data_4M9E # _entry.id 4M9E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4M9E pdb_00004m9e 10.2210/pdb4m9e/pdb NDB NA2696 ? ? RCSB RCSB081631 ? ? WWPDB D_1000081631 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4M9E _pdbx_database_status.recvd_initial_deposition_date 2013-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Olanrewaju, Y.O.' 2 'Blumenthal, R.M.' 3 'Zhang, X.' 4 'Cheng, X.' 5 # _citation.id primary _citation.title 'Structural basis for Klf4 recognition of methylated DNA.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 4859 _citation.page_last 4867 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24520114 _citation.pdbx_database_id_DOI 10.1093/nar/gku134 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Olanrewaju, Y.O.' 2 ? primary 'Zheng, Y.' 3 ? primary 'Hashimoto, H.' 4 ? primary 'Blumenthal, R.M.' 5 ? primary 'Zhang, X.' 6 ? primary 'Cheng, X.' 7 ? # _cell.entry_id 4M9E _cell.length_a 48.705 _cell.length_b 48.705 _cell.length_c 131.015 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4M9E _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Krueppel-like factor 4' 10428.806 1 ? ? 'UNP residues 396-483' ? 2 polymer syn ;DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3') ; 3140.067 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3') ; 2979.972 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 7 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Epithelial zinc finger protein EZF, Gut-enriched krueppel-like factor' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL ALHMKRHF ; ;RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL ALHMKRHF ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DA)(DG)(DG)(5CM)(DG)(DT)(DG)(DG)(DC)' GAGGCGTGGC B ? 3 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(5CM)(DG)(DC)(DC)(DT)(DC)' GCCACGCCTC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 THR n 1 3 ALA n 1 4 THR n 1 5 HIS n 1 6 THR n 1 7 CYS n 1 8 ASP n 1 9 TYR n 1 10 ALA n 1 11 GLY n 1 12 CYS n 1 13 GLY n 1 14 LYS n 1 15 THR n 1 16 TYR n 1 17 THR n 1 18 LYS n 1 19 SER n 1 20 SER n 1 21 HIS n 1 22 LEU n 1 23 LYS n 1 24 ALA n 1 25 HIS n 1 26 LEU n 1 27 ARG n 1 28 THR n 1 29 HIS n 1 30 THR n 1 31 GLY n 1 32 GLU n 1 33 LYS n 1 34 PRO n 1 35 TYR n 1 36 HIS n 1 37 CYS n 1 38 ASP n 1 39 TRP n 1 40 ASP n 1 41 GLY n 1 42 CYS n 1 43 GLY n 1 44 TRP n 1 45 LYS n 1 46 PHE n 1 47 ALA n 1 48 ARG n 1 49 SER n 1 50 ASP n 1 51 GLU n 1 52 LEU n 1 53 THR n 1 54 ARG n 1 55 HIS n 1 56 TYR n 1 57 ARG n 1 58 LYS n 1 59 HIS n 1 60 THR n 1 61 GLY n 1 62 HIS n 1 63 ARG n 1 64 PRO n 1 65 PHE n 1 66 GLN n 1 67 CYS n 1 68 GLN n 1 69 LYS n 1 70 CYS n 1 71 ASP n 1 72 ARG n 1 73 ALA n 1 74 PHE n 1 75 SER n 1 76 ARG n 1 77 SER n 1 78 ASP n 1 79 HIS n 1 80 LEU n 1 81 ALA n 1 82 LEU n 1 83 HIS n 1 84 MET n 1 85 LYS n 1 86 ARG n 1 87 HIS n 1 88 PHE n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 5CM n 2 6 DG n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DC n 3 1 DG n 3 2 DC n 3 3 DC n 3 4 DA n 3 5 5CM n 3 6 DG n 3 7 DC n 3 8 DC n 3 9 DT n 3 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Klf4, Ezf, Gklf, Zie' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pXC1248 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA synthesis' 3 1 sample ? ? ? ? ? 'DNA synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP KLF4_MOUSE Q60793 1 ;RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL ALHMKRHF ; 396 ? 2 PDB 4M9E 4M9E 2 GAGGCGTGGC ? ? 3 PDB 4M9E 4M9E 3 GCCACGCCTC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M9E A 1 ? 88 ? Q60793 396 ? 483 ? 396 483 2 2 4M9E B 1 ? 10 ? 4M9E 1 ? 10 ? 1 10 3 3 4M9E C 1 ? 10 ? 4M9E 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4M9E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, 0.25M NaCl and 20% polyethylene glycol 8000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-04-03 _diffrn_detector.details ;Rosenbaum-Rock double-crystal monochromator: liquid nitrogen cooled; sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal - liqued nitrogen cooled' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4M9E _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 70 _reflns.d_resolution_high 1.85 _reflns.number_obs 13918 _reflns.number_all ? _reflns.percent_possible_obs 97.7 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.5 _reflns.B_iso_Wilson_estimate 26.42 _reflns.pdbx_redundancy 12.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 80.4 _reflns_shell.Rmerge_I_obs 0.501 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1103 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4M9E _refine.ls_number_reflns_obs 13843 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.440 _refine.ls_d_res_high 1.851 _refine.ls_percent_reflns_obs 97.63 _refine.ls_R_factor_obs 0.1889 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1868 _refine.ls_R_factor_R_free 0.2339 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.98 _refine.ls_number_reflns_R_free 689 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 21.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2WBU' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'FLAT BULK SOLVENT MODEL' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.pdbx_overall_phase_error 20.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 694 _refine_hist.pdbx_number_atoms_nucleic_acid 406 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 1247 _refine_hist.d_res_high 1.851 _refine_hist.d_res_low 34.440 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.006 ? ? 1230 ? 'X-RAY DIFFRACTION' f_angle_d 1.313 ? ? 1753 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 26.221 ? ? 512 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.063 ? ? 