD1 H N N 263 HIS HD2 H N N 264 HIS HE1 H N N 265 HIS HE2 H N N 266 HIS HXT H N N 267 HOH O O N N 268 HOH H1 H N N 269 HOH H2 H N N 270 ILE N N N N 271 ILE CA C N S 272 ILE C C N N 273 ILE O O N N 274 ILE CB C N S 275 ILE CG1 C N N 276 ILE CG2 C N N 277 ILE CD1 C N N 278 ILE OXT O N N 279 ILE H H N N 280 ILE H2 H N N 281 ILE HA H N N 282 ILE HB H N N 283 ILE HG12 H N N 284 ILE HG13 H N N 285 ILE HG21 H N N 286 ILE HG22 H N N 287 ILE HG23 H N N 288 ILE HD11 H N N 289 ILE HD12 H N N 290 ILE HD13 H N N 291 ILE HXT H N N 292 LEU N N N N 293 LEU CA C N S 294 LEU C C N N 295 LEU O O N N 296 LEU CB C N N 297 LEU CG C N N 298 LEU CD1 C N N 299 LEU CD2 C N N 300 LEU OXT O N N 301 LEU H H N N 302 LEU H2 H N N 303 LEU HA H N N 304 LEU HB2 H N N 305 LEU HB3 H N N 306 LEU HG H N N 307 LEU HD11 H N N 308 LEU HD12 H N N 309 LEU HD13 H N N 310 LEU HD21 H N N 311 LEU HD22 H N N 312 LEU HD23 H N N 313 LEU HXT H N N 314 LYS N N N N 315 LYS CA C N S 316 LYS C C N N 317 LYS O O N N 318 LYS CB C N N 319 LYS CG C N N 320 LYS CD C N N 321 LYS CE C N N 322 LYS NZ N N N 323 LYS OXT O N N 324 LYS H H N N 325 LYS H2 H N N 326 LYS HA H N N 327 LYS HB2 H N N 328 LYS HB3 H N N 329 LYS HG2 H N N 330 LYS HG3 H N N 331 LYS HD2 H N N 332 LYS HD3 H N N 333 LYS HE2 H N N 334 LYS HE3 H N N 335 LYS HZ1 H N N 336 LYS HZ2 H N N 337 LYS HZ3 H N N 338 LYS HXT H N N 339 MET N N N N 340 MET CA C N S 341 MET C C N N 342 MET O O N N 343 MET CB C N N 344 MET CG C N N 345 MET SD S N N 346 MET CE C N N 347 MET OXT O N N 348 MET H H N N 349 MET H2 H N N 350 MET HA H N N 351 MET HB2 H N N 352 MET HB3 H N N 353 MET HG2 H N N 354 MET HG3 H N N 355 MET HE1 H N N 356 MET HE2 H N N 357 MET HE3 H N N 358 MET HXT H N N 359 MG MG MG N N 360 NA NA NA N N 361 PHE N N N N 362 PHE CA C N S 363 PHE C C N N 364 PHE O O N N 365 PHE CB C N N 366 PHE CG C Y N 367 PHE CD1 C Y N 368 PHE CD2 C Y N 369 PHE CE1 C Y N 370 PHE CE2 C Y N 371 PHE CZ C Y N 372 PHE OXT O N N 373 PHE H H N N 374 PHE H2 H N N 375 PHE HA H N N 376 PHE HB2 H N N 377 PHE HB3 H N N 378 PHE HD1 H N N 379 PHE HD2 H N N 380 PHE HE1 H N N 381 PHE HE2 H N N 382 PHE HZ H N N 383 PHE HXT H N N 384 PRO N N N N 385 PRO CA C N S 386 PRO C C N N 387 PRO O O N N 388 PRO CB C N N 389 PRO CG C N N 390 PRO CD C N N 391 PRO OXT O N N 392 PRO H H N N 393 PRO HA H N N 394 PRO HB2 H N N 395 PRO HB3 H N N 396 PRO HG2 H N N 397 PRO HG3 H N N 398 PRO HD2 H N N 399 PRO HD3 H N N 400 PRO HXT H N N 401 SER N N N N 402 SER CA C N S 403 SER C C N N 404 SER O O N N 405 SER CB C N N 406 SER OG O N N 407 SER OXT O N