HEADER RNA BINDING PROTEIN/INHIBITOR 07-AUG-13 4M4Q TITLE 6-(4-FLUOROPHENYL)-3-HYDROXY-5-[4-(1H-1,2,3,4-TETRAZOL-5-YL)PHENYL] - TITLE 2 1,2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 H1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 20-SEP-23 4M4Q 1 REMARK SEQADV LINK REVDAT 2 11-DEC-13 4M4Q 1 JRNL REVDAT 1 18-SEP-13 4M4Q 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1448) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 14.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 10235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7454 - 3.9688 0.99 2564 136 0.1773 0.1782 REMARK 3 2 3.9688 - 3.1513 1.00 2474 130 0.2047 0.2406 REMARK 3 3 3.1513 - 2.7533 0.99 2443 128 0.2346 0.2709 REMARK 3 4 2.7533 - 2.5017 0.92 2242 118 0.2433 0.2740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1726 REMARK 3 ANGLE : 1.013 2337 REMARK 3 CHIRALITY : 0.044 241 REMARK 3 PLANARITY : 0.004 296 REMARK 3 DIHEDRAL : 15.523 651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7176 17.9522 -18.3883 REMARK 3 T TENSOR REMARK 3 T11: 0.8162 T22: 0.9484 REMARK 3 T33: 0.6791 T12: -0.2788 REMARK 3 T13: 0.0632 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 9.1623 L22: 3.7773 REMARK 3 L33: 5.0242 L12: 5.6507 REMARK 3 L13: -4.2213 L23: -2.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.4351 S12: 0.9184 S13: -0.5991 REMARK 3 S21: -0.3891 S22: 0.3561 S23: -0.8087 REMARK 3 S31: -0.1876 S32: 0.8303 S33: 0.0947 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2196 9.5459 0.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.6309 T22: 0.6607 REMARK 3 T33: 0.6505 T12: -0.1640 REMARK 3 T13: -0.1428 T23: 0.2031 REMARK 3 L TENSOR REMARK 3 L11: 5.5287 L22: 4.9393 REMARK 3 L33: 5.5794 L12: 2.2771 REMARK 3 L13: 0.5656 L23: -0.4751 REMARK 3 S TENSOR REMARK 3 S11: 0.3335 S12: -1.0772 S13: -1.2230 REMARK 3 S21: 0.6953 S22: -0.7117 S23: -0.7147 REMARK 3 S31: 0.2232 S32: 0.6195 S33: 0.5555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7742 18.4733 -3.0313 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.4149 REMARK 3 T33: 0.4154 T12: -0.0399 REMARK 3 T13: 0.0286 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 6.7433 L22: 7.7036 REMARK 3 L33: 8.5335 L12: 1.3642 REMARK 3 L13: 2.6155 L23: 2.5828 REMARK 3 S TENSOR REMARK 3 S11: 0.1475 S12: -0.6532 S13: 0.6173 REMARK 3 S21: 0.4455 S22: -0.4127 S23: 0.6919 REMARK 3 S31: -0.3909 S32: -0.6826 S33: 0.2086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0392 26.0780 -1.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.9021 T22: 0.6615 REMARK 3 T33: 0.6032 T12: -0.3491 REMARK 3 T13: -0.0971 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 7.8872 L22: 3.3381 REMARK 3 L33: 7.8620 L12: 3.2777 REMARK 3 L13: -2.8815 L23: -0.8792 REMARK 3 S TENSOR REMARK 3 S11: 0.3065 S12: -0.7930 S13: 0.3769 REMARK 3 S21: 0.3310 S22: -0.5336 S23: -0.2419 REMARK 3 S31: -1.6793 S32: 1.1584 S33: 0.1981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.11600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: PDB ENTRY 4KIL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 7.3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.30800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.30800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.74600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.41400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.74600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.41400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.30800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.74600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.41400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.30800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.74600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.41400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -51.39 -121.25 REMARK 500 LYS A 139 -117.39 54.62 REMARK 500 THR A 162 -57.15 65.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 68 ASN A 69 -146.16 REMARK 500 GLU A 141 LYS A 142 141.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.7 REMARK 620 3 GLU A 119 OE2 170.4 92.6 REMARK 620 4 ILE A 120 O 85.4 92.8 96.7 REMARK 620 5 21A A 304 O01 86.0 97.6 90.2 167.2 REMARK 620 6 21A A 304 O04 87.2 172.5 83.3 93.9 76.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 91.5 REMARK 620 3 21A A 304 O01 99.8 81.2 REMARK 620 4 HOH A 402 O 106.7 160.8 89.5 REMARK 620 5 HOH A 404 O 101.2 87.4 156.3 94.7 REMARK 620 6 HOH A 405 O 172.7 81.5 80.7 80.5 77.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 21A A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIL RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4M4Q A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4M4Q MET A -36 UNP F0TRT1 INITIATING METHIONINE SEQADV 4M4Q ALA A -35 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -34 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -33 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -32 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -31 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -30 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -29 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q SER A -28 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q ARG A -27 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q ALA A -26 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q TRP A -25 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q ARG A -24 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -23 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q PRO A -22 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLN A -21 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q PHE A -20 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLY A -19 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLY A -18 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -17 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -16 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -15 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -14 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -13 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q HIS A -12 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q ALA A -11 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q LEU A -10 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLU A -9 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q VAL A -8 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q LEU A -7 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q PHE A -6 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLN A -5 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4M4Q VAL A 201 UNP F0TRT1 ILE 201 ENGINEERED MUTATION SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET SO4 A 303 5 HET 21A A 304 26 HET MG A 305 1 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM 21A 6-(4-FLUOROPHENYL)-5-[4-(1H-TETRAZOL-5-YL) HETNAM 2 21A PHENYL]PYRIDINE-2,3-DIOL HETNAM MG MAGNESIUM ION FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 21A C18 H12 F N5 O2 FORMUL 6 MG MG 2+ FORMUL 7 HOH *9(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 ILE A 138 1 13 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.35 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.14 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.13 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.20 LINK O ILE A 120 MN MN A 301 1555 1555 2.08 LINK MN MN A 301 O01 21A A 304 1555 1555 2.21 LINK MN MN A 301 O04 21A A 304 1555 1555 2.24 LINK MN MN A 302 O01 21A A 304 1555 1555 2.21 LINK MN MN A 302 O HOH A 402 1555 1555 2.19 LINK MN MN A 302 O HOH A 404 1555 1555 2.19 LINK MN MN A 302 O HOH A 405 1555 1555 2.19 SITE 1 AC1 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 6 LYS A 134 21A A 304 SITE 1 AC2 6 GLU A 80 ASP A 108 21A A 304 HOH A 402 SITE 2 AC2 6 HOH A 404 HOH A 405 SITE 1 AC3 5 GLU A 31 THR A 32 ASN A 33 GLU A 166 SITE 2 AC3 5 ALA A 169 SITE 1 AC4 17 ALA A 20 TYR A 24 LYS A 34 ALA A 37 SITE 2 AC4 17 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 3 AC4 17 GLU A 119 ILE A 120 ARG A 124 TYR A 130 SITE 4 AC4 17 LYS A 134 MN A 301 MN A 302 HOH A 402 SITE 5 AC4 17 HOH A 405 SITE 1 AC5 1 GLU A 80 CRYST1 87.492 100.828 66.616 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015011 0.00000