166 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 147 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.8510 1.9939 2296 0.2345 89.00 0.2768 . . 136 . . 2296 . 'X-RAY DIFFRACTION' . 1.9939 2.1946 2638 0.1978 100.00 0.2477 . . 133 . . 2638 . 'X-RAY DIFFRACTION' . 2.1946 2.5120 2651 0.1940 100.00 0.2297 . . 146 . . 2651 . 'X-RAY DIFFRACTION' . 2.5120 3.1645 2697 0.2094 100.00 0.3047 . . 143 . . 2697 . 'X-RAY DIFFRACTION' . 3.1645 34.4456 2872 0.1648 99.00 0.1873 . . 131 . . 2872 . 'X-RAY DIFFRACTION' # _struct.entry_id 4M9E _struct.title 'Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M9E _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'DNA methylation, transcription factor, cellular reprogramming, C2H2 Zinc finger, DNA binding, TRANSCRIPTION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 18 ? GLY A 31 ? LYS A 413 GLY A 426 1 ? 14 HELX_P HELX_P2 2 ARG A 48 ? GLY A 61 ? ARG A 443 GLY A 456 1 ? 14 HELX_P HELX_P3 3 ARG A 76 ? ARG A 86 ? ARG A 471 ARG A 481 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DG 4 B 5CM 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? C DA 4 "O3'" A ? ? 1_555 C 5CM 5 P A ? C DA 4 C 5CM 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? C DA 4 "O3'" B ? ? 1_555 C 5CM 5 P B ? C DA 4 C 5CM 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale both ? C 5CM 5 "O3'" A ? ? 1_555 C DG 6 P ? ? C 5CM 5 C DG 6 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale6 covale both ? C 5CM 5 "O3'" B ? ? 1_555 C DG 6 P ? ? C 5CM 5 C DG 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? A CYS 7 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 402 A ZN 505 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc2 metalc ? ? A CYS 12 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 407 A ZN 505 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc3 metalc ? ? A HIS 25 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 420 A ZN 505 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc4 metalc ? ? A HIS 29 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 424 A ZN 505 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc5 metalc ? ? A CYS 37 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 432 A ZN 504 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc6 metalc ? ? A CYS 42 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 437 A ZN 504 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc7 metalc ? ? A HIS 55 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 450 A ZN 504 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc8 metalc ? ? A HIS 59 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 454 A ZN 504 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc9 metalc ? ? A CYS 67 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 462 A ZN 503 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc10 metalc ? ? A CYS 70 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 465 A ZN 503 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc11 metalc ? ? A HIS 83 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 478 A ZN 503 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc12 metalc ? ? A HIS 87 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 482 A ZN 503 1_555 ? ? ? ? ? ? ? 2.026 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B 5CM 5 N3 ? ? ? 1_555 C DG 6 N1 ? ? B 5CM 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B 5CM 5 N4 ? ? ? 1_555 C DG 6 O6 ? ? B 5CM 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B 5CM 5 O2 ? ? ? 1_555 C DG 6 N2 ? ? B 5CM 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C 5CM 5 N3 ? ? B DG 6 C 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C 5CM 5 O2 ? ? B DG 6 C 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C 5CM 5 N4 A ? B DG 6 C 5CM 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 4 N1 A ? B DT 7 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 4 N6 A ? B DT 7 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 5 ? THR A 6 ? HIS A 400 THR A 401 A 2 THR A 15 ? TYR A 16 ? THR A 410 TYR A 411 B 1 TYR A 35 ? HIS A 36 ? TYR A 430 HIS A 431 B 2 LYS A 45 ? PHE A 46 ? LYS A 440 PHE A 441 C 1 PHE A 65 ? GLN A 66 ? PHE A 460 GLN A 461 C 2 ALA A 73 ? PHE A 74 ? ALA A 468 PHE A 469 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 5 ? N HIS A 400 O TYR A 16 ? O TYR A 411 B 1 2 N TYR A 35 ? N TYR A 430 O PHE A 46 ? O PHE A 441 C 1 2 N PHE A 65 ? N PHE A 460 O PHE A 74 ? O PHE A 469 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 501 ? 6 'BINDING SITE FOR RESIDUE GOL A 501' AC2 Software A ACT 502 ? 4 'BINDING SITE FOR RESIDUE ACT A 502' AC3 Software A ZN 503 ? 4 'BINDING SITE FOR RESIDUE ZN A 503' AC4 Software A ZN 504 ? 4 'BINDING SITE FOR RESIDUE ZN A 504' AC5 Software A ZN 505 ? 4 'BINDING SITE FOR RESIDUE ZN A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 THR A 53 ? THR A 448 . ? 1_555 ? 2 AC1 6 ARG A 57 ? ARG A 452 . ? 1_555 ? 3 AC1 6 THR A 60 ? THR A 455 . ? 1_555 ? 4 AC1 6 HIS A 62 ? HIS A 457 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 665 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 668 . ? 1_555 ? 7 AC2 4 ARG A 57 ? ARG A 452 . ? 1_555 ? 8 AC2 4 HOH I . ? HOH A 603 . ? 1_555 ? 9 AC2 4 HOH I . ? HOH A 652 . ? 1_555 ? 10 AC2 4 DA C 4 ? DA C 4 . ? 1_555 ? 11 AC3 4 CYS A 67 ? CYS A 462 . ? 1_555 ? 12 AC3 4 CYS A 70 ? CYS A 465 . ? 1_555 ? 13 AC3 4 HIS A 83 ? HIS A 478 . ? 1_555 ? 14 AC3 4 HIS A 87 ? HIS A 482 . ? 1_555 ? 15 AC4 4 CYS A 37 ? CYS A 432 . ? 1_555 ? 16 AC4 4 CYS A 42 ? CYS A 437 . ? 1_555 ? 17 AC4 4 HIS A 55 ? HIS A 450 . ? 1_555 ? 18 AC4 4 HIS A 59 ? HIS A 454 . ? 1_555 ? 19 AC5 4 CYS A 7 ? CYS A 402 . ? 1_555 ? 20 AC5 4 CYS A 12 ? CYS A 407 . ? 