HEADER TRANSFERASE/DNA 13-AUG-13 4M8O TITLE TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING DATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POL2 DOMAIN, UNP RESIDUES 1-1228; COMPND 5 SYNONYM: DNA POLYMERASE II SUBUNIT A; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PRIMER DNA; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: TEMPLATE DNA; COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: POL2, DUN2, YNL262W, N0825; SOURCE 7 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: SYNTHETIC CONSTRUCT; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHETIC CONSTRUCT KEYWDS DNA POLYMERASE B TYPE, DNA SYNTHESIS, PROTEIN-DNA COMPLEX, DNA KEYWDS 2 REPLICATION, METAL-BINDING, TRANSFERASE DNA COMPLEX, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.E.SAUER-ERIKSSON,M.HOGG,P.OSTERMAN,E.JOHANSSON REVDAT 4 20-SEP-23 4M8O 1 REMARK SEQADV LINK REVDAT 3 19-MAR-14 4M8O 1 JRNL REVDAT 2 11-DEC-13 4M8O 1 JRNL REVDAT 1 27-NOV-13 4M8O 0 JRNL AUTH M.HOGG,P.OSTERMAN,G.O.BYLUND,R.A.GANAI,E.B.LUNDSTROM, JRNL AUTH 2 A.E.SAUER-ERIKSSON,E.JOHANSSON JRNL TITL STRUCTURAL BASIS FOR PROCESSIVE DNA SYNTHESIS BY YEAST DNA JRNL TITL 2 POLYMERASE EPSILON. JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 49 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24292646 JRNL DOI 10.1038/NSMB.2712 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 69054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9173 REMARK 3 NUCLEIC ACID ATOMS : 535 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 459 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.604 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10043 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 9221 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13693 ; 1.866 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21301 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1122 ; 6.904 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 459 ;36.084 ;24.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1702 ;17.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;16.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1462 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10830 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2294 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4500 ; 3.282 ; 3.569 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4499 ; 3.280 ; 3.568 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5618 ; 5.009 ; 5.333 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5619 ; 5.009 ; 5.334 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5543 ; 3.908 ; 3.940 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5544 ; 3.908 ; 3.940 