HEADER TRANSFERASE 12-AUG-13 4M7N OBSLTE 30-JUL-14 4M7N TITLE CRYSTAL STRUCTURE OF A GLY128MET MUTANT OF THE TOXOPLASMA CDPK, TITLE 2 TGME49_101440 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALMODULIN-DOMAIN PROTEIN KINASE, PUTATIVE; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1, TGGT1_059880, TGME49_101440, TGVEG_042030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, CDPKS, KEYWDS 2 TOXOPLASMA, KINASE, PROTIST, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,J.D.ARTZ,M.EL BAKKOURI,M.SCHAPIRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,R.HUI,M.AMANI,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 2 30-JUL-14 4M7N 1 OBSLTE REVDAT 1 28-AUG-13 4M7N 0 JRNL AUTH A.K.WERNIMONT,J.D.ARTZ,M.EL BAKKOURI,M.SCHAPIRA,A.M.EDWARDS, JRNL AUTH 2 C.H.ARROWSMITH,C.BOUNTRA,R.HUI,M.AMANI JRNL TITL CRYSTAL STRUCTURE OF A GLY128MET MUTANT OF THE TOXOPLASMA JRNL TITL 2 CDPK, TGME49_101440 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1613 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2155 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3909 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5296 ; 1.452 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 5.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;35.733 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;14.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;14.654 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 593 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2886 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 508 REMARK 3 RESIDUE RANGE : A 601 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9950 -0.9000 -6.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0794 REMARK 3 T33: 0.0249 T12: 0.0027 REMARK 3 T13: 0.0082 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2923 L22: 1.1482 REMARK 3 L33: 0.6639 L12: -0.3369 REMARK 3 L13: 0.1525 L23: -0.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0118 S13: -0.0014 REMARK 3 S21: 0.0026 S22: 0.0032 S23: -0.0410 REMARK 3 S31: -0.0753 S32: -0.0014 S33: -0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 PDB ENTRY 4M7N HAS BEEN MADE OBSOLETE BECAUSE IT IS IDENTICAL TO REMARK 5 PDB ENTRY 4IEB AND THEREFORE REDUNDANT. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG3350, 0.3 M MGACETATE, 0.1 M REMARK 280 GLYCINE, 5 MM CACL2 2 MM MGCL2, 5 MM AMPPNP, PH 9.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.08700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.08700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LYS A 88 REMARK 465 GLN A 89 REMARK 465 LYS A 90 REMARK 465 LEU A 271 REMARK 465 LYS A 503 REMARK 465 GLU A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 LYS A 93 CD CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 SER A 205 OG REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 SER A 470 OG REMARK 470 ASP A 471 CG OD1 OD2 REMARK 470 LYS A 478 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 279 O HOH A 1007 2.12 REMARK 500 OD2 ASP A 304 O HOH A 741 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 -111.32 -110.42 REMARK 500 ARG A 145 171.62 177.42 REMARK 500 ARG A 173 -1.01 75.27 REMARK 500 ASP A 174 46.06 -144.93 REMARK 500 ASP A 195 81.05 57.22 REMARK 500 CYS A 505 28.21 48.