HEADER HYDROLASE/HYDROLASE INHIBITOR 14-AUG-13 4M8X TITLE GS-8374, A NOVEL PHOSPHONATE-CONTAINING INHIBITOR OF HIV-1 PROTEASE, TITLE 2 EFFECTIVELY INHIBITS HIV PR MUTANTS WITH AMINO ACID INSERTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.23.16; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS HIV PROTEASE, ASPARTIC PROTEASE, GS8374, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GRANTZ SASKOVA,J.BRYNDA,P.REZACOVA,M.KOZISEK,J.KONVALINKA REVDAT 2 20-SEP-23 4M8X 1 REMARK SEQADV REVDAT 1 07-MAY-14 4M8X 0 JRNL AUTH K.GRANTZ SASKOVA,M.KOZISEK,K.STRAY,D.DE JONG,P.REZAOVA, JRNL AUTH 2 J.BRYNDA,N.M.VAN MAARSEVEEN,M.NIJHUIS,T.CIHLAR,J.KONVALINKA JRNL TITL GS-8374, A PROTOTYPE PHOSPHONATE-CONTAINING INHIBITOR OF JRNL TITL 2 HIV-1 PROTEASE, EFFECTIVELY INHIBITS PROTEASE MUTANTS WITH JRNL TITL 3 AMINO ACID INSERTIONS. JRNL REF J.VIROL. V. 88 3586 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24371077 JRNL DOI 10.1128/JVI.02688-13 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.431 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1685 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1131 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2301 ; 1.695 ; 2.034 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2690 ; 0.923 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 6.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;37.345 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.789 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1769 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 299 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 989 ; 1.056 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 415 ; 0.148 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1616 ; 1.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 696 ; 2.141 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 3.642 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 99 2 REMARK 3 1 B 1 B 99 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 576 ; 0.10 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 713 ; 0.47 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 576 ; 0.26 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 713 ; 0.28 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 101 B 101 4 REMARK 3 1 B 102 B 102 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 82 ; 0.11 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 82 ; 0.38 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 RESIDUE RANGE : A 86 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1170 56.3500 2.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.2872 T22: 0.3184 REMARK 3 T33: 0.0766 T12: -0.0500 REMARK 3 T13: -0.0172 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.9361 L22: 3.1328 REMARK 3 L33: 5.6289 L12: -0.2191 REMARK 3 L13: -0.2005 L23: -0.8737 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0802 S13: 0.1037 REMARK 3 S21: 0.0171 S22: -0.0998 S23: -0.2382 REMARK 3 S31: -0.1000 S32: 0.2858 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 32 REMARK 3 RESIDUE RANGE : A 63 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5060 62.8820 -5.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.3610 REMARK 3 T33: 0.0781 T12: -0.0075 REMARK 3 T13: -0.0261 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 0.4752 L22: 4.4797 REMARK 3 L33: 2.2067 L12: 0.8688 REMARK 3 L13: -0.9545 L23: -1.7483 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0572 S13: 0.1147 REMARK 3 S21: -0.0248 S22: 0.1338 S23: 0.0735 REMARK 3 S31: 0.0261 S32: -0.2146 S33: -0.1555 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5410 58.9520 -10.