HEADER BLOOD CLOTTING/IMMUNE SYSTEM 12-AUG-13 4M7L TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN TISSUE FACTOR TITLE 2 EXTRACELLULAR DOMAIN AND ANTIBODY 10H10 FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TISSUE FACTOR; COMPND 3 CHAIN: T; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 37-245); COMPND 5 SYNONYM: TF, COAGULATION FACTOR III, THROMBOPLASTIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 10H10 LIGHT CHAIN; COMPND 9 CHAIN: L; COMPND 10 FRAGMENT: SEE REMARK 999; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 10H10 HEAVY CHAIN; COMPND 14 CHAIN: H; COMPND 15 FRAGMENT: FD, SEE REMARK 999; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 11 ORGANISM_TAXID: 10090, 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 19 ORGANISM_TAXID: 10090, 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS ANTIBODY, BLOOD CLOTTING-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,G.L.GILLILAND REVDAT 3 20-SEP-23 4M7L 1 REMARK REVDAT 2 25-DEC-19 4M7L 1 SEQADV SEQRES LINK REVDAT 1 13-AUG-14 4M7L 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,G.L.GILLILAND JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN TISSUE FACTOR JRNL TITL 2 EXTRACELLULAR DOMAIN AND ANTIBODY 10H10 FAB FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 9114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.5260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -2.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.744 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.627 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 95.278 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5041 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6866 ; 1.535 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 7.344 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;36.714 ;24.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;19.652 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 777 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3775 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 6 T 107 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1763 14.5227 68.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.4398 T22: 1.3349 REMARK 3 T33: 0.8873 T12: -0.0146 REMARK 3 T13: 0.0152 T23: -0.2202 REMARK 3 L TENSOR REMARK 3 L11: 7.8501 L22: 6.8292 REMARK 3 L33: 5.3242 L12: 3.3229 REMARK 3 L13: 4.2051 L23: 4.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.1364 S13: 0.7182 REMARK 3 S21: -0.0955 S22: 0.1286 S23: -0.8175 REMARK 3 S31: -0.8982 S32: 0.5747 S33: -0.1280 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 108 T 210 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5622 -12.9598 73.9534 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 1.3263 REMARK 3 T33: 1.1002 T12: 0.3352 REMARK 3 T13: -0.3825 T23: -0.1398 REMARK 3 L TENSOR REMARK 3 L11: 2.8896 L22: 14.5244 REMARK 3 L33: 9.0095 L12: 3.3473 REMARK 3 L13: -0.6833 L23: -4.4318 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -1.2208 S13: -1.0194 REMARK 3 S21: 0.7558 S22: -0.5643 S23: -0.3025 REMARK 3 S31: 0.7249 S32: 0.2038 S33: 0.3765 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 113 REMARK 3 RESIDUE RANGE : H 1 H 120 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7581 -0.3346 49.