1_555 ? 21 AC5 4 HIS A 25 ? HIS A 420 . ? 1_555 ? 22 AC5 4 HIS A 29 ? HIS A 424 . ? 1_555 ? # _database_PDB_matrix.entry_id 4M9E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4M9E _atom_sites.fract_transf_matrix[1][1] 0.020532 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020532 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007633 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 396 ? ? ? A . n A 1 2 THR 2 397 ? ? ? A . n A 1 3 ALA 3 398 ? ? ? A . n A 1 4 THR 4 399 399 THR THR A . n A 1 5 HIS 5 400 400 HIS HIS A . n A 1 6 THR 6 401 401 THR THR A . n A 1 7 CYS 7 402 402 CYS CYS A . n A 1 8 ASP 8 403 403 ASP ASP A . n A 1 9 TYR 9 404 404 TYR TYR A . n A 1 10 ALA 10 405 405 ALA ALA A . n A 1 11 GLY 11 406 406 GLY GLY A . n A 1 12 CYS 12 407 407 CYS CYS A . n A 1 13 GLY 13 408 408 GLY GLY A . n A 1 14 LYS 14 409 409 LYS LYS A . n A 1 15 THR 15 410 410 THR THR A . n A 1 16 TYR 16 411 411 TYR TYR A . n A 1 17 THR 17 412 412 THR THR A . n A 1 18 LYS 18 413 413 LYS LYS A . n A 1 19 SER 19 414 414 SER SER A . n A 1 20 SER 20 415 415 SER SER A . n A 1 21 HIS 21 416 416 HIS HIS A . n A 1 22 LEU 22 417 417 LEU LEU A . n A 1 23 LYS 23 418 418 LYS LYS A . n A 1 24 ALA 24 419 419 ALA ALA A . n A 1 25 HIS 25 420 420 HIS HIS A . n A 1 26 LEU 26 421 421 LEU LEU A . n A 1 27 ARG 27 422 422 ARG ARG A . n A 1 28 THR 28 423 423 THR THR A . n A 1 29 HIS 29 424 424 HIS HIS A . n A 1 30 THR 30 425 425 THR THR A . n A 1 31 GLY 31 426 426 GLY GLY A . n A 1 32 GLU 32 427 427 GLU GLU A . n A 1 33 LYS 33 428 428 LYS LYS A . n A 1 34 PRO 34 429 429 PRO PRO A . n A 1 35 TYR 35 430 430 TYR TYR A . n A 1 36 HIS 36 431 431 HIS HIS A . n A 1 37 CYS 37 432 432 CYS CYS A . n A 1 38 ASP 38 433 433 ASP ASP A . n A 1 39 TRP 39 434 434 TRP TRP A . n A 1 40 ASP 40 435 435 ASP ASP A . n A 1 41 GLY 41 436 436 GLY GLY A . n A 1 42 CYS 42 437 437 CYS CYS A . n A 1 43 GLY 43 438 438 GLY GLY A . n A 1 44 TRP 44 439 439 TRP TRP A . n A 1 45 LYS 45 440 440 LYS LYS A . n A 1 46 PHE 46 441 441 PHE PHE A . n A 1 47 ALA 47 442 442 ALA ALA A . n A 1 48 ARG 48 443 443 ARG ARG A . n A 1 49 SER 49 444 444 SER SER A . n A 1 50 ASP 50 445 445 ASP ASP A . n A 1 51 GLU 51 446 446 GLU GLU A . n A 1 52 LEU 52 447 447 LEU LEU A . n A 1 53 THR 53 448 448 THR THR A . n A 1 54 ARG 54 449 449 ARG ARG A . n A 1 55 HIS 55 450 450 HIS HIS A . n A 1 56 TYR 56 451 451 TYR TYR A . n A 1 57 ARG 57 452 452 ARG ARG A . n A 1 58 LYS 58 453 453 LYS LYS A . n A 1 59 HIS 59 454 454 HIS HIS A . n A 1 60 THR 60 455 455 THR THR A . n A 1 61 GLY 61 456 456 GLY GLY A . n A 1 62 HIS 62 457 457 HIS HIS A . n A 1 63 ARG 63 458 458 ARG ARG A . n A 1 64 PRO 64 459 459 PRO PRO A . n A 1 65 PHE 65 460 460 PHE PHE A . n A 1 66 GLN 66 461 461 GLN GLN A . n A 1 67 CYS 67 462 462 CYS CYS A . n A 1 68 GLN 68 463 463 GLN GLN A . n A 1 69 LYS 69 464 464 LYS LYS A . n A 1 70 CYS 70 465 465 CYS CYS A . n A 1 71 ASP 71 466 466 ASP ASP A . n A 1 72 ARG 72 467 467 ARG ARG A . n A 1 73 ALA 73 468 468 ALA ALA A . n A 1 74 PHE 74 469 469 PHE PHE A . n A 1 75 SER 75 470 470 SER SER A . n A 1 76 ARG 76 471 471 ARG ARG A . n A 1 77 SER 77 472 472 SER SER A . n A 1 78 ASP 78 473 473 ASP ASP A . n A 1 79 HIS 79 474 474 HIS HIS A . n A 1 80 LEU 80 475 475 LEU LEU A . n A 1 81 ALA 81 476 476 ALA ALA A . n A 1 82 LEU 82 477 477 LEU LEU A . n A 1 83 HIS 83 478 478 HIS HIS A . n A 1 84 MET 84 479 479 MET MET A . n A 1 85 LYS 85 480 480 LYS LYS A . n A 1 86 ARG 86 481 481 ARG ARG A . n A 1 87 HIS 87 482 482 HIS HIS A . n A 1 88 PHE 88 483 483 PHE PHE A . n B 2 1 DG 1 1 1 DG GD B . n B 2 2 DA 2 2 2 DA AD B . n B 2 3 DG 3 3 3 DG GD B . n B 2 4 DG 4 4 4 DG GD B . n B 2 5 5CM 5 5 5 5CM 5CM B . n B 2 6 DG 6 6 6 DG GD B . n B 2 7 DT 7 7 7 DT TD B . n B 2 8 DG 8 8 8 DG GD B . n B 2 9 DG 9 9 9 DG GD B . n B 2 10 DC 10 10 10 DC CD B . n C 3 1 DG 1 1 1 DG GD C . n C 3 2 DC 2 2 2 DC CD C . n C 3 3 DC 3 3 3 DC CD C . n C 3 4 DA 4 4 4 DA AD C . n C 3 5 5CM 5 5 5 5CM 5CM C . n C 3 6 DG 6 6 6 DG GD C . n C 3 7 DC 7 7 7 DC CD C . n C 3 8 DC 8 8 8 DC CD C . n C 3 9 DT 9 9 9 DT TD C . n C 3 10 DC 10 10 10 DC CD C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 501 1 GOL GOL A . E 5 ACT 1 502 1 ACT ACT A . F 6 ZN 1 503 1484 ZN ZN A . G 6 ZN 1 504 1485 ZN ZN A . H 6 ZN 1 505 1486 ZN ZN A . I 7 HOH 1 601 1 HOH HOH A . I 7 HOH 2 602 2 HOH HOH A . I 7 HOH 3 603 3 HOH HOH A . I 7 HOH 4 604 4 HOH HOH A . I 7 HOH 5 605 5 HOH HOH A . I 7 HOH 6 606 7 HOH HOH A . I 7 HOH 7 607 8 HOH HOH A . I 7 HOH 8 608 9 HOH HOH A . I 7 HOH 9 609 11 HOH HOH A . I 7 HOH 10 610 12 HOH HOH A . I 7 HOH 11 611 14 HOH HOH A . I 7 HOH 12 612 16 HOH HOH A . I 7 HOH 13 613 17 HOH HOH A . I 7 HOH 14 614 20 HOH HOH A . I 7 HOH 15 615 21 HOH HOH A . I 7 HOH 16 616 22 HOH HOH A . I 7 HOH 17 617 23 HOH HOH A . I 7 HOH 18 618 26 HOH HOH A . I 7 HOH 19 619 27 HOH HOH A . I 7 HOH 20 620 28 HOH HOH A . I 7 HOH 21 621 29 HOH HOH A . I 7 HOH 22 622 32 HOH HOH A . I 7 HOH 23 623 34 HOH HOH A . I 7 HOH 24 624 37 HOH HOH A . I 7 HOH 25 625 39 HOH HOH A . I 7 HOH 26 626 46 HOH HOH A . I 7 HOH 27 627 50 HOH HOH A . I 7 HOH 28 628 51 HOH HOH A . I 7 HOH 29 629 52 HOH HOH A . I 7 HOH 30 630 55 HOH HOH A . I 7 HOH 31 631 56 HOH HOH A . I 7 HOH 32 632 58 HOH HOH A . I 7 HOH 33 633 59 HOH HOH A . I 7 HOH 34 634 63 HOH HOH A . I 7 HOH 35 635 65 HOH HOH A . I 7 HOH 36 636 67 HOH HOH A . I 7 HOH 37 637 68 HOH HOH A . I 7 HOH 38 638 69 HOH HOH A . I 7 HOH 39 639 71 HOH HOH A . I 7 HOH 40 640 72 HOH HOH A . I 7 HOH 41 641 77 HOH HOH A . I 7 HOH 42 642 87 HOH HOH A . I 7 HOH 43 643 90 HOH HOH A . I 7 HOH 44 644 91 HOH HOH A . I 7 HOH 45 645 93 HOH HOH A . I 7 HOH 46 646 104 HOH HOH A . I 7 HOH 47 647 127 HOH HOH A . I 7 HOH 48 648 134 