HEADER TRANSFERASE 07-AUG-13 4M4P TITLE CRYSTAL STRUCTURE OF EPHA4 ECTODOMAIN CAVEAT 4M4P NAG A 601 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-543; COMPND 5 SYNONYM: EPH-LIKE KINASE 8, EK8, HEK8, TYROSINE-PROTEIN KINASE TYRO1, COMPND 6 TYROSINE-PROTEIN KINASE RECEPTOR SEK; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA4, HEK8, SEK, TYRO1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HIGH5; SOURCE 10 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PACGP67 KEYWDS EPH RECEPTOR PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,D.TSVETKOVA-ROBEV,Y.XU,Y.GOLDGUR,Y.-P.CHAN,J.P.HIMANEN, AUTHOR 2 D.B.NIKOLOV REVDAT 3 20-SEP-23 4M4P 1 HETSYN REVDAT 2 29-JUL-20 4M4P 1 CAVEAT COMPND REMARK SEQADV REVDAT 2 2 1 HETNAM LINK SITE ATOM REVDAT 1 30-OCT-13 4M4P 0 JRNL AUTH K.XU,D.TZVETKOVA-ROBEV,Y.XU,Y.GOLDGUR,Y.P.CHAN,J.P.HIMANEN, JRNL AUTH 2 D.B.NIKOLOV JRNL TITL INSIGHTS INTO EPH RECEPTOR TYROSINE KINASE ACTIVATION FROM JRNL TITL 2 CRYSTAL STRUCTURES OF THE EPHA4 ECTODOMAIN AND ITS COMPLEX JRNL TITL 3 WITH EPHRIN-A5. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 14634 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23959867 JRNL DOI 10.1073/PNAS.1311000110 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1795 - 5.0048 0.99 2839 139 0.1773 0.1910 REMARK 3 2 5.0048 - 3.9764 1.00 2836 151 0.1556 0.1756 REMARK 3 3 3.9764 - 3.4749 1.00 2891 143 0.1764 0.2397 REMARK 3 4 3.4749 - 3.1577 1.00 2873 133 0.1989 0.2462 REMARK 3 5 3.1577 - 2.9317 1.00 2855 138 0.1984 0.2087 REMARK 3 6 2.9317 - 2.7590 1.00 2895 140 0.2041 0.2420 REMARK 3 7 2.7590 - 2.6210 1.00 2816 142 0.2010 0.2668 REMARK 3 8 2.6210 - 2.5070 1.00 2898 136 0.2105 0.2980 REMARK 3 9 2.5070 - 2.4105 1.00 2893 142 0.2020 0.2473 REMARK 3 10 2.4105 - 2.3274 1.00 2835 152 0.2127 0.2456 REMARK 3 11 2.3274 - 2.2546 1.00 2872 148 0.2147 0.2899 REMARK 3 12 2.2546 - 2.1902 1.00 2870 138 0.2296 0.2756 REMARK 3 13 2.1902 - 2.1326 1.00 2884 142 0.2306 0.2414 REMARK 3 14 2.1326 - 2.0806 1.00 2826 134 0.2445 0.2771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4155 REMARK 3 ANGLE : 1.355 5641 REMARK 3 CHIRALITY : 0.111 635 REMARK 3 PLANARITY : 0.007 732 REMARK 3 DIHEDRAL : 16.888 1541 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1333 39.1031 -4.0756 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.3358 REMARK 3 T33: 0.4758 T12: -0.0376 REMARK 3 T13: 0.0821 T23: 0.1179 REMARK 3 L TENSOR REMARK 3 L11: 1.9448 L22: 2.4852 REMARK 3 L33: 1.1342 L12: -1.9503 REMARK 3 L13: -1.0997 L23: 1.5229 REMARK 3 S TENSOR REMARK 3 S11: 0.2234 S12: -0.1467 S13: 1.0018 REMARK 3 S21: -0.6548 S22: 0.0231 S23: -1.1005 REMARK 3 S31: -0.7816 S32: 0.3109 S33: 0.1223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1274 31.6006 3.3743 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.3127 REMARK 3 T33: 0.2693 T12: -0.0066 REMARK 3 T13: -0.0266 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 2.4881 L22: 3.4761 REMARK 3 L33: 1.5378 L12: -1.4618 REMARK 3 L13: -0.2327 L23: 0.2663 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: -0.0017 S13: 0.1725 REMARK 3 S21: 0.1503 S22: 0.0175 S23: -0.2528 REMARK 3 S31: -0.0406 S32: 0.1550 S33: 0.0367 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0773 10.2088 -4.2614 REMARK 3 T TENSOR REMARK 3 T11: 0.2846 T22: 0.8937 REMARK 3 T33: 0.7452 T12: 0.0833 REMARK 3 T13: 0.0519 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.0811 L22: 0.7409 REMARK 3 L33: 1.1206 L12: -0.2725 REMARK 3 L13: 0.5171 L23: 0.2610 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: 0.0697 S13: 0.2769 REMARK 3 S21: -0.1254 S22: 0.2177 S23: -0.5861 REMARK 3 S31: 0.0158 S32: 0.8388 S33: 0.1479 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8931 -8.1458 -5.3091 REMARK 3 T TENSOR REMARK 3 T11: 0.4965 T22: 1.1874 REMARK 3 T33: 1.3531 T12: 0.0159 REMARK 3 T13: -0.0949 T23: -0.6652 REMARK 3 L TENSOR REMARK 3 L11: 0.9377 L22: 0.3039 REMARK 3 L33: 0.9336 L12: 0.0435 REMARK 3 L13: -0.4352 L23: -0.3980 REMARK 3 S TENSOR REMARK 3 S11: 0.3153 S12: 1.3824 S13: -0.7429 REMARK 3 S21: -0.1733 S22: 0.0052 S23: 0.3780 REMARK 3 S31: 0.6575 S32: -0.8563 S33: 0.5315 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.9159 7.5305 15.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.4020 REMARK 3 T33: 0.4305 T12: 0.0570 REMARK 3 T13: 0.0176 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.5054 L22: 2.5703 REMARK 3 L33: 3.3513 L12: 0.1733 REMARK 3 L13: 0.0334 L23: 1.7790 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0169 S13: -0.6263 REMARK 3 S21: 0.1680 S22: 0.0528 S23: -0.2018 REMARK 3 S31: 0.3645 S32: 0.1523 S33: -0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE AUTHORS STATE THAT THE CONFORMATION REMARK 3 ISSUE FOR NAG601A AS WELL AS THE HIGH REAL SPACE R-FACTORS FOR REMARK 3 NAG601A AND NAG602A ARE DUE TO THE PARTIAL DISORDER. THE DENSITY REMARK 3 IS OF POOR QUALITY AND THE MODEL PRIMARILY REFLECTS THAT THEY REMARK 3 ARE THERE. REMARK 4 REMARK 4 4M4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FL7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG400, 0.1M MES BUFFER PH 6.0, 3% REMARK 280 DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.03467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.51733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 26 REMARK 465 ALA