HEADER HYDROLASE 13-AUG-13 4M8U TITLE THE STRUCTURE OF MALL MUTANT ENZYME V200A FROM BACILLUS SUBTILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGO-1,6-GLUCOSIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEXTRIN 6-ALPHA-D-GLUCANOHYDROLASE, OLIGOSACCHARIDE ALPHA-1, COMPND 5 6-GLUCOSIDASE 1, SUCRASE-ISOMALTASE 1, ISOMALTASE 1; COMPND 6 EC: 3.2.1.10; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU34560, MALL, YVDL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS TIM BARREL, ALPHA GLUCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.K.HOBBS,W.JIAO,A.D.EASTER,E.J.PARKER,L.A.SCHIPPER,V.L.ARCUS REVDAT 3 28-FEB-24 4M8U 1 REMARK SEQADV LINK REVDAT 2 27-NOV-13 4M8U 1 JRNL REVDAT 1 25-SEP-13 4M8U 0 JRNL AUTH J.K.HOBBS,W.JIAO,A.D.EASTER,E.J.PARKER,L.A.SCHIPPER, JRNL AUTH 2 V.L.ARCUS JRNL TITL CHANGE IN HEAT CAPACITY FOR ENZYME CATALYSIS DETERMINES JRNL TITL 2 TEMPERATURE DEPENDENCE OF ENZYME CATALYZED RATES. JRNL REF ACS CHEM.BIOL. V. 8 2388 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 24015933 JRNL DOI 10.1021/CB4005029 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 90709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 612 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4838 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4398 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6556 ; 2.112 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10142 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 7.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;35.643 ;24.466 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;12.075 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5526 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1174 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 561 REMARK 3 RESIDUE RANGE : A 601 A 606 REMARK 3 RESIDUE RANGE : A 701 A 1312 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5110 -5.1573 18.4919 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: 0.0083 REMARK 3 T33: 0.0416 T12: 0.0053 REMARK 3 T13: -0.0078 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.4088 L22: 0.6875 REMARK 3 L33: 0.8988 L12: 0.0783 REMARK 3 L13: -0.0590 L23: -0.3642 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0164 S13: -0.0313 REMARK 3 S21: -0.0020 S22: -0.0178 S23: -0.0160 REMARK 3 S31: -0.0312 S32: -0.0340 S33: -0.0050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4M8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9536 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 56.639 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.5, 22% (W/V) PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.16500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 517 CE NZ REMARK 470 LYS A 551 CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 345 NZ REMARK 480 LYS A 411 CD CE NZ REMARK 480 LYS A 475 CD REMARK 480 LYS A 478 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1114 O HOH