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 8076 ; 6.071 ; 5.736 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11856 ; 8.581 ;28.733 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11857 ; 8.580 ;28.736 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : PT COATED SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 50 MM HEPES-NAOH PH 7.0, REMARK 280 10 MM MGCL2, 400 MM LIAC, AND 10 MM 2-AMINOETHANESULFONIC ACID REMARK 280 (TAURINE) , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.24750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.24750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 TYR A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 23 REMARK 465 ASN A 24 REMARK 465 THR A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 TYR A 30 REMARK 465 THR A 91 REMARK 465 LEU A 92 REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 SER A 96 REMARK 465 ASN A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 ASN A 101 REMARK 465 SER A 102 REMARK 465 ASN A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 105 REMARK 465 GLU A 106 REMARK 465 ARG A 107 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 ASN A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 GLU A 231 REMARK 465 ASP A 669 REMARK 465 PHE A 670 REMARK 465 ASN A 671 REMARK 465 ARG A 672 REMARK 465 PRO A 673 REMARK 465 GLY A 674 REMARK 465 LYS A 675 REMARK 465 LYS A 1187 REMARK 465 GLU A 1188 REMARK 465 ASP A 1189 REMARK 465 LYS A 1190 REMARK 465 PHE A 1191 REMARK 465 LYS A 1192 REMARK 465 GLN A 1193 REMARK 465 THR A 1194 REMARK 465 SER A 1195 REMARK 465 LEU A 1196 REMARK 465 THR A 1197 REMARK 465 LYS A 1198 REMARK 465 PHE A 1199 REMARK 465 PHE A 1200 REMARK 465 SER A 1201 REMARK 465 LYS A 1202 REMARK 465 THR A 1203 REMARK 465 LYS A 1204 REMARK 465 ASN A 1205 REMARK 465 VAL A 1206 REMARK 465 PRO A 1207 REMARK 465 THR A 1208 REMARK 465 MET A 1209 REMARK 465 GLY A 1210 REMARK 465 LYS A 1211 REMARK 465 ILE A 1212 REMARK 465 LYS A 1213 REMARK 465 ASP A 1214 REMARK 465 ILE A 1215 REMARK 465 GLU A 1216 REMARK 465 ASP A 1217 REMARK 465 LEU A 1218 REMARK 465 PHE A 1219 REMARK 465 GLU A 1220 REMARK 465 PRO A 1221 REMARK 465 THR A 1222 REMARK 465 VAL A 1223 REMARK 465 GLU A 1224 REMARK 465 GLU A 1225 REMARK 465 ASP A 1226 REMARK 465 ASN A 1227 REMARK 465 ALA A 1228 REMARK 465 C38 T 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I5 5IU P 10 CL CL P 101 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5IU P 10 O3' DOC P 11 P -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 747 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 5IU P 10 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DOC P 11 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 52 76.78 -116.15 REMARK 500 PHE A 64 107.22 -58.74 REMARK 500 ASP A 68 34.35 -99.71 REMARK 500 THR A 109 -163.89 -102.68 REMARK 500 THR A 110 -158.48 -119.59 REMARK 500 ARG A 220 -77.22 -118.74 REMARK 500 ASN A 224 -82.43 -94.88 REMARK 500 LEU A 298 6.52 58.96 REMARK 500 VAL A 305 -31.75 -133.47 REMARK 500 ILE A 327 -51.66 -121.84 REMARK 500 TYR A 343 67.48 -110.78 REMARK 500 PHE A 382 -76.42 -116.05 REMARK 500 SER A 602 -159.50 -127.12 REMARK 500 SER A 643 63.32 36.17 REMARK 500 ALA A 661 59.59 -107.21 REMARK 500 ASP A 664 47.11 -148.85 REMARK 500 CYS A 677 -48.23 72.32 REMARK 500 VAL A 750 -76.54 -77.47 REMARK 500 PRO A 768 38.33 -93.19 REMARK 500 ILE A 798 -20.06 -166.56 REMARK 500 ASP A 802 150.49 -44.96 REMARK 500 ASP A 807 -60.99 88.54 REMARK 500 THR A 876 -61.38 68.26 REMARK 500 ASP A 877 17.15 -142.89 REMARK 500 GLU A 889 -99.45 -120.79 REMARK 500 ASN A 940 109.80 -168.02 REMARK 500 GLU A 991 151.71 73.81 REMARK 500 MET A1036 42.00 -79.61 REMARK 500 LYS A1054 -163.55 -112.08 REMARK 500 ILE A1137 -38.54 -35.36 REMARK 500 ASN A1169 99.31 -26.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 640 OD1 REMARK 620 2 VAL A 641 O 82.5 REMARK 620 3 ASP A 877 OD2 89.4 81.9 REMARK 620 4 DTP A1301 O1B 172.8 90.3 89.5 REMARK 620 5 DTP A1301 O3G 88.3 92.7 174.4 92.1 REMARK 620 6 DTP A1301 O1A 96.5 170.1 88.2 90.6 97.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 665 SG REMARK 620 2 CYS A 668 SG 112.3 REMARK 620 3 CYS A 677 SG 104.3 107.6 REMARK 620 4 CYS A 763 SG 108.3 113.6 110.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAU A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAU A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 102 DBREF 4M8O A 1 1228 UNP P21951 DPOE_YEAST 1 1228 DBREF 4M8O P 1 11 PDB 4M8O 4M8O 1 11 DBREF 4M8O T 1 16 PDB 4M8O 4M8O 1 16 SEQADV 4M8O ALA A 290 UNP P21951 ASP 290 ENGINEERED MUTATION SEQADV 4M8O ALA A 292 UNP P21951 GLU 292 ENGINEERED MUTATION SEQRES 1 A 1228 MET MET PHE GLY LYS LYS LYS ASN ASN GLY GLY SER SER SEQRES 2 A 1228 THR ALA ARG TYR SER ALA GLY ASN LYS TYR ASN THR LEU SEQRES 3 A 1228 SER ASN ASN TYR ALA LEU SER ALA GLN GLN LEU LEU ASN SEQRES 4 A 1228 ALA SER LYS ILE ASP ASP ILE ASP SER MET MET GLY PHE SEQRES 5 A 1228 GLU ARG TYR VAL PRO PRO GLN TYR ASN GLY ARG PHE ASP SEQRES 6 A 1228 ALA LYS ASP ILE ASP GLN ILE PRO GLY ARG VAL GLY TRP SEQRES 7 A 1228 LEU THR ASN MET HIS ALA THR LEU VAL SER GLN GLU THR SEQRES 8 A 1228 LEU SER SER GLY SER ASN GLY GLY GLY ASN SER ASN ASP SEQRES 9 A 1228 GLY GLU ARG VAL THR THR ASN GLN GLY ILE SER GLY VAL SEQRES 10 A 1228 ASP PHE TYR PHE LEU ASP GLU GLU GLY GLY SER PHE LYS SEQRES 11 A 1228 SER THR VAL VAL TYR ASP PRO TYR PHE PHE ILE ALA CYS SEQRES 12 A 1228 ASN ASP GLU SER ARG VAL ASN ASP VAL GLU