HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-AUG-13 4M7X TITLE STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A TITLE 2 PANTOTHENATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PANTOTHENATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PANK-II, PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: COAW, MW2054; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-TR KEYWDS PANTOTHENATE KINASE, INHIBITOR, ANTIBACTERIAL, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.MOTTAGHI,B.HONG,W.TEMPEL,H.PARK REVDAT 4 20-SEP-23 4M7X 1 REMARK SEQADV LINK REVDAT 3 28-DEC-16 4M7X 1 JRNL REVDAT 2 10-AUG-16 4M7X 1 JRNL REVDAT 1 03-SEP-14 4M7X 0 JRNL AUTH S.J.HUGHES,L.BARNARD,K.MOTTAGHI,W.TEMPEL,T.ANTOSHCHENKO, JRNL AUTH 2 B.S.HONG,A.ALLALI-HASSANI,D.SMIL,M.VEDADI,E.STRAUSS,H.W.PARK JRNL TITL DISCOVERY OF POTENT PANTOTHENAMIDE INHIBITORS OF JRNL TITL 2 STAPHYLOCOCCUS AUREUS PANTOTHENATE KINASE THROUGH A MINIMAL JRNL TITL 3 SAR STUDY: INHIBITION IS DUE TO TRAPPING OF THE PRODUCT. JRNL REF ACS INFECT DIS V. 2 627 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27759386 JRNL DOI 10.1021/ACSINFECDIS.6B00090 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 53298 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.086 REMARK 3 FREE R VALUE TEST SET COUNT : 2711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09500 REMARK 3 B22 (A**2) : -1.06900 REMARK 3 B33 (A**2) : 1.16400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2245 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2138 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3072 ; 1.513 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4901 ; 1.010 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 5.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;39.956 ;24.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;10.516 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;15.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2591 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5320 13.8455 -3.5562 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0277 REMARK 3 T33: 0.0236 T12: 0.0002 REMARK 3 T13: -0.0003 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8446 L22: 1.5198 REMARK 3 L33: 0.5750 L12: -0.3436 REMARK 3 L13: -0.0446 L23: 0.0905 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0333 S13: 0.1227 REMARK 3 S21: -0.0782 S22: -0.0698 S23: 0.0267 REMARK 3 S31: -0.0677 S32: -0.0100 S33: 0.0251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: GEOMETRY RESTRAINTS FOR THE INHIBITOR REMARK 3 WERE CALCULATED BY PRODRG, AND MODIFIED BASED ON DATA IN THE REMARK 3 CAMBRIDGE STRUCTURAL DATABASE. COOT WAS USED FOR MODEL BUILDING. REMARK 3 THE MOLPROBITY SERVER WAS USED FOR MODEL GEOMETRY VALIDATION. REMARK 4 REMARK 4 4M7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 68.265 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : 0.73600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2EWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M INHIBITOR, 0.01 M MAGNESIUM REMARK 280 CHLORIDE, 0.01 M ATP WERE ADDED TO THE PROTEIN SAMPLE. 30% REMARK 280 PEG4000, 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS HYDROCHLORIDE, PH REMARK 280 8.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.26500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.46000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.26500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 30 CD CE NZ REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 LYS A 247 CD CE NZ REMARK 470 GLU A 252 CD OE1 OE2 REMARK 470 HIS A 270 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 158 CG HIS A 158 CD2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 78.51 41.15 REMARK 500 GLN A 21 130.09 -175.52 REMARK 500 GLN A 133 16.67 59.99 REMARK 500 LYS A 161 -112.70 55.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 301 O2B REMARK 620 2 27Q A 315 OAF 96.2 REMARK 620 3 HOH A 401 O 178.5 84.8 REMARK 620 4 HOH A 402 O 88.6 173.0 90.5 REMARK 620 5 HOH A 403 O 91.3 96.1 87.5 88.9 REMARK 620 6 HOH A 404 O 93.3 87.0 87.8 87.6 174.