HEADER IMMUNE SYSTEM 08-AUG-13 4M62 TITLE ONTOGENY OF RECOGNITION SPECIFICITY AND FUNCTIONALITY FOR THE ANTI-HIV TITLE 2 NEUTRALIZING ANTIBODY 4E10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEP2 FV LIGHT CHAIN; COMPND 3 CHAIN: L, M; COMPND 4 FRAGMENT: UNP RESIDUES 21-129; COMPND 5 SYNONYM: IG KAPPA CHAIN V-III REGION HIC; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GEP2 FV HEAVY CHAIN; COMPND 9 CHAIN: H, I; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: T117; COMPND 13 CHAIN: S, T; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GEP, 4E10 GERMLINE, IMMUNOGLOBULIN, ANTIBOODY, HIV, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.A.K.FINTON REVDAT 1 08-OCT-14 4M62 0 JRNL AUTH K.A.FINTON,D.FRIEND,J.JAFFE,M.GEWE,M.A.HOLMES,H.B.LARMAN, JRNL AUTH 2 A.STUART,K.LARIMORE,P.D.GREENBERG,S.J.ELLEDGE,L.STAMATATOS, JRNL AUTH 3 R.K.STRONG JRNL TITL ONTOGENY OF RECOGNITION SPECIFICITY AND FUNCTIONALITY FOR JRNL TITL 2 THE BROADLY NEUTRALIZING ANTI-HIV ANTIBODY 4E10. JRNL REF PLOS PATHOG. V. 10 04403 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 25254371 JRNL DOI 10.1371/JOURNAL.PPAT.1004403 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 68940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3668 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6248 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5760 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8537 ; 0.699 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13261 ; 0.544 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 809 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;35.586 ;24.039 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 965 ;11.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 959 ; 0.051 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7140 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1420 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 68.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AC, PH 5.0, 1.6M LI2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, S, M, I, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 34.94000 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 54.65000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: T REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 51.74000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.65000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, M, I REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, I, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER I 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 60 CG OD1 OD2 REMARK 470 ARG L 77 CD NE CZ NH1 NH2 REMARK 470 ARG L 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 112 CG CD NE CZ NH1 NH2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 23 CG CD CE NZ REMARK 470 SER H 100 OG REMARK 470 ARG M 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN I 1 CG CD OE1 NE2 REMARK 470 GLN I 64 CG CD OE1 NE2 REMARK 470 ARG I 83 CG CD NE CZ NH1 NH2 REMARK 470 SER I 84 OG REMARK 470 ASN S 7 CG OD1 ND2 REMARK 470 GLN S 10 CG CD OE1 NE2 REMARK 470 GLU S 161 CG CD OE1 OE2 REMARK 470 ASN T 7 CG OD1 ND2 REMARK 470 GLN T 10 CG CD OE1 NE2 REMARK 470 GLU T 67 CG CD OE1 OE2 REMARK 470 GLU T 137 CG CD OE1 OE2 REMARK 470 SER T 160 OG REMARK 470 GLU T 161 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -39.95 72.85 REMARK 500 GLN H 43 -168.86 -121.72 REMARK 500 SER H 82B 63.31 39.48 REMARK 500 ALA M 51 -41.78 75.95 REMARK 500 SER S 160 38.60 -87.