GLU LEU VAL SEQRES 13 A 1228 LYS LYS TYR LEU GLU SER CYS LEU LYS SER LEU GLN ILE SEQRES 14 A 1228 ILE ARG LYS GLU ASP LEU THR MET ASP ASN HIS LEU LEU SEQRES 15 A 1228 GLY LEU GLN LYS THR LEU ILE LYS LEU SER PHE VAL ASN SEQRES 16 A 1228 SER ASN GLN LEU PHE GLU ALA ARG LYS LEU LEU ARG PRO SEQRES 17 A 1228 ILE LEU GLN ASP ASN ALA ASN ASN ASN VAL GLN ARG ASN SEQRES 18 A 1228 ILE TYR ASN VAL ALA ALA ASN GLY SER GLU LYS VAL ASP SEQRES 19 A 1228 ALA LYS HIS LEU ILE GLU ASP ILE ARG GLU TYR ASP VAL SEQRES 20 A 1228 PRO TYR HIS VAL ARG VAL SER ILE ASP LYS ASP ILE ARG SEQRES 21 A 1228 VAL GLY LYS TRP TYR LYS VAL THR GLN GLN GLY PHE ILE SEQRES 22 A 1228 GLU ASP THR ARG LYS ILE ALA PHE ALA ASP PRO VAL VAL SEQRES 23 A 1228 MET ALA PHE ALA ILE ALA THR THR LYS PRO PRO LEU LYS SEQRES 24 A 1228 PHE PRO ASP SER ALA VAL ASP GLN ILE MET MET ILE SER SEQRES 25 A 1228 TYR MET ILE ASP GLY GLU GLY PHE LEU ILE THR ASN ARG SEQRES 26 A 1228 GLU ILE ILE SER GLU ASP ILE GLU ASP PHE GLU TYR THR SEQRES 27 A 1228 PRO LYS PRO GLU TYR PRO GLY PHE PHE THR ILE PHE ASN SEQRES 28 A 1228 GLU ASN ASP GLU VAL ALA LEU LEU GLN ARG PHE PHE GLU SEQRES 29 A 1228 HIS ILE ARG ASP VAL ARG PRO THR VAL ILE SER THR PHE SEQRES 30 A 1228 ASN GLY ASP PHE PHE ASP TRP PRO PHE ILE HIS ASN ARG SEQRES 31 A 1228 SER LYS ILE HIS GLY LEU ASP MET PHE ASP GLU ILE GLY SEQRES 32 A 1228 PHE ALA PRO ASP ALA GLU GLY GLU TYR LYS SER SER TYR SEQRES 33 A 1228 CYS SER HIS MET ASP CYS PHE ARG TRP VAL LYS ARG ASP SEQRES 34 A 1228 SER TYR LEU PRO GLN GLY SER GLN GLY LEU LYS ALA VAL SEQRES 35 A 1228 THR GLN SER LYS LEU GLY TYR ASN PRO ILE GLU LEU ASP SEQRES 36 A 1228 PRO GLU LEU MET THR PRO TYR ALA PHE GLU LYS PRO GLN SEQRES 37 A 1228 HIS LEU SER GLU TYR SER VAL SER ASP ALA VAL ALA THR SEQRES 38 A 1228 TYR TYR LEU TYR MET LYS TYR VAL HIS PRO PHE ILE PHE SEQRES 39 A 1228 SER LEU CYS THR ILE ILE PRO LEU ASN PRO ASP GLU THR SEQRES 40 A 1228 LEU ARG LYS GLY THR GLY THR LEU CYS GLU MET LEU LEU SEQRES 41 A 1228 MET VAL GLN ALA TYR GLN HIS ASN ILE LEU LEU PRO ASN SEQRES 42 A 1228 LYS HIS THR ASP PRO ILE GLU ARG PHE TYR ASP GLY HIS SEQRES 43 A 1228 LEU LEU GLU SER GLU THR TYR VAL GLY GLY HIS VAL GLU SEQRES 44 A 1228 SER LEU GLU ALA GLY VAL PHE ARG SER ASP LEU LYS ASN SEQRES 45 A 1228 GLU PHE LYS ILE ASP PRO SER ALA ILE ASP GLU LEU LEU SEQRES 46 A 1228 GLN GLU LEU PRO GLU ALA LEU LYS PHE SER VAL GLU VAL SEQRES 47 A 1228 GLU ASN LYS SER SER VAL ASP LYS VAL THR ASN PHE GLU SEQRES 48 A 1228 GLU ILE LYS ASN GLN ILE THR GLN LYS LEU LEU GLU LEU SEQRES 49 A 1228 LYS GLU ASN ASN ILE ARG ASN GLU LEU PRO LEU ILE TYR SEQRES 50 A 1228 HIS VAL ASP VAL ALA SER MET TYR PRO ASN ILE MET THR SEQRES 51 A 1228 THR ASN ARG LEU GLN PRO ASP SER ILE LYS ALA GLU ARG SEQRES 52 A 1228 