A 1206 1.81 REMARK 500 O HOH A 1105 O HOH A 1116 1.82 REMARK 500 O HOH A 1227 O HOH A 1233 1.97 REMARK 500 O HOH A 1119 O HOH A 1227 2.16 REMARK 500 O HOH A 884 O HOH A 1286 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 383 CD GLU A 383 OE1 0.074 REMARK 500 GLU A 408 CD GLU A 408 OE1 0.075 REMARK 500 LYS A 478 CG LYS A 478 CD -0.252 REMARK 500 GLU A 525 CB GLU A 525 CG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PHE A 74 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 162 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 183 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 285 OD1 - CG - OD2 ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 339 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 386 CB - CG - OD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ASP A 386 CB - CG - OD2 ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 394 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU A 396 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 418 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 LYS A 431 CD - CE - NZ ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG A 474 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LYS A 478 CB - CG - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG A 530 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 PRO A 539 O - C - N ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 542 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 542 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 -66.95 -94.39 REMARK 500 SER A 55 141.92 -173.24 REMARK 500 SER A 145 154.61 84.72 REMARK 500 PHE A 163 -135.63 -105.37 REMARK 500 HIS A 217 -0.05 81.08 REMARK 500 VAL A 244 -67.94 -136.07 REMARK 500 GLU A 274 -105.70 -121.34 REMARK 500 ASN A 291 55.10 -149.61 REMARK 500 ARG A 344 -110.02 -122.59 REMARK 500 LEU A 513 55.77 -93.73 REMARK 500 TYR A 553 18.46 57.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 216 HIS A 217 129.93 REMARK 500 PRO A 539 GLU A 541 -149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASN A 22 OD1 85.7 REMARK 620 3 ASP A 24 OD1 87.5 84.1 REMARK 620 4 PHE A 26 O 85.4 167.6 86.9 REMARK 620 5 ASP A 28 OD2 88.6 87.0 170.6 101.4 REMARK 620 6 HOH A 701 O 169.2 89.6 82.4 97.6 100.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M56 RELATED DB: PDB REMARK 900 RELATED ID: 4MAZ RELATED DB: PDB REMARK 900 RELATED ID: 4MB1 RELATED DB: PDB DBREF 4M8U A 1 561 UNP O06994 O16G1_BACSU 1 561 SEQADV 4M8U ALA A 200 UNP O06994 VAL 200 ENGINEERED MUTATION SEQADV 4M8U A UNP O06994 GLN 540 DELETION SEQRES 1 A 560 MET SER GLU TRP TRP LYS GLU ALA VAL VAL TYR GLN ILE SEQRES 2 A 560 TYR PRO ARG SER PHE TYR ASP ALA ASN GLY ASP GLY PHE SEQRES 3 A 560 GLY ASP LEU GLN GLY VAL ILE GLN LYS LEU ASP TYR ILE SEQRES 4 A 560 LYS ASN LEU GLY ALA ASP VAL ILE TRP LEU SER PRO VAL SEQRES 5 A 560 PHE ASP SER PRO GLN ASP ASP ASN GLY TYR ASP ILE SER SEQRES 6 A 560 ASP TYR LYS ASN MET TYR GLU LYS