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.8156 REMARK 3 T33: 0.3910 T12: 0.2083 REMARK 3 T13: -0.0340 T23: -0.2321 REMARK 3 L TENSOR REMARK 3 L11: 3.8801 L22: 1.5068 REMARK 3 L33: 3.8222 L12: 0.0356 REMARK 3 L13: -0.4012 L23: -0.6508 REMARK 3 S TENSOR REMARK 3 S11: 0.3526 S12: 0.4244 S13: 0.0489 REMARK 3 S21: 0.0096 S22: 0.1504 S23: -0.1602 REMARK 3 S31: 0.1915 S32: 0.3501 S33: -0.5030 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 114 L 220 REMARK 3 RESIDUE RANGE : H 121 H 223 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5282 14.5071 22.3261 REMARK 3 T TENSOR REMARK 3 T11: 0.5030 T22: 1.1343 REMARK 3 T33: 0.6130 T12: -0.1294 REMARK 3 T13: -0.0530 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 3.9227 L22: 2.3745 REMARK 3 L33: 4.8670 L12: -2.8161 REMARK 3 L13: 0.3657 L23: -0.6548 REMARK 3 S TENSOR REMARK 3 S11: 0.3163 S12: 0.1594 S13: -0.1566 REMARK 3 S21: -0.5951 S22: 0.0931 S23: 0.2848 REMARK 3 S31: -0.0842 S32: 0.2277 S33: -0.4093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9573 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS, PH 10.5, 24% PEG8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 58.43000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.43000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.71500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.14500 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.43000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 58.43000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.14500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 58.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN T 5 REMARK 465 GLY T 81 REMARK 465 ASN T 82 REMARK 465 VAL T 83 REMARK 465 GLU T 84 REMARK 465 SER T 85 REMARK 465 THR T 86 REMARK 465 GLY T 87 REMARK 465 SER T 88 REMARK 465 ALA T 89 REMARK 465 GLY T 90 REMARK 465 GLU T 91 REMARK 465 GLY T 211 REMARK 465 GLN T 212 REMARK 465 GLU T 213 REMARK 465 HIS T 214 REMARK 465 HIS T 215 REMARK 465 HIS T 216 REMARK 465 HIS T 217 REMARK 465 HIS T 218 REMARK 465 HIS T 219 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 219 CG CD OE1 OE2 REMARK 470 LYS H 221 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR T 51 N SER H 135 2555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE T 19 -9.41 83.01 REMARK 500 LYS T 41 -29.74 84.82 REMARK 500 ASP T 66 101.58 -163.58 REMARK 500 ASN T 137 -103.84 48.11 REMARK 500 SER T 160 3.58 -63.13 REMARK 500 SER T 163 75.86 56.16 REMARK 500 THR T 172 -149.56 -103.97 REMARK 500 GLU L 17 -178.34 -66.65 REMARK 500 ASN L 34 27.07 -146.75 REMARK 500 PRO L 50 131.02 -38.69 REMARK 500 ALA L 57 -34.10 70.66 REMARK 500 SER L 58 15.41 -144.61 REMARK 500 SER L 62 137.46 -36.82 REMARK 500 VAL L 64 121.67 -34.83 REMARK 500 THR L 75 28.93 -145.78 REMARK 500 THR L 78 110.79 -164.37 REMARK 500 ASP L 88 -0.32 -58.44 REMARK 500 TYR L 98 -76.40 -123.41 REMARK 500 ASN L 144 92.74 61.57 REMARK 500 LYS L 175 -60.29 -131.30 REMARK 500 GLU L 193 12.08 -67.85 REMARK 500 PRO H 14 77.67 -55.31 REMARK 500 ALA H 16 -165.82 -71.60 REMARK 500 PRO H 41 106.37 -46.78 REMARK 500 LYS H 65 131.78 -31.08 REMARK 500 SER H 76 10.80 -149.23 REMARK 500 ALA H 92 -167.50 -174.37 REMARK 500 SER H 99 -173.02 -63.63 REMARK 500 ASN H 104 39.57 -95.11 REMARK 500 SER H 105 45.74 -87.23 REMARK 500 SER H 137 16.93 -141.42 REMARK 500 PRO H 156 -168.50 -103.19 REMARK 500 PRO H 174 93.94 -53.03 REMARK 500 PRO H 192 133.69 -33.76 REMARK 500 THR H 198 66.75 -113.03 REMARK 500 ASN H 211 61.58 69.38 REMARK 500 PRO H 220 -176.13 -62.