ASP CYS ALA SER CYS ASP PHE ASN ARG PRO GLY LYS THR SEQRES 53 A 1228 CYS ALA ARG LYS LEU LYS TRP ALA TRP ARG GLY GLU PHE SEQRES 54 A 1228 PHE PRO SER LYS MET ASP GLU TYR ASN MET ILE LYS ARG SEQRES 55 A 1228 ALA LEU GLN ASN GLU THR PHE PRO ASN LYS ASN LYS PHE SEQRES 56 A 1228 SER LYS LYS LYS VAL LEU THR PHE ASP GLU LEU SER TYR SEQRES 57 A 1228 ALA ASP GLN VAL ILE HIS ILE LYS LYS ARG LEU THR GLU SEQRES 58 A 1228 TYR SER ARG LYS VAL TYR HIS ARG VAL LYS VAL SER GLU SEQRES 59 A 1228 ILE VAL GLU ARG GLU ALA ILE VAL CYS GLN ARG GLU ASN SEQRES 60 A 1228 PRO PHE TYR VAL ASP THR VAL LYS SER PHE ARG ASP ARG SEQRES 61 A 1228 ARG TYR GLU PHE LYS GLY LEU ALA LYS THR TRP LYS GLY SEQRES 62 A 1228 ASN LEU SER LYS ILE ASP PRO SER ASP LYS HIS ALA ARG SEQRES 63 A 1228 ASP GLU ALA LYS LYS MET ILE VAL LEU TYR ASP SER LEU SEQRES 64 A 1228 GLN LEU ALA HIS LYS VAL ILE LEU ASN SER PHE TYR GLY SEQRES 65 A 1228 TYR VAL MET ARG LYS GLY SER ARG TRP TYR SER MET GLU SEQRES 66 A 1228 MET ALA GLY ILE THR CYS LEU THR GLY ALA THR ILE ILE SEQRES 67 A 1228 GLN MET ALA ARG ALA LEU VAL GLU ARG VAL GLY ARG PRO SEQRES 68 A 1228 LEU GLU LEU ASP THR ASP GLY ILE TRP CYS ILE LEU PRO SEQRES 69 A 1228 LYS SER PHE PRO GLU THR TYR PHE PHE THR LEU GLU ASN SEQRES 70 A 1228 GLY LYS LYS LEU TYR LEU SER TYR PRO CYS SER MET LEU SEQRES 71 A 1228 ASN TYR ARG VAL HIS GLN LYS PHE THR ASN HIS GLN TYR SEQRES 72 A 1228 GLN GLU LEU LYS ASP PRO LEU ASN TYR ILE TYR GLU THR SEQRES 73 A 1228 HIS SER GLU ASN THR ILE PHE PHE GLU VAL ASP GLY PRO SEQRES 74 A 1228 TYR LYS ALA MET ILE LEU PRO SER SER LYS GLU GLU GLY SEQRES 75 A 1228 LYS GLY ILE LYS LYS ARG TYR ALA VAL PHE ASN GLU ASP SEQRES 76 A 1228 GLY SER LEU ALA GLU LEU LYS GLY PHE GLU LEU LYS ARG SEQRES 77 A 1228 ARG GLY GLU LEU GLN LEU ILE LYS ASN PHE GLN SER ASP SEQRES 78 A 1228 ILE PHE LYS VAL PHE LEU GLU GLY ASP THR LEU GLU GLY SEQRES 79 A 1228 CYS TYR SER ALA VAL ALA SER VAL CYS ASN ARG TRP LEU SEQRES 80 A 1228 ASP VAL LEU ASP SER HIS GLY LEU MET LEU GLU ASP GLU SEQRES 81 A 1228 ASP LEU VAL SER LEU ILE CYS GLU ASN ARG SER MET SER SEQRES 82 A 1228 LYS THR LEU LYS GLU TYR GLU GLY GLN LYS SER THR SER SEQRES 83 A 1228 ILE THR THR ALA ARG ARG LEU GLY ASP PHE LEU GLY GLU SEQRES 84 A 1228 ASP MET VAL LYS ASP LYS GLY LEU GLN CYS LYS TYR ILE SEQRES 85 A 1228 ILE SER SER LYS PRO PHE ASN ALA PRO VAL THR GLU ARG SEQRES 86 A 1228 ALA ILE PRO VAL ALA ILE PHE SER ALA ASP ILE PRO ILE SEQRES 87 A 1228 LYS ARG SER PHE LEU ARG ARG TRP THR LEU ASP PRO SER SEQRES 88 A 1228 LEU GLU ASP LEU ASP ILE ARG THR ILE ILE ASP TRP GLY SEQRES 89 A 1228 TYR TYR ARG GLU ARG LEU GLY SER ALA ILE GLN LYS ILE SEQRES 90 A 1228 ILE THR ILE PRO ALA ALA LEU GLN GLY VAL SER ASN PRO SEQRES 91 A 1228 VAL PRO ARG VAL GLU HIS PRO ASP