HEADER VIRAL PROTEIN/IMMUNE SYSTEM 08-AUG-13 4M5Z TITLE CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY 5J8 BOUND TO 2009 TITLE 2 PANDEMIC INFLUENZA HEMAGGLUTININ, HA1 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 63-285; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FAB 5J8 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: FAB 5J8 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 GENE: HA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 12 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 19 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HEMAGGLUTININ, IMMUNOGLOBULIN FOLD, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HONG,P.S.LEE,I.A.WILSON REVDAT 4 09-OCT-24 4M5Z 1 REMARK REVDAT 3 20-SEP-23 4M5Z 1 REMARK REVDAT 2 06-NOV-13 4M5Z 1 JRNL REVDAT 1 25-SEP-13 4M5Z 0 JRNL AUTH M.HONG,P.S.LEE,R.M.HOFFMAN,X.ZHU,J.C.KRAUSE,N.S.LAURSEN, JRNL AUTH 2 S.I.YOON,L.SONG,L.TUSSEY,J.E.CROWE,A.B.WARD,I.A.WILSON JRNL TITL ANTIBODY RECOGNITION OF THE PANDEMIC H1N1 INFLUENZA VIRUS JRNL TITL 2 HEMAGGLUTININ RECEPTOR BINDING SITE. JRNL REF J.VIROL. V. 87 12471 2013 JRNL REFN ISSN 0022-538X JRNL PMID 24027321 JRNL DOI 10.1128/JVI.01388-13 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 32999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4773 - 5.1494 0.99 2868 144 0.1694 0.2046 REMARK 3 2 5.1494 - 4.0879 0.99 2731 149 0.1452 0.1849 REMARK 3 3 4.0879 - 3.5713 1.00 2651 152 0.1802 0.2307 REMARK 3 4 3.5713 - 3.2449 0.99 2663 139 0.2036 0.2618 REMARK 3 5 3.2449 - 3.0124 1.00 2675 141 0.2249 0.3049 REMARK 3 6 3.0124 - 2.8348 1.00 2619 148 0.2329 0.2703 REMARK 3 7 2.8348 - 2.6928 1.00 2635 138 0.2362 0.3146 REMARK 3 8 2.6928 - 2.5756 1.00 2660 132 0.2408 0.3124 REMARK 3 9 2.5756 - 2.4765 1.00 2598 140 0.2443 0.2814 REMARK 3 10 2.4765 - 2.3910 0.99 2588 145 0.2439 0.2979 REMARK 3 11 2.3910 - 2.3162 0.93 2434 130 0.2568 0.3111 REMARK 3 12 2.3162 - 2.2500 0.85 2210 109 0.2823 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5067 REMARK 3 ANGLE : 1.549 6901 REMARK 3 CHIRALITY : 0.093 761 REMARK 3 PLANARITY : 0.010 881 REMARK 3 DIHEDRAL : 14.292 1800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -15.4755 -24.2632 -33.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.7338 T22: 0.7167 REMARK 3 T33: 0.5658 T12: -0.1218 REMARK 3 T13: -0.2331 T23: 0.2649 REMARK 3 L TENSOR REMARK 3 L11: 3.5148 L22: 1.3660 REMARK 3 L33: 3.4400 L12: 0.5267 REMARK 3 L13: 1.4713 L23: 0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.6047 S13: -0.4474 REMARK 3 S21: 0.1873 S22: 0.3821 S23: 0.0993 REMARK 3 S31: 0.3290 S32: -0.8808 S33: -0.3711 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H AND RESID 1:123 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2340 -8.9098 -68.7175 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.8282 REMARK 3 T33: 0.4237 T12: -0.6506 REMARK 3 T13: -0.0739 T23: 0.3349 REMARK 3 L TENSOR REMARK 3 L11: 1.6637 L22: 0.9571 REMARK 3 L33: 1.3943 L12: -0.0890 REMARK 3 L13: 0.1098 L23: 0.1115 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: -0.1967 S13: -0.1133 REMARK 3 S21: 0.1312 S22: 0.0475 S23: 0.2094 REMARK 3 S31: 0.5062 S32: -0.6423 S33: -0.0142 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN H AND RESID 124:209 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8399 -12.8084 -99.7645 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.6964 REMARK 3 T33: 0.3767 T12: -0.1544 REMARK 3 T13: -0.0055 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 1.0222 L22: 3.2931 REMARK 3 L33: 2.3725 L12: -0.8918 REMARK 3 L13: -0.6733 L23: 1.