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 HEAVY AND LIGHT CHAINS ARE CHIMERIC MOLECULES EACH COMPRISING A REMARK 999 MOUSE VARIABLE DOMAIN AND HUMAN CONSTANT DOMAIN. DBREF 4M7L T 5 213 UNP P13726 TF_HUMAN 37 245 DBREF 4M7L L 1 220 PDB 4M7L 4M7L 1 220 DBREF 4M7L H 1 229 PDB 4M7L 4M7L 1 229 SEQADV 4M7L HIS T 214 UNP P13726 EXPRESSION TAG SEQADV 4M7L HIS T 215 UNP P13726 EXPRESSION TAG SEQADV 4M7L HIS T 216 UNP P13726 EXPRESSION TAG SEQADV 4M7L HIS T 217 UNP P13726 EXPRESSION TAG SEQADV 4M7L HIS T 218 UNP P13726 EXPRESSION TAG SEQADV 4M7L HIS T 219 UNP P13726 EXPRESSION TAG SEQRES 1 T 215 ASN THR VAL ALA ALA TYR ASN LEU THR TRP LYS SER THR SEQRES 2 T 215 ASN PHE LYS THR ILE LEU GLU TRP GLU PRO LYS PRO VAL SEQRES 3 T 215 ASN GLN VAL TYR THR VAL GLN ILE SER THR LYS SER GLY SEQRES 4 T 215 ASP TRP LYS SER LYS CYS PHE TYR THR THR ASP THR GLU SEQRES 5 T 215 CYS ASP LEU THR ASP GLU ILE VAL LYS ASP VAL LYS GLN SEQRES 6 T 215 THR TYR LEU ALA ARG VAL PHE SER TYR PRO ALA GLY ASN SEQRES 7 T 215 VAL GLU SER THR GLY SER ALA GLY GLU PRO LEU TYR GLU SEQRES 8 T 215 ASN SER PRO GLU PHE THR PRO TYR LEU GLU THR ASN LEU SEQRES 9 T 215 GLY GLN PRO THR ILE GLN SER PHE GLU GLN VAL GLY THR SEQRES 10 T 215 LYS VAL ASN VAL THR VAL GLU ASP GLU ARG THR LEU VAL SEQRES 11 T 215 ARG ARG ASN ASN THR PHE LEU SER LEU ARG ASP VAL PHE SEQRES 12 T 215 GLY LYS ASP LEU ILE TYR THR LEU TYR TYR TRP LYS SER SEQRES 13 T 215 SER SER SER GLY LYS LYS THR ALA LYS THR ASN THR ASN SEQRES 14 T 215 GLU PHE LEU ILE ASP VAL ASP LYS GLY GLU ASN TYR CYS SEQRES 15 T 215 PHE SER VAL GLN ALA VAL ILE PRO SER ARG THR VAL ASN SEQRES 16 T 215 ARG LYS SER THR ASP SER PRO VAL GLU CYS MET GLY GLN SEQRES 17 T 215 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO SER SER LEU THR VAL SEQRES 2 L 220 THR ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU SER SER GLY ASN GLN LYS ASN TYR LEU SEQRES 4 L 220 THR TRP TYR GLN GLN ILE PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE ASN SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN ASN ASP TYR THR TYR PRO LEU THR PHE SEQRES 9 L 220 GLY ALA GLY THR LYS LEU GLU LEU LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 229 PCA VAL HIS LEU GLN GLN SER GLY ALA GLU LEU MET LYS SEQRES 2 H 229 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 229 TYR THR PHE ILE THR TYR TRP ILE GLU TRP VAL LYS GLN SEQRES 4 H 229 ARG PRO GLY HIS GLY LEU GLU TRP ILE GLY ASP ILE LEU SEQRES 5 H 229 PRO GLY SER GLY SER THR ASN TYR ASN GLU ASN PHE LYS SEQRES 6 H 229 GLY LYS ALA THR PHE THR ALA ASP SER SER SER ASN THR SEQRES 7 H 229 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG SER GLY TYR TYR GLY ASN SEQRES 9 H 229 SER GLY PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 229 VAL SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 229 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 229 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 229 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 229 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 229 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 229 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 229 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 229 SER CYS HIS HIS HIS HIS HIS HIS MODRES 4M7L PCA H 1 GLN PYROGLUTAMIC ACID HET PCA H 1 8 HETNAM PCA PYROGLUTAMIC ACID FORMUL 3 PCA C5 H7 N O3 HELIX 1 1 LEU T 59 VAL T 64 1 6 HELIX 2 2 THR T 101 THR T 106 1 6 HELIX 3 3 LEU T 143 GLY T 148 1 6 HELIX 4 4 LYS T 149 LEU T 151 5 3 HELIX 5 5 SER L 127 GLY L 134 1 8 HELIX 6 6 LYS L 189 GLU L 193 1 5 HELIX 7 7 SER H 74 SER H 76 