TRP LEU LYS ARG LYS SEQRES 92 A 1228 ILE ALA THR LYS GLU ASP LYS PHE LYS GLN THR SER LEU SEQRES 93 A 1228 THR LYS PHE PHE SER LYS THR LYS ASN VAL PRO THR MET SEQRES 94 A 1228 GLY LYS ILE LYS ASP ILE GLU ASP LEU PHE GLU PRO THR SEQRES 95 A 1228 VAL GLU GLU ASP ASN ALA SEQRES 1 P 11 5IU DA DA C38 C38 DG C38 DG 5IU 5IU DOC SEQRES 1 T 16 C38 5IU C38 5IU DT DG DA DA C38 DG C38 DG DG SEQRES 2 T 16 5IU 5IU DA MODRES 4M8O 5IU P 1 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O C38 P 4 DC MODRES 4M8O C38 P 5 DC MODRES 4M8O C38 P 7 DC MODRES 4M8O 5IU P 9 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O 5IU P 10 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O DOC P 11 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 4M8O 5IU T 2 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O C38 T 3 DC MODRES 4M8O 5IU T 4 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O C38 T 9 DC MODRES 4M8O C38 T 11 DC MODRES 4M8O 5IU T 14 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE MODRES 4M8O 5IU T 15 DU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HET 5IU P 1 20 HET C38 P 4 20 HET C38 P 5 20 HET C38 P 7 20 HET 5IU P 9 20 HET 5IU P 10 20 HET DOC P 11 18 HET 5IU T 2 20 HET C38 T 3 20 HET 5IU T 4 40 HET C38 T 9 20 HET C38 T 11 20 HET 5IU T 14 20 HET 5IU T 15 20 HET DTP A1301 30 HET MG A1302 1 HET ZN A1303 1 HET TAU A1304 7 HET TAU A1305 7 HET CL P 101 1 HET CL P 102 1 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM C38 5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM TAU 2-AMINOETHANESULFONIC ACID HETNAM CL CHLORIDE ION FORMUL 2 5IU 7(C9 H12 I N2 O8 P) FORMUL 2 C38 6(C9 H13 I N3 O7 P) FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 DTP C10 H16 N5 O12 P3 FORMUL 5 MG MG 2+ FORMUL 6 ZN ZN 2+ FORMUL 7 TAU 2(C2 H7 N O3 S) FORMUL 9 CL 2(CL 1-) FORMUL 11 HOH *459(H2 O) HELIX 1 1 LEU A 32 MET A 50 1 19 HELIX 2 2 ASP A 145 SER A 147 5 3 HELIX 3 3 ARG A 148 LEU A 160 1 13 HELIX 4 4 ASN A 179 GLY A 183 5 5 HELIX 5 5 ASN A 195 ASN A 216 1 22 HELIX 6 6 ASP A 234 HIS A 237 5 4 HELIX 7 7 PRO A 248 ASP A 258 1 11 HELIX 8 8 ASP A 354 ARG A 370 1 17 HELIX 9 9 PHE A 382 HIS A 394 1 13 HELIX 10 10 ASP A 397 GLY A 403 1 7 HELIX 11 11 CYS A 422 SER A 430 1 9 HELIX 12 12 PRO A 433 GLN A 437 5 5 HELIX 13 13 GLY A 438 GLY A 448 1 11 HELIX 14 14 ASP A 455 GLU A 457 5 3 HELIX 15 15 LEU A 458 LYS A 466 1 9 HELIX 16 16 LYS A 466 TYR A 488 1 23 HELIX 17 17 TYR A 488 THR A 498 1 11 HELIX 18 18 ASN A 503 LYS A 510 1 8 HELIX 19 19 GLY A 511 HIS A 527 1 17 HELIX 20 20 ASP A 577 VAL A 598 1 22 HELIX 21 21 SER A 603 VAL A 607 5 5 HELIX 22 22 ASN A 609 ASN A 627 1 19 HELIX 23 23 SER A 643 ARG A 653 1 11 HELIX 24 24 GLN A 655 ASP A 657 5 3 HELIX 25 25 LYS A 693 ASN A 706 1 14 