HEADER RNA BINDING PROTEIN/INHIBITOR 08-AUG-13 4M5U TITLE 5-(4-FLUOROPHENYL)-3-HYDROXY-6-[4-(1H-1,2,3,4-TETRAZOL-5-YL)PHENYL]-1, TITLE 2 2-DIHYDROPYRIDIN-2-ONE BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN-INHIBITOR, RNA BINDING PROTEIN- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 28-FEB-24 4M5U 1 REMARK SEQADV LINK REVDAT 2 09-APR-14 4M5U 1 JRNL REVDAT 1 25-SEP-13 4M5U 0 JRNL AUTH A.K.PARHI,A.XIANG,J.D.BAUMAN,D.PATEL,R.S.VIJAYAN,K.DAS, JRNL AUTH 2 E.ARNOLD,E.J.LAVOIE JRNL TITL PHENYL SUBSTITUTED 3-HYDROXYPYRIDIN-2(1H)-ONES: INHIBITORS JRNL TITL 2 OF INFLUENZA A ENDONUCLEASE. JRNL REF BIOORG.MED.CHEM. V. 21 6435 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 24055080 JRNL DOI 10.1016/J.BMC.2013.08.053 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 15141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9561 - 4.7355 1.00 2745 153 0.1744 0.1670 REMARK 3 2 4.7355 - 3.7592 1.00 2768 141 0.1503 0.2044 REMARK 3 3 3.7592 - 3.2842 1.00 2752 144 0.1853 0.1785 REMARK 3 4 3.2842 - 2.9840 1.00 2743 148 0.1987 0.2748 REMARK 3 5 2.9840 - 2.7701 1.00 2745 135 0.1891 0.2237 REMARK 3 6 2.7701 - 2.6068 1.00 2773 148 0.1955 0.2283 REMARK 3 7 2.6068 - 2.4763 1.00 2742 145 0.1969 0.2326 REMARK 3 8 2.4763 - 2.3685 0.98 2710 147 0.2231 0.2656 REMARK 3 9 2.3685 - 2.2773 0.94 2609 140 0.2376 0.2675 REMARK 3 10 2.2773 - 2.1987 0.78 2154 115 0.2371 0.2700 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1728 REMARK 3 ANGLE : 1.016 2338 REMARK 3 CHIRALITY : 0.038 241 REMARK 3 PLANARITY : 0.004 296 REMARK 3 DIHEDRAL : 14.814 651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -4:62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0824 15.4642 -10.1732 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.2980 REMARK 3 T33: 0.3678 T12: -0.0905 REMARK 3 T13: -0.0089 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 6.4013 L22: 4.3885 REMARK 3 L33: 4.9907 L12: 2.8921 REMARK 3 L13: -0.8470 L23: -1.2857 REMARK 3 S TENSOR REMARK 3 S11: -0.3580 S12: 0.2965 S13: -0.4786 REMARK 3 S21: -0.2482 S22: 0.1226 S23: -0.3870 REMARK 3 S31: 0.3312 S32: 0.3784 S33: 0.2350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 63:137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7720 14.0085 -2.4602 REMARK 3 T TENSOR REMARK 3 T11: 0.2812 T22: 0.2944 REMARK 3 T33: 0.3623 T12: -0.1084 REMARK 3 T13: -0.0336 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.0238 L22: 4.5282 REMARK 3 L33: 6.0729 L12: 1.3816 REMARK 3 L13: 0.6715 L23: -0.0159 REMARK 3 S TENSOR REMARK 3 S11: 0.3134 S12: -0.4155 S13: -0.0183 REMARK 3 S21: 0.4339 S22: -0.4506 S23: 0.1583 REMARK 3 S31: 0.1747 S32: -0.4537 S33: 0.1079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 138:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4508 22.8516 0.1506 REMARK 3 T TENSOR REMARK 3 T11: 0.3917 T22: 0.2634 REMARK 3 T33: 0.6842 T12: -0.0875 REMARK 3 T13: -0.0975 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 0.1487 L22: 7.7696 REMARK 3 L33: 7.9707 L12: -0.9539 REMARK 3 L13: 0.5645 L23: -0.5622 REMARK 3 S TENSOR REMARK 3 S11: -0.1792 S12: -0.6197 S13: 1.1281 REMARK 3 S21: -0.2873 S22: -0.1015 S23: 1.5850 REMARK 3 S31: -0.1005 S32: -0.7451 S33: 0.2651 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 150:195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9764 25.7057 -2.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.5011 T22: 0.3633 REMARK 3 T33: 0.4362 T12: -0.1838 REMARK 3 T13: -0.0859 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 6.3260 L22: 2.2474 REMARK 3 L33: 5.5851 L12: 2.1444 REMARK 3 L13: -2.1132 L23: -0.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.2362 S13: 0.6420 REMARK 3 S21: -0.1285 S22: -0.1942 S23: 0.1592 REMARK 3 S31: -0.9236 S32: 0.5467 S33: 0.1013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.26650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.18050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.05950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.18050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.05950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.26650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.18050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.05950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.26650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.18050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.05950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 68 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -53.89 -120.09 REMARK 500 PHE A 51 -2.98 78.91 REMARK 500 ASN A 69 118.50 -35.52 REMARK 500 LYS A 139 -115.69 54.16 REMARK 500 THR A 162 -57.26 65.