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.2307 T22: 0.5163 REMARK 3 T33: 0.1333 T12: -0.1702 REMARK 3 T13: -0.1688 T23: 0.2250 REMARK 3 L TENSOR REMARK 3 L11: 7.4817 L22: 4.3864 REMARK 3 L33: 4.5430 L12: 4.7642 REMARK 3 L13: -5.5592 L23: -2.9283 REMARK 3 S TENSOR REMARK 3 S11: -0.5810 S12: 1.1976 S13: 0.8854 REMARK 3 S21: -0.1710 S22: 0.8206 S23: 0.6412 REMARK 3 S31: 0.3778 S32: -0.8155 S33: -0.2397 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 RESIDUE RANGE : B 86 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1280 50.6500 5.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.3065 REMARK 3 T33: 0.0768 T12: 0.0336 REMARK 3 T13: 0.0009 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.7518 L22: 2.5344 REMARK 3 L33: 6.0523 L12: 0.6848 REMARK 3 L13: -0.8691 L23: -1.5276 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1720 S13: -0.0355 REMARK 3 S21: -0.0357 S22: -0.0838 S23: -0.1751 REMARK 3 S31: 0.1517 S32: 0.3276 S33: 0.1027 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 32 REMARK 3 RESIDUE RANGE : B 63 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4990 44.0630 13.2310 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.3406 REMARK 3 T33: 0.0743 T12: -0.0069 REMARK 3 T13: 0.0148 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.6063 L22: 5.2651 REMARK 3 L33: 2.6564 L12: -1.1230 REMARK 3 L13: 0.6913 L23: -1.7247 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: -0.0408 S13: -0.1294 REMARK 3 S21: 0.0207 S22: 0.1364 S23: 0.0383 REMARK 3 S31: -0.0299 S32: -0.2716 S33: -0.1775 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5510 47.9960 18.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.5000 REMARK 3 T33: 0.1516 T12: 0.1282 REMARK 3 T13: 0.1903 T23: 0.2356 REMARK 3 L TENSOR REMARK 3 L11: 8.9188 L22: 5.9165 REMARK 3 L33: 10.5154 L12: -5.1515 REMARK 3 L13: 7.5064 L23: -5.2301 REMARK 3 S TENSOR REMARK 3 S11: -0.3684 S12: -1.2728 S13: -1.1998 REMARK 3 S21: 0.2161 S22: 0.8874 S23: 1.0302 REMARK 3 S31: -0.3614 S32: -0.9116 S33: -0.5190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25-5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10764 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2RKF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM SULPHATE AND 0.1 M REMARK 280 SODIUM ACETATE PH 5.25-5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.78400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.56800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.67600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.46000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.89200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 79 47.47 -66.80 REMARK 500 PRO B 79 43.29 -65.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KGQ B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KGQ B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RKF RELATED DB: PDB REMARK 900 RELATED ID: 2RKG RELATED DB: PDB REMARK 900 RELATED ID: 4M8Y RELATED DB: PDB DBREF 4M8X A 1 99 UNP Q90JJ9 Q90JJ9_9HIV1 1 99 DBREF 4M8X B 1 99 UNP Q90JJ9 Q90JJ9_9HIV1 1 99 SEQADV 4M8X PHE A 10 UNP Q90JJ9 LEU 10 ENGINEERED MUTATION SEQADV 4M8X VAL A 13 UNP Q90JJ9 ILE 13 ENGINEERED MUTATION SEQADV 4M8X ALA A 16 UNP Q90JJ9 GLY 16 ENGINEERED MUTATION SEQADV 4M8X MET A 20 UNP Q90JJ9 LYS 20 ENGINEERED MUTATION SEQADV 4M8X SER A 37 UNP Q90JJ9 ASP 37 ENGINEERED MUTATION SEQADV 4M8X VAL A 46 UNP Q90JJ9 ILE 46 ENGINEERED MUTATION SEQADV 4M8X MET A 54 UNP Q90JJ9 ILE 54 ENGINEERED MUTATION SEQADV 4M8X VAL A 71 UNP Q90JJ9 ALA 71 ENGINEERED MUTATION SEQADV 4M8X PHE B 10 UNP Q90JJ9 LEU 10 ENGINEERED MUTATION SEQADV 4M8X VAL B 13 UNP Q90JJ9 ILE 13 ENGINEERED MUTATION SEQADV 4M8X ALA B 16 UNP