HELIX 26 26 ASP A 724 LEU A 726 5 3 HELIX 27 27 SER A 727 HIS A 748 1 22 HELIX 28 28 PRO A 768 ILE A 798 1 31 HELIX 29 29 ASP A 807 TYR A 833 1 27 HELIX 30 30 VAL A 834 ARG A 836 5 3 HELIX 31 31 SER A 843 GLY A 869 1 27 HELIX 32 32 TYR A 905 THR A 919 1 15 HELIX 33 33 GLN A 993 PHE A 1003 1 11 HELIX 34 34 LYS A 1004 GLU A 1008 5 5 HELIX 35 35 THR A 1011 SER A 1032 1 22 HELIX 36 36 GLU A 1038 CYS A 1047 1 10 HELIX 37 37 THR A 1055 GLU A 1060 5 6 HELIX 38 38 SER A 1064 GLY A 1078 1 15 HELIX 39 39 GLU A 1079 LYS A 1083 5 5 HELIX 40 40 PRO A 1101 GLU A 1104 5 4 HELIX 41 41 ALA A 1110 ALA A 1114 5 5 HELIX 42 42 ASP A 1115 LEU A 1128 1 14 HELIX 43 43 ASP A 1136 ILE A 1141 1 6 HELIX 44 44 ASP A 1142 ILE A 1158 1 17 HELIX 45 45 ILE A 1158 GLN A 1165 1 8 HELIX 46 46 PRO A 1177 ILE A 1184 1 8 SHEET 1 A 5 SER A 128 VAL A 134 0 SHEET 2 A 5 ILE A 114 ASP A 123 -1 N PHE A 121 O PHE A 129 SHEET 3 A 5 ARG A 75 VAL A 87 -1 N THR A 80 O TYR A 120 SHEET 4 A 5 TRP A 264 THR A 268 -1 O VAL A 267 N ARG A 75 SHEET 5 A 5 GLY A 271 GLU A 274 -1 O ILE A 273 N LYS A 266 SHEET 1 B 4 SER A 166 LYS A 172 0 SHEET 2 B 4 LYS A 186 SER A 192 -1 O LEU A 188 N ILE A 170 SHEET 3 B 4 TYR A 138 CYS A 143 -1 N PHE A 139 O LEU A 191 SHEET 4 B 4 ILE A 239 ARG A 243 -1 O ASP A 241 N ALA A 142 SHEET 1 C 7 PHE A 335 GLU A 336 0 SHEET 2 C 7 PHE A 346 GLU A 352 -1 O PHE A 347 N PHE A 335 SHEET 3 C 7 GLU A 318 ASN A 324 1 N LEU A 321 O PHE A 350 SHEET 4 C 7 ILE A 308 ILE A 315 -1 N ILE A 311 O ILE A 322 SHEET 5 C 7 VAL A 286 THR A 293 -1 N ALA A 292 O MET A 309 SHEET 6 C 7 VAL A 373 THR A 376 1 O VAL A 373 N MET A 287 SHEET 7 C 7 SER A 418 ASP A 421 1 O SER A 418 N ILE A 374 SHEET 1 D 2 ALA A 405 PRO A 406 0 SHEET 2 D 2 TYR A 412 LYS A 413 -1 O LYS A 413 N ALA A 405 SHEET 1 E 5 PHE A 542 TYR A 543 0 SHEET 2 E 5 HIS A 546 TYR A 553 -1 O HIS A 546 N TYR A 543 SHEET 3 E 5 ALA A 678 PHE A 689 -1 O GLU A 688 N GLU A 549 SHEET 4 E 5 VAL A 752 CYS A 763 -1 O ARG A 758 N TRP A 683 SHEET 5 E 5 ILE A 659 LYS A 660 -1 N LYS A 660 O ILE A 761 SHEET 1 F 5 VAL A 558 SER A 560 0 SHEET 2 F 5 ARG A 870 ASP A 875 -1 O LEU A 874 N GLU A 559 SHEET 3 F 5 GLY A 878 PRO A 884 -1 O ILE A 882 N ARG A 870 SHEET 4 F 5 PRO A 634 VAL A 641 -1 N VAL A 639 O ILE A 879 SHEET 5 F 5 PHE A 944 TYR A 950 -1 O GLU A 945 N ASP A 640 SHEET 1 G 4 GLY A 564 ARG A 567 0 SHEET 2 G 4 ALA A 952 LEU A 955 -1 O LEU A 955 N GLY A 564 SHEET 3 G 4 TYR A 969 PHE A 972 -1 O ALA A 970 N ILE A 954 SHEET 4 G 4 LEU A 978 LYS A 982 -1 O GLU A 980 N VAL A 971 SHEET 1 H 2 ASN A 572 LYS A 575 0 SHEET 2 H 2 ILE A 629 GLU A 632 -1 O GLU A 632 N ASN A 572 SHEET 1 I 2 THR A 708 PRO A 710 0 SHEET 2 I 2 VAL A 720 THR A 722 -1 O LEU A 721 N PHE A 709 SHEET 1 J 2 THR A 890 THR A 894 0 SHEET 