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.3099 S13: -0.1823 REMARK 3 S21: -0.1617 S22: -0.1099 S23: 0.1530 REMARK 3 S31: 0.0170 S32: -0.4265 S33: 0.1591 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN L AND RESID 1:109 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4596 -18.8235 -66.5548 REMARK 3 T TENSOR REMARK 3 T11: 0.6182 T22: 0.7293 REMARK 3 T33: 0.5129 T12: -0.4018 REMARK 3 T13: -0.2412 T23: 0.2181 REMARK 3 L TENSOR REMARK 3 L11: 2.4634 L22: 1.4108 REMARK 3 L33: 2.9944 L12: 0.1479 REMARK 3 L13: -0.9012 L23: 0.5454 REMARK 3 S TENSOR REMARK 3 S11: 0.2803 S12: -0.2900 S13: -0.0907 REMARK 3 S21: 0.4405 S22: -0.0456 S23: -0.4405 REMARK 3 S31: 0.4185 S32: 0.2862 S33: -0.1886 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN L AND RESID 110:209 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0133 -10.7036-105.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.6655 REMARK 3 T33: 0.4271 T12: -0.1475 REMARK 3 T13: 0.0098 T23: 0.1033 REMARK 3 L TENSOR REMARK 3 L11: 3.6639 L22: 3.3208 REMARK 3 L33: 3.2095 L12: -1.3403 REMARK 3 L13: 1.3972 L23: -0.4476 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.3074 S13: -0.0309 REMARK 3 S21: -0.1492 S22: 0.0672 S23: -0.3082 REMARK 3 S31: -0.0816 S32: -0.0704 S33: -0.1584 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081508. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM) WITH REMARK 200 INDIRECTLY CRYO-COOLED FIRST REMARK 200 CRYSTAL AND SAGITTALLY FOCUSING REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33082 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : 0.75500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4M5Y CHAINS H AND L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 23% PEG8000, 0.2 M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 173.09333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 173.09333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.54667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 78 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 PRO A 91 REMARK 465 SER A 92 REMARK 465 ALA A 264 REMARK 465 GLY A 265 REMARK 465 SER A 266 REMARK 465 GLY A 267 REMARK 465 ILE A 268 REMARK 465 ILE A 269 REMARK 465 ILE A 270 REMARK 465 SER A 271 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 CYS H 216 REMARK 465 HIS H 217 REMARK 465 HIS H 218 REMARK 465 HIS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 187 O HOH H 336 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 126 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO H 213 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 76 57.01 -93.97 REMARK 500 ALA A 82 170.66 166.62 REMARK 500 SER A 146 -155.09 -140.28 REMARK 500 ASN A 159 25.03 -152.62 REMARK 500 ASN A 170 97.40 -63.02 REMARK 500 GLN A 196 -48.70 64.31 REMARK 500 ASP A 199 36.19 -99.22 REMARK 500 SER H 15 -4.49 80.88 REMARK 500 SER H 30 69.81 -61.23 REMARK 500 ASP L 51 -45.24 72.61 REMARK 500 ASN L 66 50.35 -156.66 REMARK 500 ALA L 84 172.67 179.63 REMARK 500 ASP L 151 -103.85 53.46 REMARK 500 SER L 168 -21.71 70.46 REMARK 500 ASN L 170 -3.61 77.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN L 69 THR L 70 141.