N 408 SER H H N N 409 SER H2 H N N 410 SER HA H N N 411 SER HB2 H N N 412 SER HB3 H N N 413 SER HG H N N 414 SER HXT H N N 415 THR N N N N 416 THR CA C N S 417 THR C C N N 418 THR O O N N 419 THR CB C N R 420 THR OG1 O N N 421 THR CG2 C N N 422 THR OXT O N N 423 THR H H N N 424 THR H2 H N N 425 THR HA H N N 426 THR HB H N N 427 THR HG1 H N N 428 THR HG21 H N N 429 THR HG22 H N N 430 THR HG23 H N N 431 THR HXT H N N 432 TRP N N N N 433 TRP CA C N S 434 TRP C C N N 435 TRP O O N N 436 TRP CB C N N 437 TRP CG C Y N 438 TRP CD1 C Y N 439 TRP CD2 C Y N 440 TRP NE1 N Y N 441 TRP CE2 C Y N 442 TRP CE3 C Y N 443 TRP CZ2 C Y N 444 TRP CZ3 C Y N 445 TRP CH2 C Y N 446 TRP OXT O N N 447 TRP H H N N 448 TRP H2 H N N 449 TRP HA H N N 450 TRP HB2 H N N 451 TRP HB3 H N N 452 TRP HD1 H N N 453 TRP HE1 H N N 454 TRP HE3 H N N 455 TRP HZ2 H N N 456 TRP HZ3 H N N 457 TRP HH2 H N N 458 TRP HXT H N N 459 TYR N N N N 460 TYR CA C N S 461 TYR C C N N 462 TYR O O N N 463 TYR CB C N N 464 TYR CG C Y N 465 TYR CD1 C Y N 466 TYR CD2 C Y N 467 TYR CE1 C Y N 468 TYR CE2 C Y N 469 TYR CZ C Y N 470 TYR OH O N N 471 TYR OXT O N N 472 TYR H H N N 473 TYR H2 H N N 474 TYR HA H N N 475 TYR HB2 H N N 476 TYR HB3 H N N 477 TYR HD1 H N N 478 TYR HD2 H N N 479 TYR HE1 H N N 480 TYR HE2 H N N 481 TYR HH H N N 482 TYR HXT H N N 483 U OP3 O N N 484 U P P N N 485 U OP1 O N N 486 U OP2 O N N 487 U "O5'" O N N 488 U "C5'" C N N 489 U "C4'" C N R 490 U "O4'" O N N 491 U "C3'" C N S 492 U "O3'" O N N 493 U "C2'" C N R 494 U "O2'" O N N 495 U "C1'" C N R 496 U N1 N N N 497 U C2 C N N 498 U O2 O N N 499 U N3 N N N 500 U C4 C N N 501 U O4 O N N 502 U C5 C N N 503 U C6 C N N 504 U HOP3 H N N 505 U HOP2 H N N 506 U "H5'" H N N 507 U "H5''" H N N 508 U "H4'" H N N 509 U "H3'" H N N 510 U "HO3'" H N N 511 U "H2'" H N N 512 U "HO2'" H N N 513 U "H1'" H N N 514 U H3 H N N 515 U H5 H N N 516 U H6 H N N 517 VAL N N N N 518 VAL CA C N S 519 VAL C C N N 520 VAL O O N N 521 VAL CB C N N 522 VAL CG1 C N N 523 VAL CG2 C N N 524 VAL OXT O N N 525 VAL H H N N 526 VAL H2 H N N 527 VAL HA H N N 528 VAL HB H N N 529 VAL HG11 H N N 530 VAL HG12 H N N 531 VAL HG13 H N N 532 VAL HG21 H N N 533 VAL HG22 H N N 534 VAL HG23 H N N 535 VAL HXT H N N 536 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 HOH O H1 sing N N 265 HOH O H2 sing N N 266 ILE N CA sing N N 267 ILE N H sing N N 268 ILE N H2 sing N N 269 ILE CA C sing N N 270 ILE CA CB sing N N 271 ILE CA HA sing N N 272 ILE C O doub N N 273 ILE C OXT sing N N 274 ILE CB CG1 sing N N 275 ILE CB CG2 sing