PHE GLY THR ASN GLU SEQRES 7 A 560 ASP MET PHE GLN LEU ILE ASP GLU VAL HIS LYS ARG GLY SEQRES 8 A 560 MET LYS ILE VAL MET ASP LEU VAL VAL ASN HIS THR SER SEQRES 9 A 560 ASP GLU HIS ALA TRP PHE ALA GLU SER ARG LYS SER LYS SEQRES 10 A 560 ASP ASN PRO TYR ARG ASP TYR TYR LEU TRP LYS ASP PRO SEQRES 11 A 560 LYS PRO ASP GLY SER GLU PRO ASN ASN TRP GLY SER ILE SEQRES 12 A 560 PHE SER GLY SER ALA TRP THR TYR ASP GLU GLY THR GLY SEQRES 13 A 560 GLN TYR TYR LEU HIS TYR PHE SER LYS LYS GLN PRO ASP SEQRES 14 A 560 LEU ASN TRP GLU ASN GLU ALA VAL ARG ARG GLU VAL TYR SEQRES 15 A 560 ASP VAL MET ARG PHE TRP MET ASP ARG GLY VAL ASP GLY SEQRES 16 A 560 TRP ARG MET ASP ALA ILE GLY SER ILE SER LYS TYR THR SEQRES 17 A 560 ASP PHE PRO ASP TYR GLU THR ASP HIS SER ARG SER TYR SEQRES 18 A 560 ILE VAL GLY ARG TYR HIS SER ASN GLY PRO ARG LEU HIS SEQRES 19 A 560 GLU PHE ILE GLN GLU MET ASN ARG GLU VAL LEU SER HIS SEQRES 20 A 560 TYR ASP CYS MET THR VAL GLY GLU ALA ASN GLY SER ASP SEQRES 21 A 560 ILE GLU GLU ALA LYS LYS TYR THR ASP ALA SER ARG GLN SEQRES 22 A 560 GLU LEU ASN MET ILE PHE THR PHE GLU HIS MET ASP ILE SEQRES 23 A 560 ASP LYS GLU GLN ASN SER PRO ASN GLY LYS TRP GLN ILE SEQRES 24 A 560 LYS PRO PHE ASP LEU ILE ALA LEU LYS LYS THR MET THR SEQRES 25 A 560 ARG TRP GLN THR GLY LEU MET ASN VAL GLY TRP ASN THR SEQRES 26 A 560 LEU TYR PHE GLU ASN HIS ASP GLN PRO ARG VAL ILE SER SEQRES 27 A 560 ARG TRP GLY ASN ASP ARG LYS LEU ARG LYS GLU CYS ALA SEQRES 28 A 560 LYS ALA PHE ALA THR VAL LEU HIS GLY MET LYS GLY THR SEQRES 29 A 560 PRO PHE ILE TYR GLN GLY GLU GLU ILE GLY MET VAL ASN SEQRES 30 A 560 SER ASP MET PRO LEU GLU MET TYR ASP ASP LEU GLU ILE SEQRES 31 A 560 LYS ASN ALA TYR ARG GLU LEU VAL VAL GLU ASN LYS THR SEQRES 32 A 560 MET SER GLU LYS GLU PHE VAL LYS ALA VAL MET ILE LYS SEQRES 33 A 560 GLY ARG ASP HIS ALA ARG THR PRO MET GLN TRP ASP ALA SEQRES 34 A 560 GLY LYS HIS ALA GLY PHE THR ALA GLY ASP PRO TRP ILE SEQRES 35 A 560 PRO VAL ASN SER ARG TYR GLN ASP ILE ASN VAL LYS GLU SEQRES 36 A 560 SER LEU GLU ASP GLN ASP SER ILE PHE PHE TYR TYR GLN SEQRES 37 A 560 LYS LEU ILE GLN LEU ARG LYS GLN TYR LYS ILE MET ILE SEQRES 38 A 560 TYR GLY ASP TYR GLN LEU LEU GLN GLU ASN ASP PRO GLN SEQRES 39 A 560 VAL PHE SER TYR LEU ARG GLU TYR ARG GLY GLU LYS LEU SEQRES 40 A 560 LEU VAL VAL VAL ASN LEU SER GLU GLU LYS ALA LEU PHE SEQRES 41 A 560 GLU ALA PRO PRO GLU LEU ILE HIS GLU ARG TRP LYS VAL SEQRES 42 A 560 LEU ILE SER ASN TYR PRO GLU ARG ALA ASP LEU LYS SER SEQRES 43 A 560 ILE SER LEU LYS PRO TYR GLU ALA VAL MET GLY ILE SER SEQRES 44 A 560 ILE HET TRS A 601 8 HET GOL A 602 6 HET CA A 603 1 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 4 CA CA 2+ FORMUL 8 HOH *612(H2 O) HELIX 1 1 GLU A 3 ALA A 8 1 6 HELIX 2 2 TYR A 14 PHE A 18 5 5 HELIX 3 3 ASP A 28 GLY A 43 1 16 HELIX 4 4 THR A 76 ARG A 90 1 15 HELIX 5 5 HIS A 107 ARG A 114 1 8 HELIX 6 6 TYR A 121 TYR A 125 5 5 HELIX 7 7 ASN A 174 ARG A 191 1 18 HELIX 8 8 ALA A 200 ILE