A 371 REMARK 465 GLY A 372 REMARK 465 ASP A 373 REMARK 465 GLY A 543 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 369 SG CYS A 377 1.57 REMARK 500 N ASP A 61 O HOH A 758 1.95 REMARK 500 ND2 ASN A 340 C2 NAG A 602 1.99 REMARK 500 O HOH A 805 O HOH A 817 1.99 REMARK 500 OE2 GLU A 451 O HOH A 780 2.01 REMARK 500 O ILE A 444 O HOH A 800 2.08 REMARK 500 O HOH A 844 O HOH A 845 2.13 REMARK 500 O HOH A 749 O HOH A 757 2.17 REMARK 500 NH2 ARG A 489 O HOH A 717 2.18 REMARK 500 OG1 THR A 217 O HOH A 798 2.19 REMARK 500 O HOH A 793 O HOH A 816 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 85.65 65.56 REMARK 500 ASN A 64 -63.40 -104.66 REMARK 500 ASN A 74 34.50 -95.95 REMARK 500 GLU A 92 -124.60 52.66 REMARK 500 ASN A 140 -57.71 -130.00 REMARK 500 LYS A 240 -65.56 -99.49 REMARK 500 SER A 270 -127.62 59.54 REMARK 500 GLU A 341 -116.41 51.21 REMARK 500 LYS A 376 -115.28 57.20 REMARK 500 CYS A 377 71.29 60.40 REMARK 500 TYR A 386 -3.73 85.06 REMARK 500 GLN A 389 -62.00 -126.98 REMARK 500 GLN A 390 -14.33 83.85 REMARK 500 SER A 420 -11.83 81.61 REMARK 500 ALA A 445 -14.65 68.50 REMARK 500 ASN A 533 -163.47 -116.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 404 ALA A 405 -149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M4R RELATED DB: PDB DBREF 4M4P A 27 543 UNP P54764 EPHA4_HUMAN 27 543 SEQADV 4M4P ALA A 26 UNP P54764 EXPRESSION TAG SEQRES 1 A 518 ALA PRO ALA ASN GLU VAL THR LEU LEU ASP SER ARG SER SEQRES 2 A 518 VAL GLN GLY GLU LEU GLY TRP ILE ALA SER PRO LEU GLU SEQRES 3 A 518 GLY GLY TRP GLU GLU VAL SER ILE MET ASP GLU LYS ASN SEQRES 4 A 518 THR PRO ILE ARG THR TYR GLN VAL CYS ASN VAL MET GLU SEQRES 5 A 518 PRO SER GLN ASN ASN TRP LEU ARG THR ASP TRP ILE THR SEQRES 6 A 518 ARG GLU GLY ALA GLN ARG VAL TYR ILE GLU ILE LYS PHE SEQRES 7 A 518 THR LEU ARG ASP CYS ASN SER LEU PRO GLY VAL MET GLY SEQRES 8 A 518 THR CYS LYS GLU THR PHE ASN LEU TYR TYR TYR GLU SER SEQRES 9 A 518 ASP ASN ASP LYS GLU ARG PHE ILE ARG GLU ASN GLN PHE SEQRES 10 A 518 VAL LYS ILE ASP THR ILE ALA ALA ASP GLU SER PHE THR SEQRES 11 A 518 GLN VAL ASP ILE GLY ASP ARG ILE MET LYS LEU ASN THR SEQRES 12 A 518 GLU ILE ARG ASP VAL GLY PRO LEU SER LYS LYS GLY PHE SEQRES 13 A 518 TYR LEU ALA PHE GLN ASP VAL GLY ALA CYS ILE ALA LEU SEQRES 14 A 518 VAL SER VAL ARG VAL PHE TYR LYS LYS CYS PRO LEU THR SEQRES 15 A 518 VAL ARG ASN LEU ALA GLN PHE PRO ASP THR ILE THR GLY SEQRES 16 A 518 ALA ASP THR SER SER LEU VAL GLU VAL ARG GLY SER CYS SEQRES 17 A 518 VAL ASN ASN SER GLU GLU LYS ASP VAL PRO LYS MET TYR SEQRES 18 A 518 CYS GLY ALA ASP GLY GLU TRP LEU VAL PRO ILE GLY ASN SEQRES 19 A 518 CYS LEU CYS ASN ALA GLY HIS GLU GLU ARG