HEADER LYASE/LYASE INHIBITOR 07-AUG-13 4M54 TITLE THE STRUCTURE OF THE STAPHYLOFERRIN B PRECURSOR BIOSYNTHETIC ENZYME TITLE 2 SBNB BOUND TO N-(1-AMINO-1-CARBOXYL-2-ETHYL)-GLUTAMIC ACID AND NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ORNITHINE CYCLODEAMINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE, IRON, L-2, 3-DIAMINOPROPIONIC ACID SYNTHESIS, NAD(P) KEYWDS 2 BINDING ROSSMANN FOLD, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.KOBYLARZ,M.E.P.MURPHY REVDAT 3 28-FEB-24 4M54 1 REMARK SEQADV REVDAT 2 15-NOV-17 4M54 1 REMARK REVDAT 1 09-JUL-14 4M54 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,S.J.TAKAYAMA,D.K.RAI,D.E.HEINRICHS, JRNL AUTH 2 M.E.MURPHY JRNL TITL SYNTHESIS OF L-2,3-DIAMINOPROPIONIC ACID, A SIDEROPHORE AND JRNL TITL 2 ANTIBIOTIC PRECURSOR. JRNL REF CHEM.BIOL. V. 21 379 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24485762 JRNL DOI 10.1016/J.CHEMBIOL.2013.12.011 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2-1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7286 - 5.0757 1.00 1378 153 0.2221 0.2443 REMARK 3 2 5.0757 - 4.0319 0.99 1280 143 0.1721 0.1903 REMARK 3 3 4.0319 - 3.5232 0.98 1237 137 0.2159 0.2510 REMARK 3 4 3.5232 - 3.2015 0.98 1221 137 0.2342 0.2641 REMARK 3 5 3.2015 - 2.9722 0.99 1231 135 0.2382 0.2517 REMARK 3 6 2.9722 - 2.7971 0.99 1236 137 0.2457 0.2841 REMARK 3 7 2.7971 - 2.6571 0.99 1206 135 0.2497 0.3657 REMARK 3 8 2.6571 - 2.5415 1.00 1227 137 0.2575 0.3150 REMARK 3 9 2.5415 - 2.4437 1.00 1225 135 0.2613 0.3129 REMARK 3 10 2.4437 - 2.3594 0.99 1209 134 0.2591 0.3046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2555 REMARK 3 ANGLE : 0.703 3467 REMARK 3 CHIRALITY : 0.048 387 REMARK 3 PLANARITY : 0.002 450 REMARK 3 DIHEDRAL : 14.163 945 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9713 28.3087 -11.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3121 REMARK 3 T33: 0.1821 T12: -0.0557 REMARK 3 T13: -0.0433 T23: 0.0646 REMARK 3 L TENSOR REMARK 3 L11: 5.0657 L22: 2.2766 REMARK 3 L33: 1.2730 L12: -0.3666 REMARK 3 L13: -1.4943 L23: 0.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.4890 S13: -0.2015 REMARK 3 S21: 0.0386 S22: -0.0971 S23: -0.2682 REMARK 3 S31: -0.0895 S32: 0.1109 S33: 0.0928 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4999 32.5201 -0.0311 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.1727 REMARK 3 T33: 0.2354 T12: 0.0508 REMARK 3 T13: -0.0142 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 4.1391 L22: 3.8747 REMARK 3 L33: 3.9505 L12: 1.0183 REMARK 3 L13: 0.0755 L23: -1.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: -0.0038 S13: -0.1314 REMARK 3 S21: 0.1314 S22: -0.0840 S23: -0.4847 REMARK 3 S31: 0.0925 S32: 0.2056 S33: 0.1043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0159 17.8467 -6.4553 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.2020 REMARK 3 T33: 0.3049 T12: -0.0368 REMARK 3 T13: 0.0514 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.9427 L22: 3.2031 REMARK 3 L33: 1.2864 L12: -0.3307 REMARK 3 L13: 0.6738 L23: -2.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: 0.3586 S13: -0.4477 REMARK 3 S21: -0.0599 S22: 0.0769 S23: -0.0684 REMARK 3 S31: -0.1835 S32: 0.0723 S33: 0.0881 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2918 20.4062 -0.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2768 REMARK 3 T33: 0.3340 T12: 0.0021 REMARK 3 T13: -0.0281 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 3.6320 L22: 3.8232 REMARK 3 L33: 3.0265 L12: 0.4687 REMARK 3 L13: 0.1999 L23: -1.