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 141 LYS A 142 144.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 91.3 REMARK 620 3 GLU A 119 OE2 174.3 94.2 REMARK 620 4 ILE A 120 O 89.0 88.7 89.9 REMARK 620 5 20F A 305 O04 86.8 97.9 93.6 172.3 REMARK 620 6 20F A 305 O01 89.2 175.7 85.4 95.6 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 88.3 REMARK 620 3 20F A 305 O04 91.7 80.1 REMARK 620 4 HOH A 422 O 85.3 172.8 96.7 REMARK 620 5 HOH A 430 O 88.4 94.8 174.9 88.4 REMARK 620 6 HOH A 431 O 179.2 90.9 88.0 95.5 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 422 O REMARK 620 2 HOH A 425 O 89.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20F A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIL RELATED DB: PDB REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB DBREF 4M5U A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4M5U MET A -36 UNP F0TRT1 INITIATING METHIONINE SEQADV 4M5U ALA A -35 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -34 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -33 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -32 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -31 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -30 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -29 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U SER A -28 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U ARG A -27 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U ALA A -26 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U TRP A -25 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U ARG A -24 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -23 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U PRO A -22 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLN A -21 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U PHE A -20 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLY A -19 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLY A -18 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -17 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -16 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -15 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -14 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -13 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U HIS A -12 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U ALA A -11 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U LEU A -10 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLU A -9 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U VAL A -8 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U LEU A -7 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U PHE A -6 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLN A -5 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5U VAL A 201 UNP F0TRT1 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET SO4 A 304 5 HET 20F A 305 26 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM 20F 5-(4-FLUOROPHENYL)-3-HYDROXY-6-[4-(1H-TETRAZOL-5-YL) HETNAM 2 20F PHENYL]PYRIDIN-2(1H)-ONE FORMUL 2 MN 3(MN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 20F C18 H12 F N5 O2 FORMUL 7 HOH *72(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 ILE A 138 1 13 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.32 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.19 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.16 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.20 LINK O ILE A 120 MN MN A 301 1555 1555 2.17 LINK MN MN A 301 O04 20F A 305 1555 1555 2.17 LINK MN MN A 301 O01 20F A 305 1555 1555 2.27 LINK MN MN A 302 O04 20F A 305 1555 1555 2.14 LINK MN MN A 302 O HOH A 422 1555 1555 2.21 LINK MN MN A 302 O HOH A 430 1555 1555 2.19 LINK MN MN A 302 O HOH A 431 1555 1555 2.20 LINK MN MN A 303 O HOH A 422 1555 1555 2.23 LINK MN MN A 303 O HOH A 425 1555 1555 2.21 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 20F A 305 SITE 1 AC2 6 GLU A 80 ASP A 108 20F A 305 HOH A 422 SITE 2 AC2 6 HOH A 430 HOH A 431 SITE 1 AC3 3 GLU A 80 HOH A 422 HOH A 425 SITE 1 AC4 6 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC4 6 GLU A 166 ALA A 169 SITE 1 AC5 17 ALA A 20 TYR A 24 LYS A 34 ALA A 37 SITE 2 AC5 17 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 3 AC5 17 GLU A 119 ILE A 120 ARG A 124 LYS A 134 SITE 4 AC5 17 MN A 301 MN A 302 HOH A 417 HOH A 422 SITE 5 AC5 17 HOH A 431 CRYST1 88.361 100.119 66.533 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011317 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015030 0.00000