HOH HOH A . I 7 HOH 49 649 137 HOH HOH A . I 7 HOH 50 650 141 HOH HOH A . I 7 HOH 51 651 142 HOH HOH A . I 7 HOH 52 652 155 HOH HOH A . I 7 HOH 53 653 248 HOH HOH A . I 7 HOH 54 654 1 HOH HOH A . I 7 HOH 55 655 2 HOH HOH A . I 7 HOH 56 656 3 HOH HOH A . I 7 HOH 57 657 4 HOH HOH A . I 7 HOH 58 658 5 HOH HOH A . I 7 HOH 59 659 7 HOH HOH A . I 7 HOH 60 660 8 HOH HOH A . I 7 HOH 61 661 10 HOH HOH A . I 7 HOH 62 662 11 HOH HOH A . I 7 HOH 63 663 12 HOH HOH A . I 7 HOH 64 664 13 HOH HOH A . I 7 HOH 65 665 17 HOH HOH A . I 7 HOH 66 666 18 HOH HOH A . I 7 HOH 67 667 20 HOH HOH A . I 7 HOH 68 668 1 HOH HOH A . I 7 HOH 69 669 2 HOH HOH A . I 7 HOH 70 670 6 HOH HOH A . I 7 HOH 71 671 8 HOH HOH A . I 7 HOH 72 672 10 HOH HOH A . I 7 HOH 73 673 11 HOH HOH A . I 7 HOH 74 674 12 HOH HOH A . I 7 HOH 75 675 44 HOH HOH A . J 7 HOH 1 101 6 HOH HOH B . J 7 HOH 2 102 10 HOH HOH B . J 7 HOH 3 103 15 HOH HOH B . J 7 HOH 4 104 18 HOH HOH B . J 7 HOH 5 105 24 HOH HOH B . J 7 HOH 6 106 25 HOH HOH B . J 7 HOH 7 107 30 HOH HOH B . J 7 HOH 8 108 31 HOH HOH B . J 7 HOH 9 109 38 HOH HOH B . J 7 HOH 10 110 54 HOH HOH B . J 7 HOH 11 111 57 HOH HOH B . J 7 HOH 12 112 60 HOH HOH B . J 7 HOH 13 113 61 HOH HOH B . J 7 HOH 14 114 64 HOH HOH B . J 7 HOH 15 115 74 HOH HOH B . J 7 HOH 16 116 75 HOH HOH B . J 7 HOH 17 117 80 HOH HOH B . J 7 HOH 18 118 88 HOH HOH B . J 7 HOH 19 119 95 HOH HOH B . J 7 HOH 20 120 96 HOH HOH B . J 7 HOH 21 121 98 HOH HOH B . J 7 HOH 22 122 101 HOH HOH B . J 7 HOH 23 123 109 HOH HOH B . J 7 HOH 24 124 115 HOH HOH B . J 7 HOH 25 125 119 HOH HOH B . J 7 HOH 26 126 132 HOH HOH B . J 7 HOH 27 127 156 HOH HOH B . J 7 HOH 28 128 258 HOH HOH B . J 7 HOH 29 129 260 HOH HOH B . J 7 HOH 30 130 6 HOH HOH B . J 7 HOH 31 131 9 HOH HOH B . J 7 HOH 32 132 22 HOH HOH B . J 7 HOH 33 133 3 HOH HOH B . J 7 HOH 34 134 4 HOH HOH B . J 7 HOH 35 135 14 HOH HOH B . K 7 HOH 1 101 19 HOH HOH C . K 7 HOH 2 102 35 HOH HOH C . K 7 HOH 3 103 36 HOH HOH C . K 7 HOH 4 104 45 HOH HOH C . K 7 HOH 5 105 53 HOH HOH C . K 7 HOH 6 106 62 HOH HOH C . K 7 HOH 7 107 73 HOH HOH C . K 7 HOH 8 108 78 HOH HOH C . K 7 HOH 9 109 79 HOH HOH C . K 7 HOH 10 110 81 HOH HOH C . K 7 HOH 11 111 82 HOH HOH C . K 7 HOH 12 112 84 HOH HOH C . K 7 HOH 13 113 85 HOH HOH C . K 7 HOH 14 114 89 HOH HOH C . K 7 HOH 15 115 111 HOH HOH C . K 7 HOH 16 116 125 HOH HOH C . K 7 HOH 17 117 133 HOH HOH C . K 7 HOH 18 118 153 HOH HOH C . K 7 HOH 19 119 252 HOH HOH C . K 7 HOH 20 120 14 HOH HOH C . K 7 HOH 21 121 5 HOH HOH C . K 7 HOH 22 122 7 HOH HOH C . K 7 HOH 23 123 9 HOH HOH C . K 7 HOH 24 124 13 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5CM 5 B 5CM 5 ? DC ? 2 C 5CM 5 C 5CM 5 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4880 ? 1 MORE -5 ? 1 'SSA (A^2)' 7710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 7 ? A CYS 402 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 SG ? A CYS 12 ? A CYS 407 ? 1_555 113.5 ? 2 SG ? A CYS 7 ? A CYS 402 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 NE2 ? A HIS 25 ? A HIS 420 ? 1_555 109.2 ? 3 SG ? A CYS 12 ? A CYS 407 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 NE2 ? A HIS 25 ? A HIS 420 ? 1_555 108.4 ? 4 SG ? A CYS 7 ? A CYS 402 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 NE2 ? A HIS 29 ? A HIS 424 ? 1_555 108.0 ? 5 SG ? A CYS 12 ? A CYS 407 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 NE2 ? A HIS 29 ? A HIS 424 ? 1_555 112.4 ? 6 NE2 ? A HIS 25 ? A HIS 420 ? 1_555 ZN ? H ZN . ? A ZN 505 ? 1_555 NE2 ? A HIS 29 ? A HIS 424 ? 1_555 104.9 ? 7 SG ? A CYS 37 ? A CYS 432 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 SG ? A CYS 42 ? A CYS 437 ? 1_555 118.7 ? 8 SG ? A CYS 37 ? A CYS 432 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 NE2 ? A HIS 55 ? A HIS 450 ? 1_555 108.9 ? 9 SG ? A CYS 42 ? A CYS 437 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 NE2 ? A HIS 55 ? A HIS 450 ? 1_555 108.3 ? 10 SG ? A CYS 37 ? A CYS 432 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 NE2 ? A HIS 59 ? A HIS 454 ? 1_555 111.8 ? 11 SG ? A CYS 42 ? A CYS 437 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 NE2 ? A HIS 59 ? A HIS 454 ? 1_555 109.6 ? 12 NE2 ? A HIS 55 ? A HIS 450 ? 1_555 ZN ? G ZN . ? A ZN 504 ? 1_555 NE2 ? A HIS 59 ? A HIS 454 ? 1_555 97.3 ? 13 SG ? A CYS 67 ? A CYS 462 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 70 ? A CYS 465 ? 1_555 121.2 ? 14 SG ? A CYS 67 ? A CYS 462 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 83 ? A HIS 478 ? 1_555 107.2 ? 15 SG ? A CYS 70 ? A CYS 465 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 83 ? A HIS 478 ? 1_555 102.0 ? 16 SG ? A CYS 67 ? A CYS 462 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 87 ? A HIS 482 ? 1_555 108.2 ? 17 SG ? A CYS 70 ? A CYS 465 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 87 ? A HIS 482 ? 1_555 115.8 ? 18 NE2 ? A HIS 83 ? A HIS 478 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 87 ? A HIS 482 ? 1_555 99.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-12 2 'Structure model' 1 1 2014-03-19 3 'Structure model' 1 2 2014-05-21 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 53.3137 _pdbx_refine_tls.origin_y 72.2660 _pdbx_refine_tls.origin_z 141.9154 _pdbx_refine_tls.T[1][1] 0.1230 _pdbx_refine_tls.T[2][2] 0.1368 _pdbx_refine_tls.T[3][3] 0.0927 _pdbx_refine_tls.T[1][2] -0.0184 _pdbx_refine_tls.T[1][3] 0.0158 _pdbx_refine_tls.T[2][3] 0.0155 _pdbx_refine_tls.L[1][1] 1.5052 _pdbx_refine_tls.L[2][2] 1.6636 _pdbx_refine_tls.L[3][3] 1.1247 _pdbx_refine_tls.L[1][2] -0.8003 _pdbx_refine_tls.L[1][3] -0.2145 _pdbx_refine_tls.L[2][3] 0.7061 _pdbx_refine_tls.S[1][1] 0.0111 _pdbx_refine_tls.S[1][2] 0.0839 _pdbx_refine_tls.S[1][3] 0.0685 _pdbx_refine_tls.S[2][1] 0.0487 _pdbx_refine_tls.S[2][2] 0.0233 _pdbx_refine_tls.S[2][3] -0.0075 _pdbx_refine_tls.S[3][1] 0.0555 _pdbx_refine_tls.S[3][2] -0.1108 _pdbx_refine_tls.S[3][3] -0.0315 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 638 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 126 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 103.37 108.00 -4.63 0.70 N 2 1 N1 B DT 7 ? ? "C1'" B DT 7 ? ? "C2'" B DT 7 ? ? 