N N 276 ILE CB HB sing N N 277 ILE CG1 CD1 sing N N 278 ILE CG1 HG12 sing N N 279 ILE CG1 HG13 sing N N 280 ILE CG2 HG21 sing N N 281 ILE CG2 HG22 sing N N 282 ILE CG2 HG23 sing N N 283 ILE CD1 HD11 sing N N 284 ILE CD1 HD12 sing N N 285 ILE CD1 HD13 sing N N 286 ILE OXT HXT sing N N 287 LEU N CA sing N N 288 LEU N H sing N N 289 LEU N H2 sing N N 290 LEU CA C sing N N 291 LEU CA CB sing N N 292 LEU CA HA sing N N 293 LEU C O doub N N 294 LEU C OXT sing N N 295 LEU CB CG sing N N 296 LEU CB HB2 sing N N 297 LEU CB HB3 sing N N 298 LEU CG CD1 sing N N 299 LEU CG CD2 sing N N 300 LEU CG HG sing N N 301 LEU CD1 HD11 sing N N 302 LEU CD1 HD12 sing N N 303 LEU CD1 HD13 sing N N 304 LEU CD2 HD21 sing N N 305 LEU CD2 HD22 sing N N 306 LEU CD2 HD23 sing N N 307 LEU OXT HXT sing N N 308 LYS N CA sing N N 309 LYS N H sing N N 310 LYS N H2 sing N N 311 LYS CA C sing N N 312 LYS CA CB sing N N 313 LYS CA HA sing N N 314 LYS C O doub N N 315 LYS C OXT sing N N 316 LYS CB CG sing N N 317 LYS CB HB2 sing N N 318 LYS CB HB3 sing N N 319 LYS CG CD sing N N 320 LYS CG HG2 sing N N 321 LYS CG HG3 sing N N 322 LYS CD CE sing N N 323 LYS CD HD2 sing N N 324 LYS CD HD3 sing N N 325 LYS CE NZ sing N N 326 LYS CE HE2 sing N N 327 LYS CE HE3 sing N N 328 LYS NZ HZ1 sing N N 329 LYS NZ HZ2 sing N N 330 LYS NZ HZ3 sing N N 331 LYS OXT HXT sing N N 332 MET N CA sing N N 333 MET N H sing N N 334 MET N H2 sing N N 335 MET CA C sing N N 336 MET CA CB sing N N 337 MET CA HA sing N N 338 MET C O doub N N 339 MET C OXT sing N N 340 MET CB CG sing N N 341 MET CB HB2 sing N N 342 MET CB HB3 sing N N 343 MET CG SD sing N N 344 MET CG HG2 sing N N 345 MET CG HG3 sing N N 346 MET SD CE sing N N 347 MET CE HE1 sing N N 348 MET CE HE2 sing N N 349 MET CE HE3 sing N N 350 MET OXT HXT sing N N 351 PHE N CA sing N N 352 PHE N H sing N N 353 PHE N H2 sing N N 354 PHE CA C sing N N 355 PHE CA CB sing N N 356 PHE CA HA sing N N 357 PHE C O doub N N 358 PHE C OXT sing N N 359 PHE CB CG sing N N 360 PHE CB HB2 sing N N 361 PHE CB HB3 sing N N 362 PHE CG CD1 doub Y N 363 PHE CG CD2 sing Y N 364 PHE CD1 CE1 sing Y N 365 PHE CD1 HD1 sing N N 366 PHE CD2 CE2 doub Y N 367 PHE CD2 HD2 sing N N 368 PHE CE1 CZ doub Y N 369 PHE CE1 HE1 sing N N 370 PHE CE2 CZ sing Y N 371 PHE CE2 HE2 sing N N 372 PHE CZ HZ sing N N 373 PHE OXT HXT sing N N 374 PRO N CA sing N N 375 PRO N CD sing N N 376 PRO N H sing N N 377 PRO CA C sing N N 378 PRO CA CB sing N N 379 PRO CA HA sing N N 380 PRO C O doub N N 381 PRO C OXT sing N N 382 PRO CB CG sing N N 383 