HEADER RNA BINDING PROTEIN 08-AUG-13 4M5V TITLE INFLUENZA 2009 H1N1 ENDONUCLEASE WITH 100 MILLIMOLAR CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 5 28-FEB-24 4M5V 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4M5V 1 REMARK REVDAT 3 11-DEC-13 4M5V 1 JRNL REVDAT 2 04-DEC-13 4M5V 1 REMARK REVDAT 1 18-SEP-13 4M5V 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1450 - 4.7991 0.97 2554 128 0.2042 0.2756 REMARK 3 2 4.7991 - 3.8101 1.00 2623 142 0.1589 0.1608 REMARK 3 3 3.8101 - 3.3288 1.00 2613 138 0.1620 0.1744 REMARK 3 4 3.3288 - 3.0245 1.00 2606 140 0.1749 0.2196 REMARK 3 5 3.0245 - 2.8078 1.00 2638 134 0.1707 0.1842 REMARK 3 6 2.8078 - 2.6423 1.00 2623 140 0.1776 0.2088 REMARK 3 7 2.6423 - 2.5100 1.00 2628 141 0.1823 0.1944 REMARK 3 8 2.5100 - 2.4007 1.00 2616 140 0.1910 0.2427 REMARK 3 9 2.4007 - 2.3083 1.00 2614 141 0.1992 0.1914 REMARK 3 10 2.3083 - 2.2287 1.00 2593 134 0.1951 0.2211 REMARK 3 11 2.2287 - 2.1590 1.00 2649 139 0.1911 0.2065 REMARK 3 12 2.1590 - 2.0973 1.00 2608 136 0.2032 0.2451 REMARK 3 13 2.0973 - 2.0421 1.00 2610 135 0.2261 0.2397 REMARK 3 14 2.0421 - 1.9923 1.00 2607 138 0.2377 0.2957 REMARK 3 15 1.9923 - 1.9470 1.00 2644 137 0.2548 0.2887 REMARK 3 16 1.9470 - 1.9055 0.99 2602 134 0.2791 0.2960 REMARK 3 17 1.9055 - 1.8674 1.00 2614 138 0.2866 0.3520 REMARK 3 18 1.8674 - 1.8322 1.00 2626 140 0.3065 0.2884 REMARK 3 19 1.8322 - 1.7995 0.97 2516 131 0.3125 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1702 REMARK 3 ANGLE : 1.114 2308 REMARK 3 CHIRALITY : 0.054 241 REMARK 3 PLANARITY : 0.005 292 REMARK 3 DIHEDRAL : 14.327 639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9586 15.7700 -9.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1913 REMARK 3 T33: 0.2221 T12: -0.0791 REMARK 3 T13: -0.0082 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.4730 L22: 1.9091 REMARK 3 L33: 2.5701 L12: 1.6133 REMARK 3 L13: -0.2265 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.2843 S12: 0.3287 S13: -0.4012 REMARK 3 S21: -0.2204 S22: 0.1183 S23: -0.1216 REMARK 3 S31: 0.3417 S32: 0.1790 S33: 0.1296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9027 10.9435 -2.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.1304 REMARK 3 T33: 0.2133 T12: -0.0971 REMARK 3 T13: -0.0678 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.2813 L22: 3.1366 REMARK 3 L33: 3.9640 L12: 0.4418 REMARK 3 L13: -0.0218 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.2836 S12: -0.3276 S13: -0.2802 REMARK 3 S21: 0.2387 S22: -0.3494 S23: 0.0756 REMARK 3 S31: 0.3639 S32: -0.3689 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6394 30.2700 -3.4705 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: 0.3041 REMARK 3 T33: 0.5642 T12: 0.1330 REMARK 3 T13: -0.0199 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 7.4544 L22: 7.7591 REMARK 3 L33: 7.2134 L12: -1.4222 REMARK 3 L13: -2.3790 L23: -2.2251 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: 0.2252 S13: 1.6327 REMARK 3 S21: -0.5554 S22: -0.0218 S23: 0.7262 REMARK 3 S31: -1.9002 S32: -0.5306 S33: -0.0180 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5992 25.2960 -1.3615 REMARK 3 T TENSOR REMARK 3 T11: 0.3135 T22: 0.1611 REMARK 3 T33: 0.2767 T12: -0.1802 REMARK 3 T13: -0.0802 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.9443 L22: 1.4971 REMARK 3 L33: 2.4850 L12: 1.9058 REMARK 3 L13: -1.0318 L23: -0.4885 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.2594 S13: 0.7004 REMARK 3 S21: -0.0281 S22: -0.0567 S23: 0.2565 REMARK 3 S31: -0.7112 S32: 0.2692 S33: -0.1936 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52229 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.91600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.91600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.74750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.63300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.74750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.63300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.91600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.74750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.63300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.91600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.74750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.63300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -51.05 -120.93 REMARK 500 PHE A 51 -4.66 80.15 REMARK 500 THR A 97 -73.22 -56.72 REMARK 500 LYS A 139 -118.25 55.07 REMARK 500 THR A 162 -57.36 65.