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M4Y RELATED DB: PDB REMARK 900 RELATED ID: 4M5Y RELATED DB: PDB DBREF 4M5Z A 55 271 UNP G8XMJ2 G8XMJ2_9INFA 63 285 DBREF 4M5Z H 1 222 PDB 4M5Z 4M5Z 1 222 DBREF 4M5Z L 1 212 PDB 4M5Z 4M5Z 1 212 SEQRES 1 A 223 GLY VAL ALA PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA SEQRES 2 A 223 GLY TRP ILE LEU GLY ASN PRO GLU CYS GLU SER LEU SER SEQRES 3 A 223 THR ALA SER SER TRP SER TYR ILE VAL GLU THR PRO SER SEQRES 4 A 223 SER ASP ASN GLY THR CYS TYR PRO GLY ASP PHE ILE ASP SEQRES 5 A 223 TYR GLU GLU LEU ARG GLU GLN LEU SER SER VAL SER SER SEQRES 6 A 223 PHE GLU ARG PHE GLU ILE PHE PRO LYS THR SER SER TRP SEQRES 7 A 223 PRO ASN HIS ASP SER ASN LYS GLY VAL THR ALA ALA CYS SEQRES 8 A 223 PRO HIS ALA GLY ALA LYS SER PHE TYR LYS ASN LEU ILE SEQRES 9 A 223 TRP LEU VAL LYS LYS GLY ASN SER TYR PRO LYS LEU SER SEQRES 10 A 223 LYS SER TYR ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL SEQRES 11 A 223 LEU TRP GLY ILE HIS HIS PRO SER THR SER ALA ASP GLN SEQRES 12 A 223 GLN SER LEU TYR GLN ASN ALA ASP ALA TYR VAL PHE VAL SEQRES 13 A 223 GLY SER SER ARG TYR SER LYS LYS PHE LYS PRO GLU ILE SEQRES 14 A 223 ALA ILE ARG PRO LYS VAL ARG ASP GLN GLU GLY ARG MET SEQRES 15 A 223 ASN TYR TYR TRP THR LEU VAL GLU PRO GLY ASP LYS ILE SEQRES 16 A 223 THR PHE GLU ALA THR GLY ASN LEU VAL VAL PRO ARG TYR SEQRES 17 A 223 ALA PHE ALA MET GLU ARG ASN ALA GLY SER GLY ILE ILE SEQRES 18 A 223 ILE SER SEQRES 1 H 233 GLU VAL GLN LEU VAL GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 233 PRO SER ASP ILE LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 233 TYR SER ILE SER SER ASN TYR TYR TRP GLY TRP ILE ARG SEQRES 4 H 233 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 233 TYR HIS SER GLY SER THR TYR TYR LYS PRO SER LEU GLU SEQRES 6 H 233 SER ARG LEU GLY ILE SER VAL ASP THR SER LYS ASN GLN SEQRES 7 H 233 PHE SER LEU LYS LEU SER PHE VAL SER ALA ALA ASP THR SEQRES 8 H 233 ALA VAL TYR TYR CYS ALA ARG HIS VAL ARG SER GLY TYR SEQRES 9 H 233 PRO ASP THR ALA TYR TYR PHE ASP LYS TRP GLY GLN GLY SEQRES 10 H 233 THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 233 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 233 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 233 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 233 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 233 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 233 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 233 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 233 VAL GLU PRO LYS SER CYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 214 SER TYR VAL LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 L 214 PRO GLY GLU THR ALA ARG ILE SER CYS GLY GLY ASN ASN SEQRES 3 L 214 ILE GLY THR LYS VAL LEU HIS TRP TYR GLN GLN THR PRO SEQRES 4 L 214 GLY GLN ALA PRO VAL LEU VAL VAL TYR ASP ASP SER ASP SEQRES 5 L 214 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 214 SER GLY ASN THR ALA THR LEU THR ILE SER ARG VAL GLU SEQRES 7 L 214 VAL GLY ASP GLU ALA ASP TYR TYR CYS GLN VAL TRP ASP SEQRES 8 L 214 ILE SER THR ASP GLN ALA VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER FORMUL 4 HOH *90(H2 O) HELIX 1 1 ASN A 65 GLY A 72 1 8 HELIX 2 2 ASP A 104 SER A 114 1 11 HELIX 3 3 THR A 187 GLN A 196 1 10 HELIX 4 4 PRO H 61 SER H 65 5 5 HELIX 5 5 THR H 73 LYS H 75 5 3 HELIX 6 6 SER H 83 THR H 87 5 5 HELIX 7 7 SER H 156 ALA H 158 5 3 HELIX 8 8 SER H 187 LEU H 189 5 3 HELIX 9 9 LYS H 201 ASN H 204 5 4 HELIX 10 10 ASN L 27 LYS L 31 5 5 HELIX 11 11 GLU L 79 GLU L 83 5 5 HELIX 12 12 SER L 121 ALA L 127 1 7 HELIX 13 13 THR L 181 HIS L 188 1 8 