PRO CB HB2 sing N N 384 PRO CB HB3 sing N N 385 PRO CG CD sing N N 386 PRO CG HG2 sing N N 387 PRO CG HG3 sing N N 388 PRO CD HD2 sing N N 389 PRO CD HD3 sing N N 390 PRO OXT HXT sing N N 391 SER N CA sing N N 392 SER N H sing N N 393 SER N H2 sing N N 394 SER CA C sing N N 395 SER CA CB sing N N 396 SER CA HA sing N N 397 SER C O doub N N 398 SER C OXT sing N N 399 SER CB OG sing N N 400 SER CB HB2 sing N N 401 SER CB HB3 sing N N 402 SER OG HG sing N N 403 SER OXT HXT sing N N 404 THR N CA sing N N 405 THR N H sing N N 406 THR N H2 sing N N 407 THR CA C sing N N 408 THR CA CB sing N N 409 THR CA HA sing N N 410 THR C O doub N N 411 THR C OXT sing N N 412 THR CB OG1 sing N N 413 THR CB CG2 sing N N 414 THR CB HB sing N N 415 THR OG1 HG1 sing N N 416 THR CG2 HG21 sing N N 417 THR CG2 HG22 sing N N 418 THR CG2 HG23 sing N N 419 THR OXT HXT sing N N 420 TRP N CA sing N N 421 TRP N H sing N N 422 TRP N H2 sing N N 423 TRP CA C sing N N 424 TRP CA CB sing N N 425 TRP CA HA sing N N 426 TRP C O doub N N 427 TRP C OXT sing N N 428 TRP CB CG sing N N 429 TRP CB HB2 sing N N 430 TRP CB HB3 sing N N 431 TRP CG CD1 doub Y N 432 TRP CG CD2 sing Y N 433 TRP CD1 NE1 sing Y N 434 TRP CD1 HD1 sing N N 435 TRP CD2 CE2 doub Y N 436 TRP CD2 CE3 sing Y N 437 TRP NE1 CE2 sing Y N 438 TRP NE1 HE1 sing N N 439 TRP CE2 CZ2 sing Y N 440 TRP CE3 CZ3 doub Y N 441 TRP CE3 HE3 sing N N 442 TRP CZ2 CH2 doub Y N 443 TRP CZ2 HZ2 sing N N 444 TRP CZ3 CH2 sing Y N 445 TRP CZ3 HZ3 sing N N 446 TRP CH2 HH2 sing N N 447 TRP OXT HXT sing N N 448 TYR N CA sing N N 449 TYR N H sing N N 450 TYR N H2 sing N N 451 TYR CA C sing N N 452 TYR CA CB sing N N 453 TYR CA HA sing N N 454 TYR C O doub N N 455 TYR C OXT sing N N 456 TYR CB CG sing N N 457 TYR CB HB2 sing N N 458 TYR CB HB3 sing N N 459 TYR CG CD1 doub Y N 460 TYR CG CD2 sing Y N 461 TYR CD1 CE1 sing Y N 462 TYR CD1 HD1 sing N N 463 TYR CD2 CE2 doub Y N 464 TYR CD2 HD2 sing N N 465 TYR CE1 CZ doub Y N 466 TYR CE1 HE1 sing N N 467 TYR CE2 CZ sing Y N 468 TYR CE2 HE2 sing N N 469 TYR CZ OH sing N N 470 TYR OH HH sing N N 471 TYR OXT HXT sing N N 472 U OP3 P sing N N 473 U OP3 HOP3 sing N N 474 U P OP1 doub N N 475 U P OP2 sing N N 476 U P "O5'" sing N N 477 U OP2 HOP2 sing N N 478 U "O5'" "C5'" sing N N 479 U "C5'" "C4'" sing N N 480 U "C5'" "H5'" sing N N 481 U "C5'" "H5''" sing N N 482 U "C4'" "O4'" sing N N 483 U "C4'" "C3'" sing N N 484 U "C4'" "H4'" sing N N 485 U "O4'" "C1'" sing N N 486 U "C3'" "O3'" sing N N 487 U "C3'" "C2'" sing N N 488 U "C3'" "H3'" sing N N 489 