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 S 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 S 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M8Q RELATED DB: PDB DBREF 4M62 L 1 108 UNP P18136 KV313_HUMAN 21 129 DBREF 4M62 M 1 108 UNP P18136 KV313_HUMAN 21 129 DBREF 4M62 H 1 113 PDB 4M62 4M62 1 113 DBREF 4M62 I 1 113 PDB 4M62 4M62 1 113 DBREF 4M62 S 7 161 PDB 4M62 4M62 7 161 DBREF 4M62 T 7 161 PDB 4M62 4M62 7 161 SEQADV 4M62 SER L 96 UNP P18136 TRP 117 CONFLICT SEQADV 4M62 LEU L 109 UNP P18136 EXPRESSION TAG SEQADV 4M62 VAL L 110 UNP P18136 EXPRESSION TAG SEQADV 4M62 PRO L 111 UNP P18136 EXPRESSION TAG SEQADV 4M62 ARG L 112 UNP P18136 EXPRESSION TAG SEQADV 4M62 SER M 96 UNP P18136 TRP 117 CONFLICT SEQADV 4M62 LEU M 109 UNP P18136 EXPRESSION TAG SEQADV 4M62 VAL M 110 UNP P18136 EXPRESSION TAG SEQADV 4M62 PRO M 111 UNP P18136 EXPRESSION TAG SEQADV 4M62 ARG M 112 UNP P18136 EXPRESSION TAG SEQRES 1 L 113 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 113 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 113 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 113 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 113 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 113 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 113 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 113 TYR GLY SER SER PRO SER THR PHE GLY GLN GLY THR LYS SEQRES 9 L 113 VAL GLU ILE LYS ARG LEU VAL PRO ARG SEQRES 1 H 127 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 127 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 127 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 127 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 127 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 127 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 127 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 127 ALA VAL TYR TYR CYS ALA ARG GLU GLY THR THR GLY SER SEQRES 9 H 127 GLY TRP LEU GLY LYS PRO ILE GLY ALA PHE ALA TYR TRP SEQRES 10 H 127 GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 1 M 113 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 M 113 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 M 113 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 M 113 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 M 113 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 M 113 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 M 113 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 M 113 TYR GLY SER SER PRO SER THR PHE GLY GLN GLY THR LYS SEQRES 9 M 113 VAL GLU ILE LYS ARG LEU VAL PRO ARG SEQRES 1 I 127 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 I 127 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 I 127 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 I 127 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 I 127 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 I 127 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 I 127 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 I 127 ALA VAL TYR TYR CYS ALA ARG GLU GLY THR THR GLY SER SEQRES 9 I 127 GLY TRP LEU GLY LYS PRO ILE GLY ALA PHE ALA TYR TRP SEQRES 10 I 127 GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 1 S 155 ASN ALA MET GLN GLY ILE HIS PHE ARG ARG HIS TYR VAL SEQRES 2 S 