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.1137 S13: -0.4938 REMARK 3 S21: 0.3630 S22: 0.0566 S23: -0.2928 REMARK 3 S31: 0.0259 S32: 0.1374 S33: -0.0218 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6253 33.1367 -13.6347 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2269 REMARK 3 T33: 0.2257 T12: -0.0428 REMARK 3 T13: -0.0208 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 8.1577 L22: 5.0578 REMARK 3 L33: 4.2275 L12: -0.9722 REMARK 3 L13: 1.8248 L23: -1.9707 REMARK 3 S TENSOR REMARK 3 S11: -0.1783 S12: 0.6759 S13: 0.4816 REMARK 3 S21: 0.1008 S22: 0.0269 S23: 0.1711 REMARK 3 S31: -0.4682 S32: 0.1402 S33: -0.0154 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6822 26.6788 -10.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.3092 T22: 0.2919 REMARK 3 T33: 0.2626 T12: 0.0252 REMARK 3 T13: -0.0707 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 3.5333 L22: 2.4035 REMARK 3 L33: 1.9285 L12: 0.3909 REMARK 3 L13: -1.5701 L23: 0.6272 REMARK 3 S TENSOR REMARK 3 S11: 0.0928 S12: 0.2969 S13: -0.5050 REMARK 3 S21: -0.3493 S22: -0.3230 S23: 0.0804 REMARK 3 S31: 0.1078 S32: -0.2365 S33: 0.1915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 29.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2-1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M MGCL2, 29-33% PEG REMARK 280 400, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.70650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.55800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.55800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.85325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.55800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.55800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.55975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.55800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.55800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.85325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.55800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.55800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.55975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.70650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -63.11600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 63.11600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 51 REMARK 465 PRO A 52 REMARK 465 GLU A 53 REMARK 465 ASN A 54 REMARK 465 GLY A 55 REMARK 465 ARG A 261 REMARK 465 GLU A 262 REMARK 465 LYS A 263 REMARK 465 LYS A 264 REMARK 465 THR A 265 REMARK 465 ILE A 266 REMARK 465 ASN A 267 REMARK 465 GLN A 268 REMARK 465 LEU A 269 REMARK 465 VAL A 270 REMARK 465 LEU A 271 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 LYS A 274 REMARK 465 PHE A 275 REMARK 465 SER A 276 REMARK 465 LYS A 277 REMARK 465 GLU A 278 REMARK 465 ALA A 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 57.21 -95.59 REMARK 500 HIS A 72 44.57 -102.58 REMARK 500 THR A 214 -169.05 -107.27 REMARK 500 ILE A 237 -54.65 66.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AE5 A 403 DBREF 4M54 A 1 336 UNP Q8NYS7 Q8NYS7_STAAW 1 336 SEQADV 4M54 GLY A -2 UNP Q8NYS7 EXPRESSION TAG SEQADV 4M54 SER A -1 UNP Q8NYS7 EXPRESSION TAG SEQADV 4M54 HIS A 0 UNP Q8NYS7 EXPRESSION TAG SEQRES 1 A 339 GLY SER HIS MET ASN ARG GLU MET LEU TYR LEU ASN ARG SEQRES 2 A 339 SER ASP ILE GLU GLN ALA GLY GLY ASN HIS SER GLN VAL SEQRES 3 A 339 TYR VAL ASP ALA LEU THR GLU ALA LEU THR ALA HIS ALA SEQRES 4 A 339 HIS ASN ASP PHE VAL GLN PRO LEU LYS PRO TYR LEU ARG SEQRES 5 A 339 GLN ASP PRO GLU ASN GLY HIS ILE ALA ASP ARG ILE ILE SEQRES 6 A 339 ALA MET PRO SER HIS ILE GLY GLY GLU HIS ALA ILE SER SEQRES 7 A 339 GLY ILE LYS TRP ILE GLY SER LYS HIS ASP ASN PRO SER