5 3 HELIX 8 8 SER H 134 THR H 138 5 5 HELIX 9 9 SER H 194 GLY H 197 5 4 SHEET 1 A 3 TYR T 10 THR T 17 0 SHEET 2 A 3 LYS T 20 GLU T 26 -1 O GLU T 24 N THR T 13 SHEET 3 A 3 GLU T 56 ASP T 58 -1 O CYS T 57 N LEU T 23 SHEET 1 B 4 TRP T 45 THR T 52 0 SHEET 2 B 4 GLN T 32 SER T 39 -1 N ILE T 38 O LYS T 46 SHEET 3 B 4 LEU T 72 PRO T 79 -1 O LEU T 72 N SER T 39 SHEET 4 B 4 TYR T 94 ASN T 96 -1 O GLU T 95 N VAL T 75 SHEET 1 C 3 ILE T 113 VAL T 119 0 SHEET 2 C 3 LYS T 122 VAL T 127 -1 O THR T 126 N SER T 115 SHEET 3 C 3 GLU T 174 ASP T 178 -1 O PHE T 175 N VAL T 125 SHEET 1 D 2 ARG T 131 ARG T 136 0 SHEET 2 D 2 THR T 139 SER T 142 -1 O THR T 139 N ARG T 136 SHEET 1 E 4 LYS T 166 THR T 170 0 SHEET 2 E 4 ILE T 152 TRP T 158 -1 N TYR T 153 O THR T 170 SHEET 3 E 4 CYS T 186 VAL T 192 -1 O CYS T 186 N TRP T 158 SHEET 4 E 4 GLU T 208 CYS T 209 -1 O GLU T 208 N PHE T 187 SHEET 1 F 4 MET L 4 SER L 7 0 SHEET 2 F 4 VAL L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 F 4 PHE L 77 ILE L 81 -1 O ILE L 81 N VAL L 19 SHEET 4 F 4 PHE L 68 THR L 69 -1 N THR L 69 O THR L 80 SHEET 1 G 6 SER L 10 THR L 14 0 SHEET 2 G 6 THR L 108 LYS L 113 1 O LYS L 113 N VAL L 13 SHEET 3 G 6 VAL L 91 ASN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 G 6 LEU L 39 GLN L 44 -1 N TYR L 42 O TYR L 93 SHEET 5 G 6 LYS L 51 TYR L 55 -1 O LYS L 51 N GLN L 43 SHEET 6 G 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 H 4 SER L 120 PHE L 124 0 SHEET 2 H 4 THR L 135 PHE L 145 -1 O LEU L 141 N PHE L 122 SHEET 3 H 4 TYR L 179 SER L 188 -1 O LEU L 185 N VAL L 138 SHEET 4 H 4 SER L 165 VAL L 169 -1 N SER L 168 O SER L 182 SHEET 1 I 4 ALA L 159 GLN L 161 0 SHEET 2 I 4 LYS L 151 VAL L 156 -1 N VAL L 156 O ALA L 159 SHEET 3 I 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 I 4 THR L 212 ASN L 216 -1 O PHE L 215 N TYR L 198 SHEET 1 J 4 HIS H 3 GLN H 6 0 SHEET 2 J 4 LYS H 19 SER H 25 -1 O SER H 25 N HIS H 3 SHEET 3 J 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 J 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 K 6 GLU H 10 MET H 12 0 SHEET 2 K 6 LEU H 115 VAL H 118 1 O THR H 117 N MET H 12 SHEET 3 K 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 116 SHEET 4 K 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 K 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 K 6 THR H 58 TYR H 60 -1 O ASN H 59 N ASP H 50 SHEET 1 L 4 SER H 127 LEU H 131 0 SHEET 2 L 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 L 4 TYR H 183 SER H 186 -1 O LEU H 185 N VAL H 149 SHEET 4 L 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 M 3 SER H 127 LEU H 131 0 SHEET 2 M 3 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 M 3 VAL H 189 PRO H 192 -1 O VAL H 189 N LEU H 145 SHEET 1 N 2 VAL H 205 HIS H 207 0 SHEET 2 N 2 THR H 212 VAL H 214 -1 O VAL H 214 N VAL H 205 SSBOND 1 CYS T 49 CYS T 57 1555 1555 2.05 SSBOND 2 CYS T 186 CYS T 209 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 94 1555 1555 2.07 SSBOND 4 CYS L 140 CYS L 200 1555 1555 2.05 SSBOND 5 CYS L 220 CYS H 223 1555 1555 2.04 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 7 CYS H 147 CYS H 203 1555 1555 2.03 LINK C PCA H 1 N VAL H 2 1555 1555 1.34 CISPEP 1 GLU T 26 PRO T 27 0 -3.16 CISPEP 2 SER L 7 PRO L 8 0 3.31 CISPEP 3 TYR L 100 PRO L 101 0 10.34 CISPEP 4 TYR L 146 PRO L 147 0 3.97 CISPEP 5 PHE H 153 PRO H 154 0 -11.40 CISPEP 6 GLU H 155 PRO H 156 0 -7.84 CRYST1 116.860 116.860 106.860 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009358 0.00000