A 204 5 5 HELIX 9 9 GLY A 224 SER A 228 5 5 HELIX 10 10 ARG A 232 VAL A 244 1 13 HELIX 11 11 LEU A 245 TYR A 248 5 4 HELIX 12 12 ASP A 260 ASP A 269 1 10 HELIX 13 13 ALA A 270 GLN A 273 5 4 HELIX 14 14 PHE A 281 ASP A 285 5 5 HELIX 15 15 ASN A 294 GLN A 298 5 5 HELIX 16 16 ASP A 303 LEU A 318 1 16 HELIX 17 17 ARG A 335 GLY A 341 1 7 HELIX 18 18 LEU A 346 GLY A 360 1 15 HELIX 19 19 GLY A 370 GLY A 374 5 5 HELIX 20 20 PRO A 381 TYR A 385 5 5 HELIX 21 21 ASP A 387 VAL A 398 1 12 HELIX 22 22 SER A 405 GLY A 417 1 13 HELIX 23 23 ARG A 418 ARG A 422 5 5 HELIX 24 24 GLY A 430 PHE A 435 5 6 HELIX 25 25 ASN A 452 ASP A 459 1 8 HELIX 26 26 SER A 462 TYR A 477 1 16 HELIX 27 27 LYS A 478 GLY A 483 1 6 HELIX 28 28 PRO A 523 ILE A 527 5 5 SHEET 1 A 8 MET A 277 PHE A 279 0 SHEET 2 A 8 MET A 251 GLU A 255 1 N GLY A 254 O PHE A 279 SHEET 3 A 8 GLY A 195 MET A 198 1 N MET A 198 O GLU A 255 SHEET 4 A 8 LYS A 93 LEU A 98 1 N LEU A 98 O ARG A 197 SHEET 5 A 8 VAL A 46 LEU A 49 1 N ILE A 47 O VAL A 95 SHEET 6 A 8 VAL A 10 ILE A 13 1 N TYR A 11 O VAL A 46 SHEET 7 A 8 THR A 364 TYR A 368 1 O ILE A 367 N VAL A 10 SHEET 8 A 8 THR A 325 LEU A 326 1 N LEU A 326 O THR A 364 SHEET 1 B 2 PHE A 53 ASP A 54 0 SHEET 2 B 2 ASP A 66 MET A 70 -1 O ASN A 69 N ASP A 54 SHEET 1 C 3 TRP A 127 LYS A 128 0 SHEET 2 C 3 GLN A 157 LEU A 160 -1 O TYR A 158 N LYS A 128 SHEET 3 C 3 TRP A 149 ASP A 152 -1 N ASP A 152 O GLN A 157 SHEET 1 D 5 GLN A 486 LEU A 488 0 SHEET 2 D 5 VAL A 495 TYR A 502 -1 O LEU A 499 N GLN A 486 SHEET 3 D 5 GLU A 505 ASN A 512 -1 O VAL A 511 N PHE A 496 SHEET 4 D 5 ALA A 555 SER A 560 -1 O VAL A 556 N VAL A 510 SHEET 5 D 5 TRP A 531 SER A 536 -1 N LEU A 534 O MET A 557 SHEET 1 E 2 ALA A 518 GLU A 521 0 SHEET 2 E 2 SER A 547 LEU A 550 -1 O ILE A 548 N PHE A 520 LINK OD1 ASP A 20 CA CA A 603 1555 1555 2.29 LINK OD1 ASN A 22 CA CA A 603 1555 1555 2.22 LINK OD1 ASP A 24 CA CA A 603 1555 1555 2.35 LINK O PHE A 26 CA CA A 603 1555 1555 2.25 LINK OD2 ASP A 28 CA CA A 603 1555 1555 2.26 LINK CA CA A 603 O HOH A 701 1555 1555 2.32 SITE 1 AC1 11 ASP A 59 TYR A 62 HIS A 102 PHE A 144 SITE 2 AC1 11 PHE A 163 ASP A 199 GLU A 255 ARG A 418 SITE 3 AC1 11 GOL A 602 HOH A 725 HOH A 733 SITE 1 AC2 9 PHE A 163 GLU A 255 LYS A 296 ASP A 332 SITE 2 AC2 9 GLU A 389 ARG A 418 TRS A 601 HOH A 872 SITE 3 AC2 9 HOH A1163 SITE 1 AC3 6 ASP A 20 ASN A 22 ASP A 24 PHE A 26 SITE 2 AC3 6 ASP A 28 HOH A 701 SITE 1 AC4 7 ASP A 343 ARG A 344 ARG A 347 LYS A 348 SITE 2 AC4 7 ARG A 447 ASP A 450 HOH A1249 SITE 1 AC5 8 ILE A 143 PRO A 293 ASN A 294 TRP A 297 SITE 2 AC5 8 LEU A 397 HOH A 755 HOH A 902 HOH A1147 SITE 1 AC6 9 HIS A 283 MET A 311 TRP A 314 GLN A 315 SITE 2 AC6 9 ASN A 324 THR A 325 LEU A 326 TYR A 327 SITE 3 AC6 9 HOH A1311 CRYST1 48.650 100.330 61.360 90.00 112.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020555 0.000000 0.008552 0.00000 SCALE2 0.000000 0.009967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017652 0.00000