SEQRES 8 A 339 LYS ARG ASN MET GLU ARG ALA SER GLY VAL ILE ILE LEU SEQRES 9 A 339 ASN ASP PRO GLU THR ASN TYR PRO ILE ALA VAL MET GLU SEQRES 10 A 339 ALA SER LEU ILE SER SER MET ARG THR ALA ALA VAL SER SEQRES 11 A 339 VAL ILE ALA ALA LYS HIS LEU ALA LYS LYS GLY PHE LYS SEQRES 12 A 339 ASP LEU THR ILE ILE GLY CYS GLY LEU ILE GLY ASP LYS SEQRES 13 A 339 GLN LEU GLN SER MET LEU GLU GLN PHE ASP HIS ILE GLU SEQRES 14 A 339 ARG VAL PHE VAL TYR ASP GLN PHE SER GLU ALA CYS ALA SEQRES 15 A 339 ARG PHE VAL ASP ARG TRP GLN GLN GLN ARG PRO GLU ILE SEQRES 16 A 339 ASN PHE ILE ALA THR GLU ASN ALA LYS GLU ALA VAL SER SEQRES 17 A 339 ASN GLY GLU VAL VAL ILE THR CYS THR VAL THR ASP GLN SEQRES 18 A 339 PRO TYR ILE GLU TYR ASP TRP LEU GLN LYS GLY ALA PHE SEQRES 19 A 339 ILE SER ASN ILE SER ILE MET ASP VAL HIS LYS GLU VAL SEQRES 20 A 339 PHE ILE LYS ALA ASP LYS VAL VAL VAL ASP ASP TRP SER SEQRES 21 A 339 GLN CYS ASN ARG GLU LYS LYS THR ILE ASN GLN LEU VAL SEQRES 22 A 339 LEU GLU GLY LYS PHE SER LYS GLU ALA LEU HIS ALA GLU SEQRES 23 A 339 LEU GLY GLN LEU VAL THR GLY ASP ILE PRO GLY ARG GLU SEQRES 24 A 339 ASP ASP ASP GLU ILE ILE LEU LEU ASN PRO MET GLY MET SEQRES 25 A 339 ALA ILE GLU ASP ILE SER SER ALA TYR PHE ILE TYR GLN SEQRES 26 A 339 GLN ALA GLN GLN GLN ASN ILE GLY THR THR LEU ASN LEU SEQRES 27 A 339 TYR HET NAI A 401 44 HET CL A 402 1 HET AE5 A 403 16 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM AE5 N-[(2S)-2-AMINO-2-CARBOXYETHYL]-L-GLUTAMIC ACID HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 CL CL 1- FORMUL 4 AE5 C8 H14 N2 O6 FORMUL 5 HOH *94(H2 O) HELIX 1 1 ASN A 9 ALA A 16 1 8 HELIX 2 2 HIS A 20 HIS A 37 1 18 HELIX 3 3 ASP A 85 ASN A 91 1 7 HELIX 4 4 ALA A 115 ALA A 135 1 21 HELIX 5 5 GLY A 148 PHE A 162 1 15 HELIX 6 6 PHE A 174 ARG A 189 1 16 HELIX 7 7 ASN A 199 SER A 205 1 7 HELIX 8 8 GLU A 222 LEU A 226 5 5 HELIX 9 9 HIS A 241 ALA A 248 1 8 HELIX 10 10 ASP A 255 ASN A 260 1 6 HELIX 11 11 LEU A 284 THR A 289 1 6 HELIX 12 12 MET A 309 GLN A 327 1 19 SHEET 1 A 3 PHE A 40 VAL A 41 0 SHEET 2 A 3 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 A 3 TYR A 47 LEU A 48 -1 N LEU A 48 O ILE A 61 SHEET 1 B 7 PHE A 40 VAL A 41 0 SHEET 2 B 7 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 B 7 ILE A 74 SER A 82 -1 O ILE A 74 N ILE A 68 SHEET 4 B 7 ALA A 95 ASN A 102 -1 O ASN A 102 N SER A 75 SHEET 5 B 7 PRO A 109 GLU A 114 -1 O MET A 113 N ILE A 99 SHEET 6 B 7 GLU A 4 LEU A 8 1 N LEU A 8 O GLU A 114 SHEET 7 B 7 THR A 331 ASN A 334 -1 O LEU A 333 N MET A 5 SHEET 1 C 8 ASN A 193 ALA A 196 0 SHEET 2 C 8 ARG A 167 TYR A 171 1 N VAL A 168 O ILE A 195 SHEET 3 C 8 ASP A 141 ILE A 145 1 N LEU A 142 O PHE A 169 SHEET 4 C 8 VAL A 209 THR A 212 1 O ILE A 211 N THR A 143 SHEET 5 C 8 PHE A 231 SER A 233 1 O PHE A 231 N VAL A 210 SHEET 6 C 8 ILE A 302 ASN A 305 1 O LEU A 304 N ILE A 232 SHEET 7 C 8 LYS A 250 VAL A 253 1 N VAL A 252 O ASN A 305 SHEET 8 C 8 ALA A 282 GLU A 283 1 O ALA A 282 N VAL A 253 SITE 1 AC1 23 HIS A 37 ARG A 94 ARG A 122 THR A 123 SITE 2 AC1 23 GLY A 146 GLY A 148 LEU A 149 ILE A 150 SITE 3 AC1 23 ASP A 172 GLN A 173 CYS A 213 THR A 214 SITE 4 AC1 23 VAL A 215 THR A 216 ILE A 235 PRO A 306 SITE 5 AC1 23 GLY A 308 AE5 A 403 HOH A 503 HOH A 509 SITE 6 AC1 23 HOH A 521 HOH A 578 HOH A 589 SITE 1 AC2 4 GLN A 50 ASP A 59 ARG A 60 ASN A 107 SITE 1 AC3 12 TYR A 47 ARG A 60 MET A 64 LYS A 78 SITE 2 AC3 12 ILE A 80 ARG A 94 ALA A 95 ARG A 122 SITE 3 AC3 12 MET A 307 GLY A 308 NAI A 401 HOH A 526 CRYST1 63.116 63.116 159.413 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015844 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006273 0.00000