123.08 114.30 8.78 1.40 N 3 1 "O4'" B DC 10 ? ? "C4'" B DC 10 ? ? "C3'" B DC 10 ? ? 101.93 104.50 -2.57 0.40 N 4 1 "C3'" C DA 4 ? A "C2'" C DA 4 ? A "C1'" C DA 4 ? A 97.37 102.40 -5.03 0.80 N 5 1 "O4'" C DA 4 ? A "C1'" C DA 4 ? A N9 C DA 4 ? A 112.92 108.30 4.62 0.30 N 6 1 "C1'" C DG 6 ? ? "O4'" C DG 6 ? ? "C4'" C DG 6 ? ? 103.92 110.10 -6.18 1.00 N 7 1 "C3'" C DG 6 ? ? "C2'" C DG 6 ? ? "C1'" C DG 6 ? ? 97.23 102.40 -5.17 0.80 N 8 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 115.81 108.30 7.51 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 405 ? ? 46.15 -136.32 2 1 CYS A 407 ? ? -116.25 -75.09 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 453 ? CE ? A LYS 58 CE 2 1 Y 1 A LYS 453 ? NZ ? A LYS 58 NZ 3 1 Y 1 A ARG 458 ? NE ? A ARG 63 NE 4 1 Y 1 A ARG 458 ? CZ ? A ARG 63 CZ 5 1 Y 1 A ARG 458 ? NH1 ? A ARG 63 NH1 6 1 Y 1 A ARG 458 ? NH2 ? A ARG 63 NH2 7 1 Y 1 A LYS 480 ? CE ? A LYS 85 CE 8 1 Y 1 A LYS 480 ? NZ ? A LYS 85 NZ 9 1 Y 1 A ARG 481 ? CG ? A ARG 86 CG 10 1 Y 1 A ARG 481 ? CD ? A ARG 86 CD 11 1 Y 1 A ARG 481 ? NE ? A ARG 86 NE 12 1 Y 1 A ARG 481 ? CZ ? A ARG 86 CZ 13 1 Y 1 A ARG 481 ? NH1 ? A ARG 86 NH1 14 1 Y 1 A ARG 481 ? NH2 ? A ARG 86 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 396 ? A ARG 1 2 1 Y 1 A THR 397 ? A THR 2 3 1 Y 1 A ALA 398 ? A ALA 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASP N N N N 85 ASP CA C N S 86 ASP C C N N 87 ASP O O N N 88 ASP CB C N N 89 ASP CG C N N 90 ASP OD1 O N N 91 ASP OD2 O N N 92 ASP OXT O N N 93 ASP H H N N 94 ASP H2 H N N 95 ASP HA H N N 96 ASP HB2 H N N 97 ASP HB3 H N N 98 ASP HD2 H N N 99 ASP HXT H N N 100 CYS N N N N 101 CYS CA C N R 102 CYS C C N N 103 CYS O O N N 104 CYS CB C N N 105 CYS SG S N N 106 CYS OXT O N N 107 CYS H H N N 108 CYS H2 H N N 109 CYS HA H N N 110 CYS HB2 H N N 111 CYS HB3 H N N 112 CYS HG H N N 113 CYS HXT H N N 114 DA OP3 O N N 115 DA P P N N 116 DA OP1 O N N 117 DA OP2 O N N 118 DA "O5'" O N N 119 DA "C5'" C N N 120 DA "C4'" C N R 121 DA "O4'" O N N 122 DA "C3'" C N S 123 DA "O3'" O N N 124 DA "C2'" C N N 125 DA "C1'" C N R 126 DA N9 N Y N 127 DA C8 C Y N 128 DA N7 N Y N 129 DA C5 C Y N 130 DA C6 C Y N 131 DA N6 N N N 132 DA N1 N Y N 133 DA C2 C Y N 134 DA N3 N Y N 135 DA C4 C Y N 136 DA HOP3 H N N 137 DA HOP2 H N N 138 DA "H5'" H N N 139 DA "H5''" H N N 140 DA "H4'" H N N 141 DA "H3'" H N N 142 DA "HO3'" H N N 143 DA "H2'" H N N 144 DA "H2''" H N N 145 DA "H1'" H N N 146 DA H8 H N N 147 DA H61 H N N 148 DA H62 H N N 149 DA H2 H N N 150 DC OP3 O N N 151 DC P P N N 152 DC OP1 O N N 153 DC OP2 O N N 154 DC "O5'" O N N 155 DC "C5'" C N N 156 DC "C4'" C N R 157 DC "O4'" O N N 158 DC "C3'" C N S 159 DC "O3'" O N N 160 DC "C2'" C N N 161 DC "C1'" C N R 162 DC N1 N N N 163 DC C2 C N N 164 DC O2 O N N 165 DC N3 N N N 166 DC C4 C N N 167 DC N4 N N N 168 DC C5 C N N 169 DC C6 C N N 170 DC HOP3 H N N 171 DC HOP2 H N N 172 DC "H5'" H N N 173 DC "H5''" H N N 174 DC "H4'" H N N 175 DC "H3'" H N N 176 DC "HO3'" H N N 177 DC "H2'" H N N 178 DC "H2''" H N N 179 DC "H1'" H N N 180 DC H41 H N N 181 DC H42 H N N 182 DC H5 H N N 183 DC H6 H N N 184 DG OP3 O N N 185 DG P P N N 186 DG OP1 O N N 187 DG OP2 O N N 188 DG "O5'" O N N 189 DG "C5'" C N N 190 DG "C4'" C N R 191 DG "O4'" O N N 192 DG "C3'" C N S 193 DG "O3'" O N N 194 DG "C2'" C N N 195 DG "C1'" C N R 196 DG N9 N Y N 197 DG C8 C Y N 198 DG N7 N Y N 199 DG C5 C Y N 200 DG C6 C N N 201 DG O6 O N N 202 DG N1 N N N 203 DG C2 C N N 204 DG N2 N N N 205 DG N3 N N N 206 DG C4 C Y N 207 DG HOP3 H N N 208 DG HOP2 H N N 209 DG "H5'" H N N 210 DG "H5''" H N N 211 DG "H4'" H N N 212 DG "H3'" H N N 213 DG "HO3'" H N N 214 DG "H2'" H N N 215 DG "H2''" H N N 216 DG "H1'" H N N 217 DG H8 H N N 218 DG H1 H N N 219 DG H21 H N N 220 DG H22 H N N 221 DT OP3 O N N 222 DT P P N N 223 DT OP1 O N N 224 DT OP2 O N N 225 DT "O5'" O N N 226 DT "C5'" C N N 227 DT "C4'" C N R 228 DT "O4'" O N N 229 DT "C3'" C N S 230 DT "O3'" O N N 231 DT "C2'" C N N 232 DT "C1'" C N R 233 DT N1 N N N 234 DT C2 C N N 235 DT O2 O N N 236 DT N3 N N N 237 DT C4 C N N 238 DT O4 O N N 239 DT C5 C N N 240 DT C7 C N N 241 DT C6 C N N 242 DT HOP3 H N N 243 DT HOP2 H N N 244 DT "H5'" H N N 245 DT "H5''" H N N 246 DT "H4'" H N N 247 DT "H3'" H N N 248 DT "HO3'" H N N 249 DT "H2'" H N N 250 DT "H2''" H N N 251 DT "H1'" H N N 252 DT H3 H N N 253 DT H71 H N N 254 DT H72 H N N 255 DT H73 H N N 256 DT H6 H N N 257 GLN N N N N 258 GLN CA C N S 259 GLN C C N N 260 GLN O O N N 261 GLN CB C N N 262 GLN CG C N N 263 GLN CD C N N 264 GLN OE1 O N N 265 GLN NE2 N N N 266 GLN OXT O N N 267 GLN H H N N 268 GLN H2 H N N 269 GLN HA H N N 270 GLN HB2 H N N 271 GLN HB3 H N N 272 GLN HG2 H N N 273 GLN HG3 H N N 274 GLN HE21 H N N 275 GLN HE22 H N N 276 GLN HXT H N N 277 GLU N N N N 278 GLU CA C N S 279 GLU C C N N 280 GLU O O N N 281 GLU CB C N N 282 GLU CG C N N 283 GLU CD C N N 284 GLU OE1 O N N 285 GLU OE2 O N N 286 GLU OXT O N N 287 GLU H H N N 288 GLU H2 H N N 289 GLU HA H N N 290 GLU HB2 H N N 291 GLU HB3 H N N 292 GLU HG2 H N N 293 GLU HG3 H N N 294 GLU HE2 H N N 295 GLU HXT H N N 296 GLY N N N N 297 GLY CA C N N 298 GLY C C N N 299 GLY O O N N 300 GLY OXT O N N 301 GLY H H N N 302 GLY H2 H N N 303 GLY HA2 H N N 304 GLY HA3 H N N 305 GLY HXT H N N 306 GOL C1 C N N 307 GOL O1 