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 368 OD1 REMARK 620 2 HOH A 701 O 174.9 REMARK 620 3 GLN A 374 O 84.8 93.4 REMARK 620 4 ASN A 370 OD1 86.2 93.7 155.7 REMARK 620 5 GLU A 379 OE1 97.9 86.4 79.3 124.3 REMARK 620 6 ASP A 372 OD2 88.4 86.6 79.7 77.6 157.4 REMARK 620 7 GLU A 379 OE2 90.5 94.3 131.0 71.5 53.0 149.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 816 O REMARK 620 2 ASP A 485 OD2 166.4 REMARK 620 3 GLU A 491 O 92.5 90.0 REMARK 620 4 ASP A 489 OD1 81.2 86.4 77.3 REMARK 620 5 GLU A 496 OE1 84.1 109.4 81.3 153.3 REMARK 620 6 ASN A 487 OD1 90.1 82.2 155.2 78.8 123.5 REMARK 620 7 GLU A 496 OE2 98.8 89.7 129.9 152.6 52.0 73.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 415 OD1 REMARK 620 2 GLU A 423 OE2 175.2 REMARK 620 3 TYR A 421 O 82.7 93.6 REMARK 620 4 ASP A 417 OD1 80.4 102.0 154.4 REMARK 620 5 GLU A 426 OE1 103.2 79.1 79.2 123.4 REMARK 620 6 ASN A 419 OD1 84.8 91.8 84.4 75.0 160.6 REMARK 620 7 GLU A 426 OE2 92.1 92.6 126.3 73.6 50.0 148.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 451 OD1 REMARK 620 2 HOH A 702 O 165.4 REMARK 620 3 LYS A 457 O 81.9 93.4 REMARK 620 4 ASP A 453 OD2 83.2 93.5 146.5 REMARK 620 5 GLU A 462 OE1 105.9 87.3 84.4 128.7 REMARK 620 6 SER A 455 OG 87.9 77.6 77.5 72.1 155.5 REMARK 620 7 GLU A 462 OE2 100.6 92.3 136.5 75.9 52.8 145.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: Q9BJF5_TOXGO RELATED DB: TARGETTRACK DBREF 4M7N A 1 507 UNP Q9BJF5 Q9BJF5_TOXGO 1 507 SEQADV 4M7N MET A 128 UNP Q9BJF5 GLY 128 ENGINEERED MUTATION SEQADV 4M7N LEU A 508 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N GLU A 509 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 510 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 511 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 512 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 513 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 514 UNP Q9BJF5 EXPRESSION TAG SEQADV 4M7N HIS A 515 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 515 MET GLY GLN GLN GLU SER THR LEU GLY GLY ALA ALA GLY SEQRES 2 A 515 GLU PRO ARG SER ARG GLY HIS ALA ALA GLY THR SER GLY SEQRES 3 A 515 GLY PRO GLY ASP HIS LEU HIS ALA THR PRO GLY MET PHE SEQRES 4 A 515 VAL GLN HIS SER THR ALA ILE PHE SER ASP ARG TYR LYS SEQRES 5 A 515 GLY GLN ARG VAL LEU GLY LYS GLY SER PHE GLY GLU VAL SEQRES 6 A 515 ILE LEU CYS LYS ASP LYS ILE THR GLY GLN GLU CYS ALA SEQRES 7 A 515 VAL LYS VAL ILE SER LYS ARG GLN VAL LYS GLN LYS THR SEQRES 8 A 515 ASP LYS GLU SER LEU LEU ARG GLU VAL GLN LEU LEU LYS SEQRES 9 A 515 GLN LEU ASP HIS PRO ASN ILE MET LYS LEU TYR GLU PHE SEQRES 10 A 515 PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL MET GLU VAL SEQRES 11 A 515 TYR THR GLY GLY GLU LEU PHE ASP GLU ILE ILE SER ARG SEQRES 12 A 515 LYS ARG PHE SER GLU VAL ASP ALA ALA ARG ILE ILE ARG SEQRES 13 A 515 GLN VAL LEU SER GLY ILE THR TYR MET HIS LYS ASN LYS SEQRES 14 A 515 ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU LEU SEQRES 15 A 515 GLU SER LYS SER LYS ASP ALA ASN ILE ARG ILE ILE ASP SEQRES 16 A 515 PHE GLY LEU SER THR HIS PHE GLU ALA SER LYS LYS MET SEQRES 17 A 515 LYS ASP LYS ILE GLY THR ALA TYR TYR ILE ALA PRO GLU SEQRES 18 A 515 VAL LEU HIS GLY THR TYR ASP GLU LYS CYS ASP VAL TRP SEQRES 19 A 515 SER THR GLY VAL ILE LEU TYR ILE LEU LEU SER GLY CYS SEQRES 20 A 515 PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP ILE LEU LYS SEQRES 21 A 515 LYS VAL GLU LYS GLY LYS TYR THR PHE GLU LEU PRO GLN SEQRES 22 A 515 TRP LYS LYS VAL SER GLU SER ALA LYS ASP LEU ILE ARG SEQRES 23 A 515 LYS MET LEU THR TYR VAL PRO SER MET ARG ILE SER ALA SEQRES 24 A 515 ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN THR TYR THR SEQRES 25 A 515 LYS GLU GLN ILE SER VAL ASP VAL PRO SER LEU ASP ASN SEQRES 26 A 515 ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY THR GLN LYS SEQRES 27 A 515 LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SER LYS LEU SEQRES 28 A 515 THR SER GLN ASP GLU THR LYS GLU LEU THR ALA ILE PHE SEQRES 29 A 515 HIS LYS MET ASP LYS ASN GLY ASP GLY GLN LEU ASP ARG SEQRES 30 A 515 ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU MET ARG MET SEQRES 31 A 515 LYS GLY GLN ASP ALA SER MET LEU ASP ALA SER ALA VAL SEQRES 32 A 515 GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA VAL ASP PHE SEQRES 33 A 515 ASP LYS ASN GLY TYR ILE GLU TYR SER GLU PHE VAL THR SEQRES 34 A 515 VAL ALA MET ASP ARG LYS THR LEU LEU SER ARG GLU ARG SEQRES 35 A 515 LEU GLU ARG ALA PHE ARG MET PHE ASP SER ASP ASN SER SEQRES 36 A 515 GLY LYS ILE SER SER THR GLU LEU ALA THR ILE PHE GLY SEQRES 37 A 515 VAL SER ASP VAL ASP SER GLU THR TRP LYS SER VAL LEU SEQRES 38 A 515 SER GLU VAL ASP LYS ASN ASN ASP GLY GLU VAL ASP PHE SEQRES 39 A 515 ASP GLU PHE GLN GLN MET LEU LEU LYS LEU CYS GLY ASN SEQRES 40 A 515 LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HET ANP A 605 62 HETNAM CA CALCIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 CA 4(CA 2+) FORMUL 6 ANP C10 H17 N6 O12 P3 FORMUL 7 HOH *321(H2 O) HELIX 1 1 THR A 35 VAL A 40 5 6 HELIX 2 2 ILE A 46 ASP A 49 5 4 HELIX 3 3 ASP A 92 GLN A 105 1 14 HELIX 4 4 GLU A 135 ILE A 141 1 7 HELIX 5 5 SER A 147 ASN A 168 1 22 HELIX 6 6 LYS A 176 GLU A 178 5 3 HELIX 7 7 THR A 214 ILE A 218 5 5 HELIX 8 8 ALA A 219 GLY A 225 1 7 HELIX 9 9 GLU A 229 GLY A 246 1 18 HELIX 10 10 ASN A 254 GLY A 265 1 12 HELIX 11 11 GLU A 270 GLU A 270 5 1 HELIX 12 12 PRO A 272 VAL A 277 5 6 HELIX 13 13 SER A 278 LEU A 289 1 12 HELIX 14 14 VAL A 292 ARG A 296 5 5 HELIX 15 15 SER A 298 ASP A 304 1 7 HELIX 16 16 HIS A 305 THR A 310 1 6 HELIX 17 17 ASP A 319 GLN A 332 1 14 HELIX 18 18 GLN A 337 LEU A 351 1 15 HELIX 19 