U "O3'" "HO3'" sing N N 490 U "C2'" "O2'" sing N N 491 U "C2'" "C1'" sing N N 492 U "C2'" "H2'" sing N N 493 U "O2'" "HO2'" sing N N 494 U "C1'" N1 sing N N 495 U "C1'" "H1'" sing N N 496 U N1 C2 sing N N 497 U N1 C6 sing N N 498 U C2 O2 doub N N 499 U C2 N3 sing N N 500 U N3 C4 sing N N 501 U N3 H3 sing N N 502 U C4 O4 doub N N 503 U C4 C5 sing N N 504 U C5 C6 doub N N 505 U C5 H5 sing N N 506 U C6 H6 sing N N 507 VAL N CA sing N N 508 VAL N H sing N N 509 VAL N H2 sing N N 510 VAL CA C sing N N 511 VAL CA CB sing N N 512 VAL CA HA sing N N 513 VAL C O doub N N 514 VAL C OXT sing N N 515 VAL CB CG1 sing N N 516 VAL CB CG2 sing N N 517 VAL CB HB sing N N 518 VAL CG1 HG11 sing N N 519 VAL CG1 HG12 sing N N 520 VAL CG1 HG13 sing N N 521 VAL CG2 HG21 sing N N 522 VAL CG2 HG22 sing N N 523 VAL CG2 HG23 sing N N 524 VAL OXT HXT sing N N 525 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4M4O 'double helix' 4M4O 'a-form double helix' 4M4O 'hairpin loop' 4M4O 'bulge loop' 4M4O 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 59 1_555 0.148 -0.013 0.327 -12.280 -15.149 -6.391 1 B_G1:C59_B B 1 ? B 59 ? 19 1 1 B G 2 1_555 B C 58 1_555 -0.162 -0.191 -0.032 -6.380 -9.715 -7.118 2 B_G2:C58_B B 2 ? B 58 ? 19 1 1 B G 3 1_555 B C 57 1_555 -1.202 -0.145 -0.201 -14.480 -14.076 2.879 3 B_G3:C57_B B 3 ? B 57 ? 19 1 1 B U 4 1_555 B A 56 1_555 -0.118 0.000 0.054 -3.377 -14.761 6.027 4 B_U4:A56_B B 4 ? B 56 ? 20 1 1 B U 5 1_555 B A 55 1_555 0.091 -0.186 0.115 1.868 -9.359 2.106 5 B_U5:A55_B B 5 ? B 55 ? 20 1 1 B C 6 1_555 B G 54 1_555 0.183 -0.097 0.246 -2.335 -8.935 1.795 6 B_C6:G54_B B 6 ? B 54 ? 19 1 1 B A 7 1_555 B C 53 1_555 2.336 0.268 0.104 5.273 -1.418 3.286 7 B_A7:C53_B B 7 ? B 53 ? ? ? 1 B U 8 1_555 B A 52 1_555 -0.002 -0.181 -0.203 -0.472 -12.692 2.356 8 B_U8:A52_B B 8 ? B 52 ? 20 1 1 B C 9 1_555 B G 51 1_555 0.457 -0.338 0.245 2.192 -13.965 3.828 9 B_C9:G51_B B 9 ? B 51 ? 19 1 1 B A 10 1_555 B U 50 1_555 -0.053 -0.415 -0.005 -1.301 -17.115 4.844 10 B_A10:U50_B B 10 ? B 50 ? 20 1 1 B G 11 1_555 B U 49 1_555 -2.099 -0.474 0.308 0.334 -15.397 5.061 11 B_G11:U49_B B 11 ? B 49 ? 28 1 1 B G 12 1_555 B C 48 1_555 -0.096 0.040 0.148 -4.197 -17.009 4.596 12 B_G12:C48_B B 12 ? B 48 ? 19 1 1 B G 13 1_555 B A 47 1_555 -0.151 1.206 -0.147 7.327 -16.890 -14.303 13 B_G13:A47_B B 13 ? B 47 ? 8 1 1 B C 14 1_555 B G 46 1_555 -0.032 -0.009 0.419 -3.354 -15.834 5.935 14 B_C14:G46_B B 14 ? B 46 ? 19 1 1 B U 15 1_555 B A 45 1_555 0.120 -0.017 0.473 -5.297 -11.840 9.258 15 B_U15:A45_B B 15 ? B 45 ? 