O N N 308 GOL C2 C N N 309 GOL O2 O N N 310 GOL C3 C N N 311 GOL O3 O N N 312 GOL H11 H N N 313 GOL H12 H N N 314 GOL HO1 H N N 315 GOL H2 H N N 316 GOL HO2 H N N 317 GOL H31 H N N 318 GOL H32 H N N 319 GOL HO3 H N N 320 HIS N N N N 321 HIS CA C N S 322 HIS C C N N 323 HIS O O N N 324 HIS CB C N N 325 HIS CG C Y N 326 HIS ND1 N Y N 327 HIS CD2 C Y N 328 HIS CE1 C Y N 329 HIS NE2 N Y N 330 HIS OXT O N N 331 HIS H H N N 332 HIS H2 H N N 333 HIS HA H N N 334 HIS HB2 H N N 335 HIS HB3 H N N 336 HIS HD1 H N N 337 HIS HD2 H N N 338 HIS HE1 H N N 339 HIS HE2 H N N 340 HIS HXT H N N 341 HOH O O N N 342 HOH H1 H N N 343 HOH H2 H N N 344 LEU N N N N 345 LEU CA C N S 346 LEU C C N N 347 LEU O O N N 348 LEU CB C N N 349 LEU CG C N N 350 LEU CD1 C N N 351 LEU CD2 C N N 352 LEU OXT O N N 353 LEU H H N N 354 LEU H2 H N N 355 LEU HA H N N 356 LEU HB2 H N N 357 LEU HB3 H N N 358 LEU HG H N N 359 LEU HD11 H N N 360 LEU HD12 H N N 361 LEU HD13 H N N 362 LEU HD21 H N N 363 LEU HD22 H N N 364 LEU HD23 H N N 365 LEU HXT H N N 366 LYS N N N N 367 LYS CA C N S 368 LYS C C N N 369 LYS O O N N 370 LYS CB C N N 371 LYS CG C N N 372 LYS CD C N N 373 LYS CE C N N 374 LYS NZ N N N 375 LYS OXT O N N 376 LYS H H N N 377 LYS H2 H N N 378 LYS HA H N N 379 LYS HB2 H N N 380 LYS HB3 H N N 381 LYS HG2 H N N 382 LYS HG3 H N N 383 LYS HD2 H N N 384 LYS HD3 H N N 385 LYS HE2 H N N 386 LYS HE3 H N N 387 LYS HZ1 H N N 388 LYS HZ2 H N N 389 LYS HZ3 H N N 390 LYS HXT H N N 391 MET N N N N 392 MET CA C N S 393 MET C C N N 394 MET O O N N 395 MET CB C N N 396 MET CG C N N 397 MET SD S N N 398 MET CE C N N 399 MET OXT O N N 400 MET H H N N 401 MET H2 H N N 402 MET HA H N N 403 MET HB2 H N N 404 MET HB3 H N N 405 MET HG2 H N N 406 MET HG3 H N N 407 MET HE1 H N N 408 MET HE2 H N N 409 MET HE3 H N N 410 MET HXT H N N 411 PHE N N N N 412 PHE CA C N S 413 PHE C C N N 414 PHE O O N N 415 PHE CB C N N 416 PHE CG C Y N 417 PHE CD1 C Y N 418 PHE CD2 C Y N 419 PHE CE1 C Y N 420 PHE CE2 C Y N 421 PHE CZ C Y N 422 PHE OXT O N N 423 PHE H H N N 424 PHE H2 H N N 425 PHE HA H N N 426 PHE HB2 H N N 427 PHE HB3 H N N 428 PHE HD1 H N N 429 PHE HD2 H N N 430 PHE HE1 H N N 431 PHE HE2 H N N 432 PHE HZ H N N 433 PHE HXT H N N 434 PRO N N N N 435 PRO CA C N S 436 PRO C C N N 437 PRO O O N N 438 PRO CB C N N 439 PRO CG C N N 440 PRO CD C N N 441 PRO OXT O N N 442 PRO H H N N 443 PRO HA H N N 444 PRO HB2 H N N 445 PRO HB3 H N N 446 PRO HG2 H N N 447 PRO HG3 H N N 448 PRO HD2 H N N 449 PRO HD3 H N N 450 PRO HXT H N N 451 SER N N N N 452 SER CA C N S 453 SER C C N N 454 SER O O N N 455 SER CB C N N 456 SER OG O N N 457 SER OXT O N N 458 SER H H N N 459 SER H2 H N N 460 SER HA H N N 461 SER HB2 H N N 462 SER HB3 H N N 463 SER HG H N N 464 SER HXT H N N 465 THR N N N N 466 THR CA C N S 467 THR C C N N 468 THR O O N N 469 THR CB C N R 470 THR OG1 O N N 471 THR CG2 C N N 472 THR OXT O N N 473 THR H H N N 474 THR H2 H N N 475 THR HA H N N 476 THR HB H N N 477 THR HG1 H N N 478 THR HG21 H N N 479 THR HG22 H N N 480 THR HG23 H N N 481 THR HXT H N N 482 TRP N N N N 483 TRP CA C N S 484 TRP C C N N 485 TRP O O N N 486 TRP CB C N N 487 TRP CG C Y N 488 TRP CD1 C Y N 489 TRP CD2 C Y N 490 TRP NE1 N Y N 491 TRP CE2 C Y N 492 TRP CE3 C Y N 493 TRP CZ2 C Y N 494 TRP CZ3 C Y N 495 TRP CH2 C Y N 496 TRP OXT O N N 497 TRP H H N N 498 TRP H2 H N N 499 TRP HA H N N 500 TRP HB2 H N N 501 TRP HB3 H N N 502 TRP HD1 H N N 503 TRP HE1 H N N 504 TRP HE3 H N N 505 TRP HZ2 H N N 506 TRP HZ3 H N N 507 TRP HH2 H N N 508 TRP HXT H N N 509 TYR N N N N 510 TYR CA C N S 511 TYR C C N N 512 TYR O O N N 513 TYR CB C N N 514 TYR CG C Y N 515 TYR CD1 C Y N 516 TYR CD2 C Y N 517 TYR CE1 C Y N 518 TYR CE2 C Y N 519 TYR CZ C Y N 520 TYR OH O N N 521 TYR OXT O N N 522 TYR H H N N 523 TYR H2 H N N 524 TYR HA H N N 525 TYR HB2 H N N 526 TYR HB3 H N N 527 TYR HD1 H N N 528 TYR HD2 H N N 529 TYR HE1 H N N 530 TYR HE2 H N N 531 TYR HH H N N 532 TYR HXT H N N 533 ZN ZN ZN N N 534 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ACT C O doub N N 39 ACT C OXT sing N N 40 ACT C CH3 sing N N 41 ACT CH3 H1 sing N N 42 ACT CH3 H2 sing N N 43 ACT CH3 H3 sing N N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASP N CA sing N N 83 ASP N H sing N N 84 ASP N H2 sing N N 85 ASP CA C sing N N 86 ASP CA CB sing N N 87 ASP CA HA sing N N 88 ASP C O doub N N 89 ASP C OXT sing N N 90 ASP CB CG sing N N 91 ASP CB HB2 sing N N 92 ASP CB HB3 sing N N 93 ASP CG OD1 doub N N 94 ASP CG OD2 sing N N 95 ASP OD2 HD2 sing N N 96 ASP OXT HXT sing N N 97 CYS N CA sing N N 98 CYS N H sing N N 99 CYS N H2 sing N N 100 CYS CA C sing N N 101 CYS CA CB sing N N 102 CYS CA HA sing N N 103 CYS C O doub N N 104 CYS C OXT sing N N 105 CYS CB SG sing N N 106 CYS CB HB2 sing N N 107 CYS CB HB3 sing N N 108 CYS SG HG sing N N 109 CYS OXT HXT sing N N 110 DA OP3 P sing N N 111 DA OP3 HOP3 sing N N 112 DA P OP1 doub N N 113 DA P OP2 sing N N 114 DA P "O5'" sing N N 115 DA OP2 HOP2 sing N N 116 DA "O5'" "C5'" sing N N 117 DA "C5'" "C4'" sing N N 118 DA "C5'" "H5'" sing N N 119 DA "C5'" "H5''" sing N N 120 DA "C4'" "O4'" sing N N 121 DA "C4'" "C3'" sing N N 122 DA "C4'" "H4'" sing N N 123 DA "O4'" "C1'" sing N N 124 DA "C3'" "O3'" sing N N 125 DA "C3'" "C2'" sing N N 126 DA "C3'" "H3'" sing N N 127 DA "O3'" "HO3'" sing N N 128 DA "C2'" "C1'" sing N N 129 DA "C2'" "H2'" sing N N 130 DA "C2'" "H2''" sing N N 131 DA "C1'" N9 sing N N 132 DA "C1'" "H1'" sing N N 133 DA N9 C8 sing Y N 134 DA N9 C4 sing Y N 135 DA C8 N7 doub Y N 136 DA C8 H8 sing N N 137 DA N7 C5 sing Y N 138 DA C5 C6 sing Y N 139 DA C5 C4 doub Y N 140 DA C6 N6 sing N N 141 DA C6 N1 doub Y N 142 DA N6 H61 sing N N 143 DA N6 H62 sing N N 144 DA N1 C2 sing Y N 145 DA C2 