SER GLY GLU SEQRES 20 A 518 CYS GLN ALA CYS LYS ILE GLY TYR TYR LYS ALA LEU SER SEQRES 21 A 518 THR ASP ALA THR CYS ALA LYS CYS PRO PRO HIS SER TYR SEQRES 22 A 518 SER VAL TRP GLU GLY ALA THR SER CYS THR CYS ASP ARG SEQRES 23 A 518 GLY PHE PHE ARG ALA ASP ASN ASP ALA ALA SER MET PRO SEQRES 24 A 518 CYS THR ARG PRO PRO SER ALA PRO LEU ASN LEU ILE SER SEQRES 25 A 518 ASN VAL ASN GLU THR SER VAL ASN LEU GLU TRP SER SER SEQRES 26 A 518 PRO GLN ASN THR GLY GLY ARG GLN ASP ILE SER TYR ASN SEQRES 27 A 518 VAL VAL CYS LYS LYS CYS GLY ALA GLY ASP PRO SER LYS SEQRES 28 A 518 CYS ARG PRO CYS GLY SER GLY VAL HIS TYR THR PRO GLN SEQRES 29 A 518 GLN ASN GLY LEU LYS THR THR LYS VAL SER ILE THR ASP SEQRES 30 A 518 LEU LEU ALA HIS THR ASN TYR THR PHE GLU ILE TRP ALA SEQRES 31 A 518 VAL ASN GLY VAL SER LYS TYR ASN PRO ASN PRO ASP GLN SEQRES 32 A 518 SER VAL SER VAL THR VAL THR THR ASN GLN ALA ALA PRO SEQRES 33 A 518 SER SER ILE ALA LEU VAL GLN ALA LYS GLU VAL THR ARG SEQRES 34 A 518 TYR SER VAL ALA LEU ALA TRP LEU GLU PRO ASP ARG PRO SEQRES 35 A 518 ASN GLY VAL ILE LEU GLU TYR GLU VAL LYS TYR TYR GLU SEQRES 36 A 518 LYS ASP GLN ASN GLU ARG SER TYR ARG ILE VAL ARG THR SEQRES 37 A 518 ALA ALA ARG ASN THR ASP ILE LYS GLY LEU ASN PRO LEU SEQRES 38 A 518 THR SER TYR VAL PHE HIS VAL ARG ALA ARG THR ALA ALA SEQRES 39 A 518 GLY TYR GLY ASP PHE SER GLU PRO LEU GLU VAL THR THR SEQRES 40 A 518 ASN THR VAL PRO SER ARG ILE ILE GLY ASP GLY MODRES 4M4P ASN A 340 ASN GLYCOSYLATION SITE MODRES 4M4P ASN A 408 ASN GLYCOSYLATION SITE MODRES 4M4P ASN A 235 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 5 HOH *161(H2 O) HELIX 1 1 ASP A 107 LEU A 111 5 5 HELIX 2 2 ASP A 151 THR A 155 5 5 HELIX 3 3 ASN A 425 ASP A 427 5 3 SHEET 1 A 5 GLU A 30 ASP A 35 0 SHEET 2 A 5 ILE A 192 CYS A 204 -1 O VAL A 199 N LEU A 33 SHEET 3 A 5 VAL A 97 LEU A 105 -1 N TYR A 98 O PHE A 200 SHEET 4 A 5 ILE A 163 VAL A 173 -1 O ARG A 171 N ILE A 99 SHEET 5 A 5 GLN A 156 ASP A 158 -1 N ASP A 158 O ILE A 163 SHEET 1 B 4 GLU A 55 MET A 60 0 SHEET 2 B 4 PRO A 66 VAL A 72 -1 O GLN A 71 N GLU A 55 SHEET 3 B 4 ILE A 192 CYS A 204 -1 O LEU A 194 N TYR A 70 SHEET 4 B 4 THR A 217 ILE A 218 -1 O THR A 217 N CYS A 204 SHEET 1 C 4 ILE A 46 SER A 48 0 SHEET 2 C 4 ASN A 82 ARG A 85 -1 O TRP A 83 N SER A 48 SHEET 3 C 4 GLY A 180 ASP A 187 -1 O PHE A 185 N LEU A 84 SHEET 4 C 4 ILE A 89 THR A 90 -1 N ILE A 89 O PHE A 181 SHEET 1 D 5 ILE A 46 SER A 48 0 SHEET 2 D 5 ASN A 82 ARG A 85 -1 O TRP A 83 N SER A 48 SHEET 3 D 5 GLY A 180 ASP A 187 -1 O PHE A 185 N LEU A 84 SHEET 4 D 5 THR A 121 SER A 129 -1 N ASN A 123 O GLN A 186 SHEET 5 D 5 VAL A 143 ALA A 149 -1 O ILE A 145 N LEU