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 27Q A 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M7Y RELATED DB: PDB DBREF 4M7X A 1 267 UNP Q8NVG0 COAW_STAAW 1 267 SEQADV 4M7X HIS A 268 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7X HIS A 269 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7X HIS A 270 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7X HIS A 271 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7X HIS A 272 UNP Q8NVG0 EXPRESSION TAG SEQADV 4M7X HIS A 273 UNP Q8NVG0 EXPRESSION TAG SEQRES 1 A 273 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 A 273 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 A 273 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 A 273 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 A 273 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 A 273 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 A 273 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 A 273 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 A 273 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 A 273 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 A 273 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 A 273 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 A 273 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 A 273 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 A 273 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 A 273 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 A 273 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 A 273 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 A 273 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 A 273 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 A 273 GLY ALA LEU TYR LEU GLU LYS HIS HIS HIS HIS HIS HIS HET ADP A 301 27 HET MG A 302 1 HET UNX A 303 1 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET UNX A 308 1 HET UNX A 309 1 HET UNX A 310 1 HET UNX A 311 1 HET UNX A 312 1 HET UNX A 313 1 HET UNX A 314 1 HET 27Q A 315 32 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM 27Q N-HEPTYL-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4- HETNAM 2 27Q (PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 UNX 12(X) FORMUL 16 27Q C16 H33 N2 O7 P FORMUL 17 HOH *146(H2 O) HELIX 1 1 ASN A 31 GLN A 41 1 11 HELIX 2 2 ASN A 53 ASN A 60 1 8 HELIX 3 3 VAL A 69 GLN A 85 1 17 HELIX 4 4 GLY A 120 GLN A 133 1 14 HELIX 5 5 ASP A 136 GLN A 145 1 10 HELIX 6 6 VAL A 156 LYS A 161 1 6 HELIX 7 7 HIS A 178 HIS A 182 5 5 HELIX 8 8 THR A 188 LYS A 216 1 29 HELIX 9 9 GLY A 224 HIS A 228 5 5 HELIX 10 10 ASN A 230 ARG A 244 1 15 HELIX 11 11 ASN A 253 ALA A 255 5 3 HELIX 12 12 PHE A 256 HIS A 270 1 15 SHEET 1 A 5 ARG A 22 LEU A 28 0 SHEET 2 A 5 LEU A 11 GLU A 17 -1 N ILE A 12 O GLU A 27 SHEET 3 A 5 LYS A 2 ALA A 7 -1 N GLY A 4 O VAL A 15 SHEET 4 A 5 LEU A 47 THR A 50 1 O THR A 50 N ALA A 7 SHEET 5 A 5 ALA A 65 ILE A 67 1 O GLN A 66 N LEU A 49 SHEET 1 B 5 GLN A 111 ILE A 117 0 SHEET 2 B 5 THR A 101 PHE A 106 -1 N LEU A 103 O GLY A 115 SHEET 3 B 5 TYR A 92 VAL A 97 -1 N TYR A 92 O PHE A 106 SHEET 4 B 5 ASN A 219 ILE A 223 1 O VAL A 221 N ILE A 93 SHEET 5 B 5 LYS A 247 TYR A 250 1 O TYR A 249 N TYR A 222 SHEET 1 C 2 LEU A 154 LYS A 155 0 SHEET 2 C 2 THR A 172 ALA A 174 -1 O ALA A 173 N LEU A 154 LINK O2B ADP A 301 MG MG A 302 1555 1555 2.06 LINK MG MG A 302 OAF 27Q A 315 1555 1555 1.94 LINK MG MG A 302 O HOH A 401 1555 1555 2.09 LINK MG MG A 302 O HOH A 402 1555 1555 2.01 LINK MG MG A 302 O HOH A 403 1555 1555 2.14 LINK MG MG A 302 O HOH A 404 1555 1555 2.16 SITE 1 AC1 24 GLY A 8 GLY A 9 THR A 10 LEU A 11 SITE 2 AC1 24 LYS A 13 LEU A 28 GLY A 98 THR A 99 SITE 3 AC1 24 GLY A 121 GLY A 122 GLN A 125 TYR A 137 SITE 4 AC1 24 GLY A 224 SER A 225 SER A 226 HIS A 228 SITE 5 AC1 24 MG A 302 27Q A 315 HOH A 402 HOH A 403 SITE 6 AC1 24 HOH A 404 HOH A 422 HOH A 471 HOH A 494 SITE 1 AC2 6 ADP A 301 27Q A 315 HOH A 401 HOH A 402 SITE 2 AC2 6 HOH A 403 HOH A 404 SITE 1 AC3 22 GLY A 9 GLU A 70 THR A 99 GLY A 100 SITE 2 AC3 22 THR A 101 SER A 102 ARG A 113 GLY A 116 SITE 3 AC3 22 ILE A 117 THR A 172 ALA A 173 GLU A 202 SITE 4 AC3 22 THR A 206 TYR A 240 ADP A 301 MG A 302 SITE 5 AC3 22 HOH A 401 HOH A 403 HOH A 404 HOH A 411 SITE 6 AC3 22 HOH A 429 HOH A 492 CRYST1 56.920 136.530 73.620 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013583 0.00000