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 141 LYS A 142 139.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 GLU A 80 OE1 53.1 REMARK 620 3 HOH A 437 O 123.2 73.8 REMARK 620 4 HOH A 441 O 79.8 85.8 77.6 REMARK 620 5 HOH A 479 O 105.9 111.5 111.5 161.9 REMARK 620 6 HOH A 516 O 88.3 141.4 141.5 88.4 74.8 REMARK 620 7 HOH A 595 O 171.4 135.3 63.8 98.0 73.8 83.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 86.5 REMARK 620 3 HOH A 437 O 93.7 169.8 REMARK 620 4 HOH A 448 O 79.3 86.7 83.3 REMARK 620 5 HOH A 452 O 157.5 84.7 91.5 79.5 REMARK 620 6 HOH A 455 O 71.9 115.5 74.1 141.7 130.5 REMARK 620 7 HOH A 495 O 123.2 73.2 114.8 147.7 73.7 70.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIL RELATED DB: PDB REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4M5V A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4M5V MET A -36 UNP F0TRT1 INITIATING METHIONINE SEQADV 4M5V ALA A -35 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -34 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -33 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -32 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -31 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -30 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -29 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V SER A -28 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V ARG A -27 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V ALA A -26 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V TRP A -25 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V ARG A -24 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -23 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V PRO A -22 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLN A -21 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V PHE A -20 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLY A -19 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLY A -18 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -17 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -16 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -15 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -14 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -13 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V HIS A -12 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V ALA A -11 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V LEU A -10 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLU A -9 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V VAL A -8 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V LEU A -7 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V PHE A -6 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLN A -5 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4M5V VAL A 201 UNP F0TRT1 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET SO4 A 301 5 HET SO4 A 302 5 HET CA A 303 1 HET CA A 304 1 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *195(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 THR A 98 1 16 HELIX 5 5 GLU A 126 ILE A 138 1 13 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK OE2 GLU A 80 CA CA A 303 1555 1555 2.35 LINK OE1 GLU A 80 CA CA A 303 1555 1555 2.56 LINK OE1 GLU A 80 CA CA A 304 1555 1555 2.33 LINK OD1 ASP A 108 CA CA A 304 1555 1555 2.32 LINK CA CA A 303 O HOH A 437 1555 1555 3.13 LINK CA CA A 303 O HOH A 441 1555 1555 2.40 LINK CA CA A 303 O HOH A 479 1555 1555 2.39 LINK CA CA A 303 O HOH A 516 1555 1555 2.39 LINK CA CA A 303 O HOH A 595 1555 1555 2.39 LINK CA CA A 304 O HOH A 437 1555 1555 2.39 LINK CA CA A 304 O HOH A 448 1555 1555 2.39 LINK CA CA A 304 O HOH A 452 1555 1555 2.39 LINK CA CA A 304 O HOH A 455 1555 1555 2.40 LINK CA CA A 304 O HOH A 495 1555 1555 2.40 SITE 1 AC1 7 ALA A 183 SER A 186 LEU A 187 TRP A 188 SITE 2 AC1 7 ASP A 189 HOH A 462 HOH A 481 SITE 1 AC2 8 ILE A 30 GLU A 31 THR A 32 ASN A 33 SITE 2 AC2 8 GLU A 165 GLU A 166 ALA A 169 HOH A 412 SITE 1 AC3 5 GLU A 80 HOH A 441 HOH A 479 HOH A 516 SITE 2 AC3 5 HOH A 595 SITE 1 AC4 7 GLU A 80 ASP A 108 HOH A 437 HOH A 448 SITE 2 AC4 7 HOH A 452 HOH A 455 HOH A 495 CRYST1 87.495 101.266 65.832 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015190 0.00000