2 J 2 LYS A 900 SER A 904 -1 O LEU A 903 N TYR A 891 SHEET 1 K 2 ASN A 920 ASP A 928 0 SHEET 2 K 2 ILE A 933 GLU A 939 -1 O GLU A 939 N ASN A 920 SHEET 1 L 4 GLU A 991 LEU A 992 0 SHEET 2 L 4 GLU A1048 SER A1051 -1 O ASN A1049 N GLU A 991 SHEET 3 L 4 GLN A1088 ILE A1093 -1 O TYR A1091 N GLU A1048 SHEET 4 L 4 ALA A1106 PRO A1108 -1 O ILE A1107 N ILE A1092 LINK O3' 5IU P 1 P DA P 2 1555 1555 1.61 LINK O3' DA P 3 P C38 P 4 1555 1555 1.60 LINK O3' C38 P 4 P C38 P 5 1555 1555 1.61 LINK O3' C38 P 5 P DG P 6 1555 1555 1.57 LINK O3' DG P 6 P C38 P 7 1555 1555 1.57 LINK O3' C38 P 7 P DG P 8 1555 1555 1.61 LINK O3' DG P 8 P 5IU P 9 1555 1555 1.55 LINK O3' 5IU P 9 P 5IU P 10 1555 1555 1.60 LINK O3' 5IU P 10 P DOC P 11 1555 1555 1.53 LINK O3' 5IU T 2 P C38 T 3 1555 1555 1.62 LINK O3' C38 T 3 P A5IU T 4 1555 1555 1.61 LINK O3' C38 T 3 P B5IU T 4 1555 1555 1.64 LINK O3'A5IU T 4 P DT T 5 1555 1555 1.59 LINK O3'B5IU T 4 P DT T 5 1555 1555 1.57 LINK O3' DA T 8 P C38 T 9 1555 1555 1.64 LINK O3' C38 T 9 P DG T 10 1555 1555 1.60 LINK O3' DG T 10 P C38 T 11 1555 1555 1.64 LINK O3' C38 T 11 P DG T 12 1555 1555 1.64 LINK O3' DG T 13 P 5IU T 14 1555 1555 1.62 LINK O3' 5IU T 14 P 5IU T 15 1555 1555 1.63 LINK O3' 5IU T 15 P DA T 16 1555 1555 1.60 LINK OD1 ASP A 640 MG MG A1302 1555 1555 1.93 LINK O VAL A 641 MG MG A1302 1555 1555 2.16 LINK SG CYS A 665 ZN ZN A1303 1555 1555 2.32 LINK SG CYS A 668 ZN ZN A1303 1555 1555 2.30 LINK SG CYS A 677 ZN ZN A1303 1555 1555 2.22 LINK SG CYS A 763 ZN ZN A1303 1555 1555 2.42 LINK OD2 ASP A 877 MG MG A1302 1555 1555 2.30 LINK O1B DTP A1301 MG MG A1302 1555 1555 2.01 LINK O3G DTP A1301 MG MG A1302 1555 1555 2.04 LINK O1A DTP A1301 MG MG A1302 1555 1555 2.08 CISPEP 1 ARG A 663 ASP A 664 0 0.10 CISPEP 2 ALA A 666 SER A 667 0 2.46 CISPEP 3 TYR A 747 HIS A 748 0 17.33 CISPEP 4 ASP A 802 LYS A 803 0 -0.07 CISPEP 5 ARG A 806 ASP A 807 0 -25.20 CISPEP 6 GLY A 948 PRO A 949 0 3.74 CISPEP 7 LYS A 1096 PRO A 1097 0 -0.32 SITE 1 AC1 19 ASP A 640 VAL A 641 ALA A 642 SER A 643 SITE 2 AC1 19 MET A 644 TYR A 645 ARG A 781 LYS A 785 SITE 3 AC1 19 LYS A 824 ASN A 828 ASP A 877 MG A1302 SITE 4 AC1 19 HOH A1430 HOH A1432 HOH A1655 HOH A1742 SITE 5 AC1 19 DOC P 11 DT T 5 DG T 6 SITE 1 AC2 4 ASP A 640 VAL A 641 ASP A 877 DTP A1301 SITE 1 AC3 4 CYS A 665 CYS A 668 CYS A 677 CYS A 763 SITE 1 AC4 4 LYS A 427 ARG A 428 HOH A1741 HOH A1799 SITE 1 AC5 6 ALA A 979 GLU A 980 LEU A 981 LYS A 982 SITE 2 AC5 6 LYS A 987 HOH A1754 SITE 1 AC6 2 5IU P 10 HOH P 204 SITE 1 AC7 1 5IU P 9 CRYST1 148.495 68.919 149.852 90.00 109.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006734 0.000000 0.002385 0.00000 SCALE2 0.000000 0.014510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007079 0.00000