19 GLN A 354 GLU A 356 5 3 HELIX 20 20 THR A 357 ASP A 368 1 12 HELIX 21 21 ASP A 376 GLY A 392 1 17 HELIX 22 22 ASP A 394 LEU A 398 5 5 HELIX 23 23 SER A 401 ASP A 415 1 15 HELIX 24 24 TYR A 424 MET A 432 1 9 HELIX 25 25 ASP A 433 LEU A 438 1 6 HELIX 26 26 SER A 439 ASP A 451 1 13 HELIX 27 27 SER A 459 PHE A 467 1 9 HELIX 28 28 ASP A 473 ASP A 485 1 13 HELIX 29 29 PHE A 494 LEU A 502 1 9 SHEET 1 A 5 TYR A 51 VAL A 56 0 SHEET 2 A 5 VAL A 65 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 79 N ILE A 66 SHEET 4 A 5 TYR A 123 MET A 128 -1 O MET A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N GLU A 116 O VAL A 127 SHEET 1 B 2 ILE A 170 VAL A 171 0 SHEET 2 B 2 THR A 200 HIS A 201 -1 O THR A 200 N VAL A 171 SHEET 1 C 2 LEU A 180 LEU A 182 0 SHEET 2 C 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 D 2 GLN A 374 LEU A 375 0 SHEET 2 D 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 E 2 LYS A 457 ILE A 458 0 SHEET 2 E 2 VAL A 492 ASP A 493 -1 O VAL A 492 N ILE A 458 SSBOND 1 CYS A 247 CYS A 505 1555 2555 2.21 LINK OD1 ASP A 368 CA CA A 602 1555 1555 2.13 LINK CA CA A 604 O HOH A 816 1555 1555 2.16 LINK OD1 ASP A 415 CA CA A 601 1555 1555 2.20 LINK OD2 ASP A 485 CA CA A 604 1555 1555 2.21 LINK OD1 ASP A 451 CA CA A 603 1555 1555 2.22 LINK OE2 GLU A 423 CA CA A 601 1555 1555 2.27 LINK CA CA A 603 O HOH A 702 1555 1555 2.29 LINK CA CA A 602 O HOH A 701 1555 1555 2.31 LINK O TYR A 421 CA CA A 601 1555 1555 2.33 LINK O GLN A 374 CA CA A 602 1555 1555 2.34 LINK O LYS A 457 CA CA A 603 1555 1555 2.36 LINK O GLU A 491 CA CA A 604 1555 1555 2.37 LINK OD1 ASP A 489 CA CA A 604 1555 1555 2.37 LINK OD1 ASN A 370 CA CA A 602 1555 1555 2.37 LINK OD2 ASP A 453 CA CA A 603 1555 1555 2.39 LINK OE1 GLU A 496 CA CA A 604 1555 1555 2.40 LINK OE1 GLU A 462 CA CA A 603 1555 1555 2.41 LINK OE1 GLU A 379 CA CA A 602 1555 1555 2.41 LINK OD1 ASP A 417 CA CA A 601 1555 1555 2.42 LINK OD2 ASP A 372 CA CA A 602 1555 1555 2.43 LINK OE1 GLU A 426 CA CA A 601 1555 1555 2.44 LINK OD1 ASN A 419 CA CA A 601 1555 1555 2.44 LINK OG SER A 455 CA CA A 603 1555 1555 2.46 LINK OD1 ASN A 487 CA CA A 604 1555 1555 2.46 LINK OE2 GLU A 379 CA CA A 602 1555 1555 2.51 LINK OE2 GLU A 462 CA CA A 603 1555 1555 2.52 LINK OE2 GLU A 496 CA CA A 604 1555 1555 2.56 LINK OE2 GLU A 426 CA CA A 601 1555 1555 2.69 SITE 1 AC1 6 ASP A 415 ASP A 417 ASN A 419 TYR A 421 SITE 2 AC1 6 GLU A 423 GLU A 426 SITE 1 AC2 6 ASP A 368 ASN A 370 ASP A 372 GLN A 374 SITE 2 AC2 6 GLU A 379 HOH A 701 SITE 1 AC3 6 ASP A 451 ASP A 453 SER A 455 LYS A 457 SITE 2 AC3 6 GLU A 462 HOH A 702 SITE 1 AC4 6 ASP A 485 ASN A 487 ASP A 489 GLU A 491 SITE 2 AC4 6 GLU A 496 HOH A 816 SITE 1 AC5 16 GLY A 58 LYS A 59 VAL A 65 ALA A 78 SITE 2 AC5 16 LYS A 80 GLU A 129 TYR A 131 GLU A 135 SITE 3 AC5 16 LEU A 181 ASP A 195 HOH A 727 HOH A 752 SITE 4 AC5 16 HOH A 884 HOH A 927 HOH A 938 HOH A 982 CRYST1 50.174 96.684 102.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009769 0.00000