N3 doub Y N 146 DA C2 H2 sing N N 147 DA N3 C4 sing Y N 148 DC OP3 P sing N N 149 DC OP3 HOP3 sing N N 150 DC P OP1 doub N N 151 DC P OP2 sing N N 152 DC P "O5'" sing N N 153 DC OP2 HOP2 sing N N 154 DC "O5'" "C5'" sing N N 155 DC "C5'" "C4'" sing N N 156 DC "C5'" "H5'" sing N N 157 DC "C5'" "H5''" sing N N 158 DC "C4'" "O4'" sing N N 159 DC "C4'" "C3'" sing N N 160 DC "C4'" "H4'" sing N N 161 DC "O4'" "C1'" sing N N 162 DC "C3'" "O3'" sing N N 163 DC "C3'" "C2'" sing N N 164 DC "C3'" "H3'" sing N N 165 DC "O3'" "HO3'" sing N N 166 DC "C2'" "C1'" sing N N 167 DC "C2'" "H2'" sing N N 168 DC "C2'" "H2''" sing N N 169 DC "C1'" N1 sing N N 170 DC "C1'" "H1'" sing N N 171 DC N1 C2 sing N N 172 DC N1 C6 sing N N 173 DC C2 O2 doub N N 174 DC C2 N3 sing N N 175 DC N3 C4 doub N N 176 DC C4 N4 sing N N 177 DC C4 C5 sing N N 178 DC N4 H41 sing N N 179 DC N4 H42 sing N N 180 DC C5 C6 doub N N 181 DC C5 H5 sing N N 182 DC C6 H6 sing N N 183 DG OP3 P sing N N 184 DG OP3 HOP3 sing N N 185 DG P OP1 doub N N 186 DG P OP2 sing N N 187 DG P "O5'" sing N N 188 DG OP2 HOP2 sing N N 189 DG "O5'" "C5'" sing N N 190 DG "C5'" "C4'" sing N N 191 DG "C5'" "H5'" sing N N 192 DG "C5'" "H5''" sing N N 193 DG "C4'" "O4'" sing N N 194 DG "C4'" "C3'" sing N N 195 DG "C4'" "H4'" sing N N 196 DG "O4'" "C1'" sing N N 197 DG "C3'" "O3'" sing N N 198 DG "C3'" "C2'" sing N N 199 DG "C3'" "H3'" sing N N 200 DG "O3'" "HO3'" sing N N 201 DG "C2'" "C1'" sing N N 202 DG "C2'" "H2'" sing N N 203 DG "C2'" "H2''" sing N N 204 DG "C1'" N9 sing N N 205 DG "C1'" "H1'" sing N N 206 DG N9 C8 sing Y N 207 DG N9 C4 sing Y N 208 DG C8 N7 doub Y N 209 DG C8 H8 sing N N 210 DG N7 C5 sing Y N 211 DG C5 C6 sing N N 212 DG C5 C4 doub Y N 213 DG C6 O6 doub N N 214 DG C6 N1 sing N N 215 DG N1 C2 sing N N 216 DG N1 H1 sing N N 217 DG C2 N2 sing N N 218 DG C2 N3 doub N N 219 DG N2 H21 sing N N 220 DG N2 H22 sing N N 221 DG N3 C4 sing N N 222 DT OP3 P sing N N 223 DT OP3 HOP3 sing N N 224 DT P OP1 doub N N 225 DT P OP2 sing N N 226 DT P "O5'" sing N N 227 DT OP2 HOP2 sing N N 228 DT "O5'" "C5'" sing N N 229 DT "C5'" "C4'" sing N N 230 DT "C5'" "H5'" sing N N 231 DT "C5'" "H5''" sing N N 232 DT "C4'" "O4'" sing N N 233 DT "C4'" "C3'" sing N N 234 DT "C4'" "H4'" sing N N 235 DT "O4'" "C1'" sing N N 236 DT "C3'" "O3'" sing N N 237 DT "C3'" "C2'" sing N N 238 DT "C3'" "H3'" sing N N 239 DT "O3'" "HO3'" sing N N 240 DT "C2'" "C1'" sing N N 241 DT "C2'" "H2'" sing N N 242 DT "C2'" "H2''" sing N N 243 DT "C1'" N1 sing N N 244 DT "C1'" "H1'" sing N N 245 DT N1 C2 sing N N 246 DT N1 C6 sing N N 247 DT C2 O2 doub N N 248 DT C2 N3 sing N N 249 DT N3 C4 sing N N 250 DT N3 H3 sing N N 251 DT C4 O4 doub N N 252 DT C4 C5 sing N N 253 DT C5 C7 sing N N 254 DT C5 C6 doub N N 255 DT C7 H71 sing N N 256 DT C7 H72 sing N N 257 DT C7 H73 sing N N 258 DT C6 H6 sing N N 259 GLN N CA sing N N 260 GLN N H sing N N 261 GLN N H2 sing N N 262 GLN CA C sing N N 263 GLN CA CB sing N N 264 GLN CA HA sing N N 265 GLN C O doub N N 266 GLN C OXT sing N N 267 GLN CB CG sing N N 268 GLN CB HB2 sing N N 269 GLN CB HB3 sing N N 270 GLN CG CD sing N N 271 GLN CG HG2 sing N N 272 GLN CG HG3 sing N N 273 GLN CD OE1 doub N N 274 GLN CD NE2 sing N N 275 GLN NE2 HE21 sing N N 276 GLN NE2 HE22 sing N N 277 GLN OXT HXT sing N N 278 GLU N CA sing N N 279 GLU N H sing N N 280 GLU N H2 sing N N 281 GLU CA C sing N N 282 GLU CA CB sing N N 283 GLU CA HA sing N N 284 GLU C O doub N N 285 GLU C OXT sing N N 286 GLU CB CG sing N N 287 GLU CB HB2 sing N N 288 GLU CB HB3 sing N N 289 GLU CG CD sing N N 290 GLU CG HG2 sing N N 291 GLU CG HG3 sing N N 292 GLU CD OE1 doub N N 293 GLU CD OE2 sing N N 294 GLU OE2 HE2 sing N N 295 GLU OXT HXT sing N N 296 GLY N CA sing N N 297 GLY N H sing N N 298 GLY N H2 sing N N 299 GLY CA C sing N N 300 GLY CA HA2 sing N N 301 GLY CA HA3 sing N N 302 GLY C O doub N N 303 GLY C OXT sing N N 304 GLY OXT HXT sing N N 305 GOL C1 O1 sing N N 306 GOL C1 C2 sing N N 307 GOL C1 H11 sing N N 308 GOL C1 H12 sing N N 309 GOL O1 HO1 sing N N 310 GOL C2 O2 sing N N 311 GOL C2 C3 sing N N 312 GOL C2 H2 sing N N 313 GOL O2 HO2 sing N N 314 GOL C3 O3 sing N N 315 GOL C3 H31 sing N N 316 GOL C3 H32 sing N N 317 GOL O3 HO3 sing N N 318 HIS N CA sing N N 319 HIS N H sing N N 320 HIS N H2 sing N N 321 HIS CA C sing N N 322 HIS CA CB sing N N 323 HIS CA HA sing N N 324 HIS C O doub N N 325 HIS C OXT sing N N 326 HIS CB CG sing N N 327 HIS CB HB2 sing N N 328 HIS CB HB3 sing N N 329 HIS CG ND1 sing Y N 330 HIS CG CD2 doub Y N 331 HIS ND1 CE1 doub Y N 332 HIS ND1 HD1 sing N N 333 HIS CD2 NE2 sing Y N 334 HIS CD2 HD2 sing N N 335 HIS CE1 NE2 sing Y N 336 HIS CE1 HE1 sing N N 337 HIS NE2 HE2 sing N N 338 HIS OXT HXT sing N N 339 HOH O H1 sing N N 340 HOH O H2 sing N N 341 LEU N CA sing N N 342 LEU N H sing N N 343 LEU N H2 sing N N 344 LEU CA C sing N N 345 LEU CA CB sing N N 346 LEU CA HA sing N N 347 LEU C O doub N N 348 LEU C OXT sing N N 349 LEU CB CG sing N N 350 LEU CB HB2 sing N N 351 LEU CB HB3 sing N N 352 LEU CG CD1 sing N N 353 LEU CG CD2 sing N N 354 LEU CG HG sing N N 355 LEU CD1 HD11 sing N N 356 LEU CD1 HD12 sing N N 357 LEU CD1 HD13 sing N N 358 LEU CD2 HD21 sing N N 359 LEU CD2 HD22 sing N N 360 LEU CD2 HD23 sing N N 361 LEU OXT HXT sing N N 362 LYS N CA sing N N 363 LYS N H sing N N 364 LYS N H2 sing N N 365 LYS CA C sing N N 366 LYS CA CB sing N N 367 LYS CA HA sing N N 368 LYS C O doub N N 369 LYS C OXT sing N N 370 LYS CB CG sing N N 371 LYS CB HB2 sing N N 372 LYS CB HB3 sing N N 373 LYS CG CD sing N N 374 LYS CG HG2 sing N N 375 LYS CG HG3 sing N N 376 LYS CD CE sing N N 377 LYS CD HD2 sing N N 378 LYS CD HD3 sing N N 379 LYS CE NZ sing N N 380 LYS CE HE2 sing N N 381 