SHEET 1 A 2 LEU A 59 HIS A 60 0 SHEET 2 A 2 ILE A 87 VAL A 88 1 O VAL A 88 N LEU A 59 SHEET 1 B 5 VAL A 115 GLU A 122 0 SHEET 2 B 5 TYR A 256 ARG A 262 -1 O ALA A 259 N GLU A 119 SHEET 3 B 5 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 B 5 LEU A 251 PRO A 254 -1 O VAL A 252 N GLY A 181 SHEET 5 B 5 LEU A 151 TRP A 153 -1 N ILE A 152 O VAL A 253 SHEET 1 C 4 VAL A 115 GLU A 122 0 SHEET 2 C 4 TYR A 256 ARG A 262 -1 O ALA A 259 N GLU A 119 SHEET 3 C 4 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 4 C 4 ARG A 229 VAL A 237 -1 O ARG A 229 N HIS A 184 SHEET 1 D 2 THR A 136 HIS A 141 0 SHEET 2 D 2 ALA A 144 SER A 146 -1 O ALA A 144 N HIS A 141 SHEET 1 E 4 LEU A 164 ILE A 169 0 SHEET 2 E 4 LYS A 242 ALA A 247 -1 O ILE A 243 N TYR A 168 SHEET 3 E 4 VAL A 202 GLY A 205 -1 N PHE A 203 O GLU A 246 SHEET 4 E 4 SER A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 F 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 F 4 LEU H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 ARG H 97 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 TYR H 34 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 H 4 LEU H 11 VAL H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 H 4 ALA H 88 ARG H 97 -1 N TYR H 90 O THR H 107 SHEET 4 H 4 TYR H 100E TRP H 103 -1 O TYR H 100F N VAL H 96 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 I 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 I 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 J 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 J 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 K 3 THR H 151 TRP H 154 0 SHEET 2 K 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 K 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 L 5 SER L 9 VAL L 13 0 SHEET 2 L 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 L 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 L 5 HIS L 34 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 L 5 VAL L 45 VAL L 48 -1 O VAL L 45 N GLN L 37 SHEET 1 M 4 SER L 9 VAL L 13 0 SHEET 2 M 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 M 4 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 M 4 GLN L 95B PHE L 98 -1 O GLN L 95B N ASP L 92 SHEET 1 N 3 ALA L 19 CYS L 23 0 SHEET 2 N 3 ALA L 71 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 3 N 3 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 O 4 SER L 114 PHE L 118 0 SHEET 2 O 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 O 4 TYR L 172 LEU L 180 -1 O LEU L 178 N LEU L 132 SHEET 4 O 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 P 4 SER L 114 PHE L 118 0 SHEET 2 P 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 P 4 TYR L 172 LEU L 180 -1 O LEU L 178 N LEU L 132 SHEET 4 P 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 Q 4 SER L 153 VAL L 155 0 SHEET 2 Q 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 Q 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 Q 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS A 64 CYS A 76 1555 1555 2.05 SSBOND 2 CYS A 97 CYS A 139 1555 1555 2.07 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 6 CYS L 134 CYS L 193 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -6.40 CISPEP 2 GLU H 148 PRO H 149 0 -0.14 CISPEP 3 TYR L 140 PRO L 141 0 0.23 CRYST1 67.549 67.549 259.640 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014804 0.008547 0.000000 0.00000 SCALE2 0.000000 0.017094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003851 0.00000