Q90JJ9 GLY 16 ENGINEERED MUTATION SEQADV 4M8X MET B 20 UNP Q90JJ9 LYS 20 ENGINEERED MUTATION SEQADV 4M8X SER B 37 UNP Q90JJ9 ASP 37 ENGINEERED MUTATION SEQADV 4M8X VAL B 46 UNP Q90JJ9 ILE 46 ENGINEERED MUTATION SEQADV 4M8X MET B 54 UNP Q90JJ9 ILE 54 ENGINEERED MUTATION SEQADV 4M8X VAL B 71 UNP Q90JJ9 ALA 71 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP GLN ARG PRO PHE VAL THR VAL SEQRES 2 A 99 LYS ILE ALA GLY GLN LEU MET GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASP THR ILE LEU GLU GLU MET SER LEU PRO SEQRES 4 A 99 GLY ARG TRP THR PRO LYS VAL VAL GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE MET LYS VAL ARG GLN TYR ASP GLN ILE LEU VAL GLU SEQRES 6 A 99 ILE CYS GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 99 GLN ILE GLY CYS THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP GLN ARG PRO PHE VAL THR VAL SEQRES 2 B 99 LYS ILE ALA GLY GLN LEU MET GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASP THR ILE LEU GLU GLU MET SER LEU PRO SEQRES 4 B 99 GLY ARG TRP THR PRO LYS VAL VAL GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE MET LYS VAL ARG GLN TYR ASP GLN ILE LEU VAL GLU SEQRES 6 B 99 ILE CYS GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO ALA ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 B 99 GLN ILE GLY CYS THR LEU ASN PHE HET KGQ B 101 49 HET KGQ B 102 49 HETNAM KGQ DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2, HETNAM 2 KGQ 3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4- HETNAM 3 KGQ {ISOBUTYL[(4-METHOXYPHENYL) HETNAM 4 KGQ SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE FORMUL 3 KGQ 2(C33 H49 N2 O12 P S) FORMUL 5 HOH *74(H2 O) HELIX 1 1 GLY A 86 THR A 91 1 6 HELIX 2 2 GLN A 92 GLY A 94 5 3 HELIX 3 3 GLY B 86 THR B 91 1 6 HELIX 4 4 GLN B 92 GLY B 94 5 3 SHEET 1 A 4 GLN A 2 THR A 4 0 SHEET 2 A 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 A 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 A 4 GLN B 2 THR B 4 -1 O ILE B 3 N LEU A 97 SHEET 1 B 8 THR A 43 GLY A 49 0 SHEET 2 B 8 GLY A 52 ILE A 66 -1 O GLY A 52 N GLY A 49 SHEET 3 B 8 HIS A 69 VAL A 77 -1 O VAL A 71 N VAL A 64 SHEET 4 B 8 THR A 31 LEU A 33 1 N LEU A 33 O LEU A 76 SHEET 5 B 8 ILE A 84 ILE A 85 -1 O ILE A 84 N ILE A 32 SHEET 6 B 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 B 8 PHE A 10 ILE A 15 -1 N VAL A 13 O MET A 20 SHEET 8 B 8 GLY A 52 ILE A 66 -1 O GLU A 65 N LYS A 14 SHEET 1 C 8 THR B 43 GLY B 49 0 SHEET 2 C 8 GLY B 52 ILE B 66 -1 O GLY B 52 N GLY B 49 SHEET 3 C 8 HIS B 69 VAL B 77 -1 O GLY B 73 N ILE B 62 SHEET 4 C 8 THR B 31 LEU B 33 1 N LEU B 33 O LEU B 76 SHEET 5 C 8 ILE B 84 ILE B 85 -1 O ILE B 84 N ILE B 32 SHEET 6 C 8 GLN B 18 LEU B 24 1 N LEU B 23 O ILE B 85 SHEET 7 C 8 PHE B 10 ILE B 15 -1 N VAL B 13 O MET B 20 SHEET 8 C 8 GLY B 52 ILE B 66 -1 O GLU B 65 N LYS B 14 CISPEP 1 PRO B 39 GLY B 40 0 -8.18 SITE 1 AC1 25 ARG A 8 ASP A 25 GLY A 27 ALA A 28 SITE 2 AC1 25 ASP A 29 ASP A 30 ILE A 32 GLY A 48 SITE 3 AC1 25 GLY A 49 ILE A 50 HOH A 122 ASP B 25 SITE 4 AC1 25 GLY B 27 ALA B 28 ASP B 29 ASP B 30 SITE 5 AC1 25 ILE B 32 VAL B 46 GLY B 48 GLY B 49 SITE 6 AC1 25 ILE B 50 PRO B 81 ILE B 84 HOH B 226 SITE 7 AC1 25 HOH B 246 SITE 1 AC2 23 ASP A 25 GLY A 27 ALA A 28 ASP A 30 SITE 2 AC2 23 VAL A 46 GLY A 48 GLY A 49 PRO A 81 SITE 3 AC2 23 ILE A 84 HOH A 122 LEU B 23 ASP B 25 SITE 4 AC2 23 GLY B 27 ALA B 28 ASP B 29 ASP B 30 SITE 5 AC2 23 ILE B 32 GLY B 48 GLY B 49 ILE B 50 SITE 6 AC2 23 PHE B 53 HOH B 226 HOH B 247 CRYST1 61.756 61.756 83.352 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016193 0.009349 0.000000 0.00000 SCALE2 0.000000 0.018698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011997 0.00000