155 ARG HIS LEU PRO LYS GLU VAL SER GLN ASN ASP ILE ILE SEQRES 3 S 155 LYS ALA LEU ALA SER PRO LEU ILE ASN ASP GLY MET VAL SEQRES 4 S 155 VAL SER ASP PHE ALA ASP HIS VAL ILE THR ARG GLU GLN SEQRES 5 S 155 ASN PHE PRO THR GLY LEU PRO VAL GLU PRO VAL GLY VAL SEQRES 6 S 155 ALA ILE PRO HIS THR ASP SER LYS TYR VAL ARG GLN ASN SEQRES 7 S 155 ALA ILE SER VAL GLY ILE LEU ALA GLU PRO VAL ASN PHE SEQRES 8 S 155 GLU ASP ALA GLY GLY GLU PRO ASP PRO VAL PRO VAL ARG SEQRES 9 S 155 VAL VAL PHE MET LEU ALA LEU GLY ASN TRP PHE ASP ILE SEQRES 10 S 155 THR ASN VAL LEU TRP TRP ILE MET ASP VAL ILE GLN ASP SEQRES 11 S 155 GLU ASP PHE MET GLN GLN LEU LEU VAL MET ASN ASP ASP SEQRES 12 S 155 GLU ILE TYR GLN SER ILE TYR THR ARG ILE SER GLU SEQRES 1 T 155 ASN ALA MET GLN GLY ILE HIS PHE ARG ARG HIS TYR VAL SEQRES 2 T 155 ARG HIS LEU PRO LYS GLU VAL SER GLN ASN ASP ILE ILE SEQRES 3 T 155 LYS ALA LEU ALA SER PRO LEU ILE ASN ASP GLY MET VAL SEQRES 4 T 155 VAL SER ASP PHE ALA ASP HIS VAL ILE THR ARG GLU GLN SEQRES 5 T 155 ASN PHE PRO THR GLY LEU PRO VAL GLU PRO VAL GLY VAL SEQRES 6 T 155 ALA ILE PRO HIS THR ASP SER LYS TYR VAL ARG GLN ASN SEQRES 7 T 155 ALA ILE SER VAL GLY ILE LEU ALA GLU PRO VAL ASN PHE SEQRES 8 T 155 GLU ASP ALA GLY GLY GLU PRO ASP PRO VAL PRO VAL ARG SEQRES 9 T 155 VAL VAL PHE MET LEU ALA LEU GLY ASN TRP PHE ASP ILE SEQRES 10 T 155 THR ASN VAL LEU TRP TRP ILE MET ASP VAL ILE GLN ASP SEQRES 11 T 155 GLU ASP PHE MET GLN GLN LEU LEU VAL MET ASN ASP ASP SEQRES 12 T 155 GLU ILE TYR GLN SER ILE TYR THR ARG ILE SER GLU HET SO4 L 201 5 HET SO4 L 202 5 HET SO4 M 201 5 HET SO4 S 201 5 HET SO4 S 202 5 HET SO4 T 201 5 HET SO4 T 202 5 HET SO4 T 203 5 HET SO4 T 204 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 9(O4 S 2-) FORMUL 16 HOH *696(H2 O) HELIX 1 1 SER L 29 SER L 31 5 3 HELIX 2 2 GLU L 79 PHE L 83 5 5 HELIX 3 3 PRO H 52A GLY H 55 5 4 HELIX 4 4 LYS H 73 THR H 75 5 3 HELIX 5 5 ARG H 83 THR H 87 5 5 HELIX 6 6 SER M 29 SER M 31 5 3 HELIX 7 7 GLU M 79 PHE M 83 5 5 HELIX 8 8 PRO I 52A GLY I 55 5 4 HELIX 9 9 ARG I 83 THR I 87 5 5 HELIX 10 10 ARG S 15 HIS S 17 5 3 HELIX 11 11 SER S 27 ASP S 42 1 16 HELIX 12 12 ASP S 48 PHE S 60 1 13 HELIX 13 13 ASP S 77 VAL S 81 5 5 HELIX 14 14 ASN S 119 PHE S 121 5 3 HELIX 15 15 ASP S 122 ILE S 134 1 13 HELIX 16 16 ASP S 136 LEU S 144 1 9 HELIX 17 17 ASN S 147 SER S 160 1 14 HELIX 18 18 ARG T 15 HIS T 17 5 3 HELIX 19 19 SER T 27 ASP T 42 1 16 HELIX 20 20 ASP T 48 PHE T 60 1 13 HELIX 21 21 ASP T 77 VAL T 81 5 5 HELIX 22 22 ASN T 119 PHE T 121 5 3 HELIX 23 23 ASP T 122 ILE T 134 1 13 HELIX 24 24 ASP T 136 LEU T 144 1 9 HELIX 25 25 ASN T 147 GLU T 161 1 15 SHEET 1 A 3 LEU L 4 SER L 7 0 SHEET 2 A 3 ALA L 19 VAL L 28 -1 O ARG L 24 N THR L 5 SHEET 3 A 3 PHE L 62 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 1 B 6 THR L 10 LEU L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 C 4 THR L 10 LEU L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 GLN H 3 GLN H 6 0 SHEET 2 D 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 D 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 D 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 E 6 GLU H 10 LYS H 12 0 SHEET 2 E 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 E 6 ALA H 88 THR H 97 -1 N TYR H 90 O THR H 107 SHEET 4 E 6 ILE H 34 GLN H 39 -1 N SER H 35 O ALA H 93 SHEET 5 E 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 E 6 ALA H 57 