20 1 1 B G 23 1_555 B C 44 1_555 -0.372 0.085 0.342 2.524 -9.597 1.891 16 B_G23:C44_B B 23 ? B 44 ? 19 1 1 B C 24 1_555 B G 43 1_555 0.053 -0.175 0.219 2.028 -12.479 -1.166 17 B_C24:G43_B B 24 ? B 43 ? 19 1 1 B A 25 1_555 B U 42 1_555 0.458 -0.147 -0.100 2.535 -6.961 0.999 18 B_A25:U42_B B 25 ? B 42 ? 20 1 1 B G 26 1_555 B C 41 1_555 -0.247 -0.161 -0.311 -2.232 -9.232 4.579 19 B_G26:C41_B B 26 ? B 41 ? 19 1 1 B G 28 1_555 B C 39 1_555 -0.206 -0.053 -0.907 -22.377 2.966 0.727 20 B_G28:C39_B B 28 ? B 39 ? 19 1 1 B G 36 1_555 B C 32 1_555 -0.346 -0.190 0.236 -0.443 -15.730 -2.480 21 B_G36:C32_B B 36 ? B 32 ? 19 1 1 B U 30 1_555 B A 35 1_555 -0.187 -0.121 -0.043 -16.472 4.723 -5.050 22 B_U30:A35_B B 30 ? B 35 ? 20 1 1 B A 18 1_555 B U 22 1_555 0.107 1.427 -0.136 -4.778 -7.791 172.096 23 B_A18:U22_B B 18 ? B 22 ? 21 2 1 B G 19 1_555 B U 38 1_555 -1.483 -7.055 -0.249 15.233 -4.737 -145.085 24 B_G19:U38_B B 19 ? B 38 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 59 1_555 B G 2 1_555 B C 58 1_555 -0.510 -1.776 3.048 -3.082 7.125 32.777 -4.094 0.437 2.650 12.410 5.368 33.659 1 BB_G1G2:C58C59_BB B 1 ? B 59 ? B 2 ? B 58 ? 1 B G 2 1_555 B C 58 1_555 B G 3 1_555 B C 57 1_555 -0.154 -1.921 3.272 -1.566 8.168 32.396 -4.600 0.026 2.724 14.347 2.751 33.419 2 BB_G2G3:C57C58_BB B 2 ? B 58 ? B 3 ? B 57 ? 1 B G 3 1_555 B C 57 1_555 B U 4 1_555 B A 56 1_555 -0.449 -1.047 3.005 -4.586 5.542 36.281 -2.327 0.150 2.853 8.793 7.277 36.964 3 BB_G3U4:A56C57_BB B 3 ? B 57 ? B 4 ? B 56 ? 1 B U 4 1_555 B A 56 1_555 B U 5 1_555 B A 55 1_555 0.504 -1.346 3.050 -0.577 7.086 30.915 -3.620 -1.016 2.674 13.078 1.064 31.702 4 BB_U4U5:A55A56_BB B 4 ? B 56 ? B 5 ? B 55 ? 1 B U 5 1_555 B A 55 1_555 B C 6 1_555 B G 54 1_555 0.645 -1.921 3.240 2.005 6.729 34.687 -4.096 -0.784 2.860 11.145 -3.321 35.369 5 BB_U5C6:G54A55_BB B 5 ? B 55 ? B 6 ? B 54 ? 1 B C 6 1_555 B G 54 1_555 B A 7 1_555 B C 53 1_555 -1.315 -1.802 3.056 1.318 5.960 30.312 -4.391 2.691 2.605 11.255 -2.488 30.906 6 BB_C6A7:C53G54_BB B 6 ? B 54 ? B 7 ? B 53 ? 1 B A 7 1_555 B C 53 1_555 B U 8 1_555 B A 52 1_555 0.221 -1.352 3.480 6.433 17.320 22.563 -6.274 0.890 1.964 37.254 -13.837 29.086 7 BB_A7U8:A52C53_BB B 7 ? B 53 ? B 8 ? B 52 ? 1 B U 8 1_555 B A 52 1_555 B C 9 1_555 B G 51 1_555 0.738 -1.745 3.158 -1.006 11.482 30.107 -4.928 -1.487 2.328 21.155 1.854 32.191 8 BB_U8C9:G51A52_BB B 8 ? B 52 ? B 9 ? B 51 ? 1 B C 9 1_555 B G 51 1_555 B A 10 1_555 B U 50 1_555 -0.280 -1.508 3.171 2.250 10.705 29.948 -4.489 0.876 2.472 19.899 -4.183 31.840 9 BB_C9A10:U50G51_BB B 9 ? B 51 ? B 10 ? B 50 ? 