LYS CE HE3 sing N N 382 LYS NZ HZ1 sing N N 383 LYS NZ HZ2 sing N N 384 LYS NZ HZ3 sing N N 385 LYS OXT HXT sing N N 386 MET N CA sing N N 387 MET N H sing N N 388 MET N H2 sing N N 389 MET CA C sing N N 390 MET CA CB sing N N 391 MET CA HA sing N N 392 MET C O doub N N 393 MET C OXT sing N N 394 MET CB CG sing N N 395 MET CB HB2 sing N N 396 MET CB HB3 sing N N 397 MET CG SD sing N N 398 MET CG HG2 sing N N 399 MET CG HG3 sing N N 400 MET SD CE sing N N 401 MET CE HE1 sing N N 402 MET CE HE2 sing N N 403 MET CE HE3 sing N N 404 MET OXT HXT sing N N 405 PHE N CA sing N N 406 PHE N H sing N N 407 PHE N H2 sing N N 408 PHE CA C sing N N 409 PHE CA CB sing N N 410 PHE CA HA sing N N 411 PHE C O doub N N 412 PHE C OXT sing N N 413 PHE CB CG sing N N 414 PHE CB HB2 sing N N 415 PHE CB HB3 sing N N 416 PHE CG CD1 doub Y N 417 PHE CG CD2 sing Y N 418 PHE CD1 CE1 sing Y N 419 PHE CD1 HD1 sing N N 420 PHE CD2 CE2 doub Y N 421 PHE CD2 HD2 sing N N 422 PHE CE1 CZ doub Y N 423 PHE CE1 HE1 sing N N 424 PHE CE2 CZ sing Y N 425 PHE CE2 HE2 sing N N 426 PHE CZ HZ sing N N 427 PHE OXT HXT sing N N 428 PRO N CA sing N N 429 PRO N CD sing N N 430 PRO N H sing N N 431 PRO CA C sing N N 432 PRO CA CB sing N N 433 PRO CA HA sing N N 434 PRO C O doub N N 435 PRO C OXT sing N N 436 PRO CB CG sing N N 437 PRO CB HB2 sing N N 438 PRO CB HB3 sing N N 439 PRO CG CD sing N N 440 PRO CG HG2 sing N N 441 PRO CG HG3 sing N N 442 PRO CD HD2 sing N N 443 PRO CD HD3 sing N N 444 PRO OXT HXT sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TRP N CA sing N N 475 TRP N H sing N N 476 TRP N H2 sing N N 477 TRP CA C sing N N 478 TRP CA CB sing N N 479 TRP CA HA sing N N 480 TRP C O doub N N 481 TRP C OXT sing N N 482 TRP CB CG sing N N 483 TRP CB HB2 sing N N 484 TRP CB HB3 sing N N 485 TRP CG CD1 doub Y N 486 TRP CG CD2 sing Y N 487 TRP CD1 NE1 sing Y N 488 TRP CD1 HD1 sing N N 489 TRP CD2 CE2 doub Y N 490 TRP CD2 CE3 sing Y N 491 TRP NE1 CE2 sing Y N 492 TRP NE1 HE1 sing N N 493 TRP CE2 CZ2 sing Y N 494 TRP CE3 CZ3 doub Y N 495 TRP CE3 HE3 sing N N 496 TRP CZ2 CH2 doub Y N 497 TRP CZ2 HZ2 sing N N 498 TRP CZ3 CH2 sing Y N 499 TRP CZ3 HZ3 sing N N 500 TRP CH2 HH2 sing N N 501 TRP OXT HXT sing N N 502 TYR N CA sing N N 503 TYR N H sing N N 504 TYR N H2 sing N N 505 TYR CA C sing N N 506 TYR CA CB sing N N 507 TYR CA HA sing N N 508 TYR C O doub N N 509 TYR C OXT sing N N 510 TYR CB CG sing N N 511 TYR CB HB2 sing N N 512 TYR CB HB3 sing N N 513 TYR CG CD1 doub Y N 514 TYR CG CD2 sing Y N 515 TYR CD1 CE1 sing Y N 516 TYR CD1 HD1 sing N N 517 TYR CD2 CE2 doub Y N 518 TYR CD2 HD2 sing N N 519 TYR CE1 CZ doub Y N 520 TYR CE1 HE1 sing N N 521 TYR CE2 CZ sing Y N 522 TYR CE2 HE2 sing N N 523 TYR CZ OH sing N N 524 TYR OH HH sing N N 525 TYR OXT HXT sing N N 526 # _ndb_struct_conf_na.entry_id 4M9E _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 10 1_555 -0.252 -0.159 -0.097 -0.768 -10.341 1.983 1 B_DG1:DC10_C B 1 ? C 10 ? 19 1 1 B DA 2 1_555 C DT 9 1_555 0.146 -0.133 0.082 1.207 -12.178 -0.837 2 B_DA2:DT9_C B 2 ? C 9 ? 20 1 1 B DG 3 1_555 C DC 8 1_555 -0.281 -0.207 0.143 0.698 -8.130 -1.724 3 B_DG3:DC8_C B 3 ? C 8 ? 19 1 1 B DG 4 1_555 C DC 7 1_555 -0.216 -0.213 -0.160 -6.180 -12.188 -1.238 4 B_DG4:DC7_C B 4 ? C 7 ? 19 1 1 B 5CM 5 1_555 C DG 6 1_555 0.083 -0.133 -0.073 -1.936 -4.269 -0.812 5 B_5CM5:DG6_C B 5 ? C 6 ? 19 1 1 B DG 6 1_555 C 5CM 5 1_555 -0.223 -0.133 -0.162 -5.725 -11.789 -0.893 6 B_DG6:5CM5_C B 6 ? C 5 ? 19 1 1 B DT 7 1_555 C DA 4 1_555 -0.204 0.066 0.198 -9.336 -8.899 5.218 7 B_DT7:DA4_C B 7 ? C 4 ? 20 1 1 B DG 8 1_555 C DC 3 1_555 -0.188 -0.119 -0.051 0.663 -4.327 0.983 8 B_DG8:DC3_C B 8 ? C 3 ? 19 1 1 B DG 9 1_555 C DC 2 1_555 0.036 -0.180 0.096 4.061 -8.841 -2.972 9 B_DG9:DC2_C B 9 ? C 2 ? 19 1 1 B DC 10 1_555 C DG 1 1_555 0.217 -0.161 0.044 -1.420 -9.379 2.632 10 B_DC10:DG1_C B 10 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 10 1_555 B DA 2 1_555 C DT 9 1_555 -0.201 -0.472 3.206 -1.119 1.175 34.069 -0.987 0.169 3.193 2.003 1.908 34.107 1 BB_DG1DA2:DT9DC10_CC B 1 ? C 10 ? B 2 ? C 9 ? 1 B DA 2 1_555 C DT 9 1_555 B DG 3 1_555 C DC 8 1_555 -0.110 -0.475 3.282 -1.863 6.374 29.521 -2.190 -0.163 3.114 12.312 3.599 30.242 2 BB_DA2DG3:DC8DT9_CC B 2 ? C 9 ? B 3 ? C 8 ? 1 B DG 3 1_555 C DC 8 1_555 B DG 4 1_555 C DC 7 1_555 0.324 -0.753 3.501 2.520 7.865 34.500 -2.449 -0.143 3.271 13.031 -4.176 35.445 3 BB_DG3DG4:DC7DC8_CC B 3 ? C 8 ? B 4 ? C 7 ? 1 B DG 4 1_555 C DC 7 1_555 B 5CM 5 1_555 C DG 6 1_555 1.098 -0.525 3.151 1.766 2.878 31.983 -1.445 -1.677 3.148 5.205 -3.194 32.157 4 BB_DG45CM5:DG6DC7_CC B 4 ? C 7 ? B 5 ? C 6 ? 1 B 5CM 5 1_555 C DG 6 1_555 B DG 6 1_555 C 5CM 5 1_555 -1.414 -0.279 3.409 -3.236 9.075 30.079 -2.291 1.966 3.317 16.947 6.043 31.551 5 BB_5CM5DG6:5CM5DG6_CC B 5 ? C 6 ? B 6 ? C 5 ? 1 B DG 6 1_555 C 5CM 5 1_555 B DT 7 1_555 C DA 4 1_555 1.256 -0.580 3.353 -0.625 1.705 34.888 -1.229 -2.189 3.299 2.841 1.041 34.934 6 BB_DG6DT7:DA45CM5_CC B 6 ? C 5 ? B 7 ? C 4 ? 1 B DT 7 1_555 C DA 4 1_555 B DG 8 1_555 C DC 3 1_555 -1.128 0.783 3.202 1.100 5.991 29.224 0.277 2.420 3.251 11.715 -2.150 29.838 7 BB_DT7DG8:DC3DA4_CC B 7 ? C 4 ? B 8 ? C 3 ? 1 B DG 8 1_555 C DC 3 1_555 B DG 9 1_555 C DC 2 1_555 -1.261 0.497 3.222 -4.822 2.842 36.698 0.395 1.326 3.383 4.482 7.604 37.108 8 BB_DG8DG9:DC2DC3_CC B 8 ? C 3 ? B 9 ? C 2 ? 1 B DG 9 1_555 C DC 2 1_555 B DC 10 1_555 C DG 1 1_555 0.949 -0.444 3.430 1.528 -2.433 34.631 -0.349 -1.342 3.489 -4.079 -2.562 34.747 9 BB_DG9DC10:DG1DC2_CC B 9 ? C 2 ? B 10 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 'ACETATE ION' ACT 6 'ZINC ION' ZN 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WBU _pdbx_initial_refinement_model.details 'PDB ENTRY 2WBU' #