A 124 SHEET 1 E 3 THR A 207 ARG A 209 0 SHEET 2 E 3 ALA A 212 PHE A 214 -1 O PHE A 214 N THR A 207 SHEET 3 E 3 SER A 232 CYS A 233 -1 O SER A 232 N GLN A 213 SHEET 1 F 3 LEU A 226 ARG A 230 0 SHEET 2 F 3 SER A 237 GLY A 248 -1 O CYS A 247 N VAL A 227 SHEET 3 F 3 ILE A 257 CYS A 262 -1 O LEU A 261 N GLU A 238 SHEET 1 G 2 HIS A 266 ARG A 269 0 SHEET 2 G 2 GLU A 272 ALA A 275 -1 O GLU A 272 N ARG A 269 SHEET 1 H 2 TYR A 280 TYR A 281 0 SHEET 2 H 2 ALA A 291 LYS A 292 -1 O ALA A 291 N TYR A 281 SHEET 1 I 2 SER A 297 TYR A 298 0 SHEET 2 I 2 THR A 308 CYS A 309 -1 O THR A 308 N TYR A 298 SHEET 1 J 4 LEU A 333 ASN A 340 0 SHEET 2 J 4 SER A 343 SER A 349 -1 O SER A 343 N ASN A 340 SHEET 3 J 4 LYS A 397 THR A 401 -1 O VAL A 398 N LEU A 346 SHEET 4 J 4 HIS A 385 THR A 387 -1 N THR A 387 O SER A 399 SHEET 1 K 3 SER A 361 LYS A 368 0 SHEET 2 K 3 ASN A 408 VAL A 416 -1 O VAL A 416 N SER A 361 SHEET 3 K 3 SER A 429 THR A 435 -1 O VAL A 430 N ILE A 413 SHEET 1 L 3 VAL A 447 VAL A 452 0 SHEET 2 L 3 VAL A 457 TRP A 461 -1 O ALA A 460 N GLN A 448 SHEET 3 L 3 ASN A 497 ILE A 500 -1 O THR A 498 N LEU A 459 SHEET 1 M 4 ARG A 489 THR A 493 0 SHEET 2 M 4 GLU A 473 GLU A 480 -1 N VAL A 476 O VAL A 491 SHEET 3 M 4 SER A 508 THR A 517 -1 O ARG A 514 N GLU A 475 SHEET 4 M 4 GLY A 520 TYR A 521 -1 O GLY A 520 N THR A 517 SHEET 1 N 4 ARG A 489 THR A 493 0 SHEET 2 N 4 GLU A 473 GLU A 480 -1 N VAL A 476 O VAL A 491 SHEET 3 N 4 SER A 508 THR A 517 -1 O ARG A 514 N GLU A 475 SHEET 4 N 4 LEU A 528 THR A 531 -1 O VAL A 530 N TYR A 509 SSBOND 1 CYS A 73 CYS A 191 1555 1555 2.08 SSBOND 2 CYS A 108 CYS A 118 1555 1555 2.06 SSBOND 3 CYS A 204 CYS A 247 1555 1555 2.09 SSBOND 4 CYS A 233 CYS A 260 1555 1555 2.07 SSBOND 5 CYS A 262 CYS A 273 1555 1555 2.05 SSBOND 6 CYS A 276 CYS A 290 1555 1555 2.03 SSBOND 7 CYS A 293 CYS A 307 1555 1555 2.05 SSBOND 8 CYS A 309 CYS A 325 1555 1555 2.03 SSBOND 9 CYS A 366 CYS A 380 1555 1555 2.02 SSBOND 10 CYS A 369 CYS A 377 1555 1555 2.04 LINK ND2 ASN A 235 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 340 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 408 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 LEU A 43 GLY A 44 0 -29.90 CISPEP 2 SER A 48 PRO A 49 0 -6.80 CISPEP 3 LYS A 63 ASN A 64 0 -9.96 CISPEP 4 GLY A 174 PRO A 175 0 -5.36 CISPEP 5 ASN A 235 ASN A 236 0 -7.46 CISPEP 6 GLY A 355 GLY A 356 0 -3.59 CISPEP 7 HIS A 385 TYR A 386 0 7.31 CISPEP 8 THR A 387 PRO A 388 0 -9.89 CRYST1 112.589 112.589 49.552 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008882 0.005128 0.000000 0.00000 SCALE2 0.000000 0.010256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020181 0.00000