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 F 4 GLU H 10 LYS H 12 0 SHEET 2 F 4 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 F 4 ALA H 88 THR H 97 -1 N TYR H 90 O THR H 107 SHEET 4 F 4 PRO H 100F TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 G 3 LEU M 4 SER M 7 0 SHEET 2 G 3 ALA M 19 VAL M 28 -1 O ARG M 24 N THR M 5 SHEET 3 G 3 PHE M 62 ILE M 75 -1 O ILE M 75 N ALA M 19 SHEET 1 H 6 THR M 10 LEU M 13 0 SHEET 2 H 6 THR M 102 ILE M 106 1 O LYS M 103 N LEU M 11 SHEET 3 H 6 ALA M 84 GLN M 90 -1 N ALA M 84 O VAL M 104 SHEET 4 H 6 LEU M 33 GLN M 38 -1 N TYR M 36 O TYR M 87 SHEET 5 H 6 ARG M 45 TYR M 49 -1 O ARG M 45 N GLN M 37 SHEET 6 H 6 SER M 53 ARG M 54 -1 O SER M 53 N TYR M 49 SHEET 1 I 4 THR M 10 LEU M 13 0 SHEET 2 I 4 THR M 102 ILE M 106 1 O LYS M 103 N LEU M 11 SHEET 3 I 4 ALA M 84 GLN M 90 -1 N ALA M 84 O VAL M 104 SHEET 4 I 4 THR M 97 PHE M 98 -1 O THR M 97 N GLN M 90 SHEET 1 J 4 GLN I 3 GLN I 6 0 SHEET 2 J 4 VAL I 18 SER I 25 -1 O SER I 25 N GLN I 3 SHEET 3 J 4 THR I 77 LEU I 82 -1 O MET I 80 N VAL I 20 SHEET 4 J 4 VAL I 67 ASP I 72 -1 N THR I 70 O TYR I 79 SHEET 1 K 6 GLU I 10 LYS I 12 0 SHEET 2 K 6 THR I 107 VAL I 111 1 O THR I 110 N LYS I 12 SHEET 3 K 6 ALA I 88 THR I 97 -1 N TYR I 90 O THR I 107 SHEET 4 K 6 ILE I 34 GLN I 39 -1 N VAL I 37 O TYR I 91 SHEET 5 K 6 GLU I 46 ILE I 51 -1 O MET I 48 N TRP I 36 SHEET 6 K 6 ALA I 57 TYR I 59 -1 O ASN I 58 N GLY I 50 SHEET 1 L 4 GLU I 10 LYS I 12 0 SHEET 2 L 4 THR I 107 VAL I 111 1 O THR I 110 N LYS I 12 SHEET 3 L 4 ALA I 88 THR I 97 -1 N TYR I 90 O THR I 107 SHEET 4 L 4 PRO I 100F TRP I 103 -1 O TYR I 102 N ARG I 94 SHEET 1 M 5 VAL S 19 LEU S 22 0 SHEET 2 M 5 ALA S 85 PHE S 97 1 O VAL S 88 N ARG S 20 SHEET 3 M 5 VAL S 107 ALA S 116 -1 O VAL S 107 N PHE S 97 SHEET 4 M 5 GLY S 70 ALA S 72 1 N ALA S 72 O PHE S 113 SHEET 5 M 5 GLY S 63 LEU S 64 -1 N LEU S 64 O VAL S 71 SHEET 1 N 5 VAL T 19 LEU T 22 0 SHEET 2 N 5 ALA T 85 PHE T 97 1 O ILE T 90 N LEU T 22 SHEET 3 N 5 VAL T 107 ALA T 116 -1 O VAL T 107 N PHE T 97 SHEET 4 N 5 GLY T 70 ALA T 72 1 N ALA T 72 O PHE T 113 SHEET 5 N 5 GLY T 63 LEU T 64 -1 N LEU T 64 O VAL T 71 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 3 CYS M 23 CYS M 88 1555 1555 2.04 SSBOND 4 CYS I 22 CYS I 92 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -10.39 CISPEP 2 SER L 94 PRO L 95 0 2.98 CISPEP 3 SER M 7 PRO M 8 0 -9.38 CISPEP 4 SER M 94 PRO M 95 0 0.63 CISPEP 5 GLU S 67 PRO S 68 0 8.24 CISPEP 6 GLU T 67 PRO T 68 0 -0.92 SITE 1 AC1 5 PRO L 59 ASP L 60 ARG L 61 HOH L 391 SITE 2 AC1 5 HOH L 392 SITE 1 AC2 6 ARG L 45 PRO L 59 ARG L 61 HOH L 314 SITE 2 AC2 6 HOH L 316 HOH L 397 SITE 1 AC3 7 ARG M 45 PRO M 59 ARG M 61 PHE M 62 SITE 2 AC3 7 HOH M 302 HOH M 337 HOH M 387 SITE 1 AC4 8 THR I 28 PHE I 29 SER I 30 HOH I 281 SITE 2 AC4 8 ARG S 15 ARG S 16 HIS S 17 HOH S 311 SITE 1 AC5 9 LYS L 107 ARG L 108 LEU L 109 VAL L 110 SITE 2 AC5 9 ARG S 20 SER S 37 HOH S 337 HOH S 352 SITE 3 AC5 9 HOH S 397 SITE 1 AC6 7 THR H 28 PHE H 29 SER H 30 HOH H 300 SITE 2 AC6 7 ARG T 15 ARG T 16 HIS T 17 SITE 1 AC7 10 HOH H 214 ARG M 108 ARG M 112 HIS T 17 SITE 2 AC7 10 PRO T 38 HOH T 303 HOH T 304 HOH T 322 SITE 3 AC7 10 HOH T 342 HOH T 390 SITE 1 AC8 8 ASN S 29 LYS S 33 HOH S 399 LYS T 33 SITE 2 AC8 8 HOH T 336 HOH T 338 HOH T 412 HOH T 419 SITE 1 AC9 1 ARG T 82 CRYST1 69.880 103.480 109.300 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009149 0.00000