1 B A 10 1_555 B U 50 1_555 B G 11 1_555 B U 49 1_555 0.556 -1.944 2.956 -3.929 8.871 20.931 -7.264 -2.454 1.854 22.898 10.141 23.048 10 BB_A10G11:U49U50_BB B 10 ? B 50 ? B 11 ? B 49 ? 1 B G 11 1_555 B U 49 1_555 B G 12 1_555 B C 48 1_555 -0.102 -1.084 3.311 0.327 5.045 44.663 -1.872 0.163 3.176 6.613 -0.429 44.933 11 BB_G11G12:C48U49_BB B 11 ? B 49 ? B 12 ? B 48 ? 1 B G 12 1_555 B C 48 1_555 B G 13 1_555 B A 47 1_555 -1.351 -1.664 3.050 2.045 1.555 20.474 -5.253 4.571 2.770 4.353 -5.726 20.632 12 BB_G12G13:A47C48_BB B 12 ? B 48 ? B 13 ? B 47 ? 1 B G 13 1_555 B A 47 1_555 B C 14 1_555 B G 46 1_555 1.188 -1.389 3.343 -4.008 4.898 36.230 -2.854 -2.417 2.992 7.803 6.385 36.761 13 BB_G13C14:G46A47_BB B 13 ? B 47 ? B 14 ? B 46 ? 1 B C 14 1_555 B G 46 1_555 B U 15 1_555 B A 45 1_555 0.652 -1.298 3.133 -0.024 7.684 36.503 -2.966 -1.022 2.812 12.103 0.038 37.276 14 BB_C14U15:A45G46_BB B 14 ? B 46 ? B 15 ? B 45 ? 1 B U 15 1_555 B A 45 1_555 B G 23 1_555 B C 44 1_555 1.775 -2.388 2.939 2.927 4.735 8.364 -20.647 -5.805 1.841 28.657 -17.711 10.045 15 BB_U15G23:C44A45_BB B 15 ? B 45 ? B 23 ? B 44 ? 1 B G 23 1_555 B C 44 1_555 B C 24 1_555 B G 43 1_555 -0.302 -1.561 3.216 0.226 2.445 36.556 -2.808 0.510 3.106 3.892 -0.360 36.636 16 BB_G23C24:G43C44_BB B 23 ? B 44 ? B 24 ? B 43 ? 1 B C 24 1_555 B G 43 1_555 B A 25 1_555 B U 42 1_555 0.274 -1.661 3.173 2.442 7.992 33.106 -3.991 -0.112 2.723 13.754 -4.202 34.116 17 BB_C24A25:U42G43_BB B 24 ? B 43 ? B 25 ? B 42 ? 1 B A 25 1_555 B U 42 1_555 B G 26 1_555 B C 41 1_555 0.855 -2.229 3.449 1.540 3.931 25.062 -6.212 -1.495 3.114 8.977 -3.518 25.410 18 BB_A25G26:C41U42_BB B 25 ? B 42 ? B 26 ? B 41 ? 1 B G 26 1_555 B C 41 1_555 B G 28 1_555 B C 39 1_555 1.234 -1.883 7.086 15.498 17.864 80.044 -2.371 -0.109 6.739 13.622 -11.817 82.898 19 BB_G26G28:C39C41_BB B 26 ? B 41 ? B 28 ? B 39 ? 1 B G 28 1_555 B C 39 1_555 B G 36 1_555 B C 32 1_555 1.186 -5.146 -4.020 -95.827 -120.381 -120.091 1.649 1.346 -5.115 61.518 -48.970 -167.035 20 BB_G28G36:C32C39_BB B 28 ? B 39 ? B 36 ? B 32 ? 1 B G 36 1_555 B C 32 1_555 B U 30 1_555 B A 35 1_555 2.450 -1.858 4.163 126.751 63.985 124.490 -1.395 -0.338 4.328 32.918 -65.209 162.553 21 BB_G36U30:A35C32_BB B 36 ? B 32 ? B 30 ? B 35 ? 1 B A 18 1_555 B U 22 1_555 B G 19 1_555 B U 38 1_555 -0.336 0.837 2.896 -3.769 -1.794 -152.657 -0.425 -0.185 2.896 0.923 -1.939 -152.675 22 BB_A18G19:U38U22_BB B 18 ? B 22 ? B 19 ? B 38 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1JKB _pdbx_initial_refinement_model.details ? #