data_4M9I # _entry.id 4M9I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4M9I pdb_00004m9i 10.2210/pdb4m9i/pdb RCSB RCSB081635 ? ? WWPDB D_1000081635 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FOM . unspecified PDB 3U1I . unspecified PDB 3U1J . unspecified PDB 4M9F . unspecified PDB 4M9K . unspecified PDB 4M9M . unspecified PDB 4M9T . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4M9I _pdbx_database_status.recvd_initial_deposition_date 2013-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yildiz, M.' 1 'Hardy, J.A.' 2 # _citation.id primary _citation.title 'Allosteric Inhibition of the NS2B-NS3 Protease from Dengue Virus.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 8 _citation.page_first 2744 _citation.page_last 2752 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24164286 _citation.pdbx_database_id_DOI 10.1021/cb400612h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yildiz, M.' 1 ? primary 'Ghosh, S.' 2 ? primary 'Bell, J.A.' 3 ? primary 'Sherman, W.' 4 ? primary 'Hardy, J.A.' 5 ? # _cell.entry_id 4M9I _cell.length_a 59.469 _cell.length_b 62.153 _cell.length_c 114.619 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4M9I _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NS2B-NS3 protease' 26360.479 1 ? A125C 'UNP RESIDUES 1394-1440, 1476-1660' ? 2 water nat water 18.015 14 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMLEADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTLGGGGSGGGGAGVLWDVPSPPPVGKAEL EDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVL ALEPGKNPRAVQTKPGLFKTNTGTIGCVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIANTEKSIEDNPEI EDDIFRK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMLEADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTLGGGGSGGGGAGVLWDVPSPPPVGKAEL EDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVL ALEPGKNPRAVQTKPGLFKTNTGTIGCVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIANTEKSIEDNPEI EDDIFRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 LEU n 1 10 GLU n 1 11 LEU n 1 12 GLU n 1 13 ARG n 1 14 ALA n 1 15 ALA n 1 16 ASP n 1 17 VAL n 1 18 ARG n 1 19 TRP n 1 20 GLU n 1 21 GLU n 1 22 GLN n 1 23 ALA n 1 24 GLU n 1 25 ILE n 1 26 SER n 1 27 GLY n 1 28 SER n 1 29 SER n 1 30 PRO n 1 31 ILE n 1 32 LEU n 1 33 SER n 1 34 ILE n 1 35 THR n 1 36 ILE n 1 37 SER n 1 38 GLU n 1 39 ASP n 1 40 GLY n 1 41 SER n 1 42 MET n 1 43 SER n 1 44 ILE n 1 45 LYS n 1 46 ASN n 1 47 GLU n 1 48 GLU n 1 49 GLU n 1 50 GLU n 1 51 GLN n 1 52 THR n 1 53 LEU n 1 54 GLY n 1 55 GLY n 1 56 GLY n 1 57 GLY n 1 58 SER n 1 59 GLY n 1 60 GLY n 1 61 GLY n 1 62 GLY n 1 63 ALA n 1 64 GLY n 1 65 VAL n 1 66 LEU n 1 67 TRP n 1 68 ASP n 1 69 VAL n 1 70 PRO n 1 71 SER n 1 72 PRO n 1 73 PRO n 1 74 PRO n 1 75 VAL n 1 76 GLY n 1 77 LYS n 1 78 ALA n 1 79 GLU n 1 80 LEU n 1 81 GLU n 1 82 ASP n 1 83 GLY n 1 84 ALA n 1 85 TYR n 1 86 ARG n 1 87 ILE n 1 88 LYS n 1 89 GLN n 1 90 LYS n 1 91 GLY n 1 92 ILE n 1 93 LEU n 1 94 GLY n 1 95 TYR n 1 96 SER n 1 97 GLN n 1 98 ILE n 1 99 GLY n 1 100 ALA n 1 101 GLY n 1 102 VAL n 1 103 TYR n 1 104 LYS n 1 105 GLU n 1 106 GLY n 1 107 THR n 1 108 PHE n 1 109 HIS n 1 110 THR n 1 111 MET n 1 112 TRP n 1 113 HIS n 1 114 VAL n 1 115 THR n 1 116 ARG n 1 117 GLY n 1 118 ALA n 1 119 VAL n 1 120 LEU n 1 121 MET n 1 122 HIS n 1 123 LYS n 1 124 GLY n 1 125 LYS n 1 126 ARG n 1 127 ILE n 1 128 GLU n 1 129 PRO n 1 130 SER n 1 131 TRP n 1 132 ALA n 1 133 ASP n 1 134 VAL n 1 135 LYS n 1 136 LYS n 1 137 ASP n 1 138 LEU n 1 139 ILE n 1 140 SER n 1 141 TYR n 1 142 GLY n 1 143 GLY n 1 144 GLY n 1 145 TRP n 1 146 LYS n 1 147 LEU n 1 148 GLU n 1 149 GLY n 1 150 GLU n 1 151 TRP n 1 152 LYS n 1 153 GLU n 1 154 GLY n 1 155 GLU n 1 156 GLU n 1 157 VAL n 1 158 GLN n 1 159 VAL n 1 160 LEU n 1 161 ALA n 1 162 LEU n 1 163 GLU n 1 164 PRO n 1 165 GLY n 1 166 LYS n 1 167 ASN n 1 168 PRO n 1 169 ARG n 1 170 ALA n 1 171 VAL n 1 172 GLN n 1 173 THR n 1 174 LYS n 1 175 PRO n 1 176 GLY n 1 177 LEU n 1 178 PHE n 1 179 LYS n 1 180 THR n 1 181 ASN n 1 182 THR n 1 183 GLY n 1 184 THR n 1 185 ILE n 1 186 GLY n 1 187 CYS n 1 188 VAL n 1 189 SER n 1 190 LEU n 1 191 ASP n 1 192 PHE n 1 193 SER n 1 194 PRO n 1 195 GLY n 1 196 THR n 1 197 SER n 1 198 GLY n 1 199 SER n 1 200 PRO n 1 201 ILE n 1 202 VAL n 1 203 ASP n 1 204 LYS n 1 205 LYS n 1 206 GLY n 1 207 LYS n 1 208 VAL n 1 209 VAL n 1 210 GLY n 1 211 LEU n 1 212 TYR n 1 213 GLY n 1 214 ASN n 1 215 GLY n 1 216 VAL n 1 217 VAL n 1 218 THR n 1 219 ARG n 1 220 SER n 1 221 GLY n 1 222 ALA n 1 223 TYR n 1 224 VAL n 1 225 SER n 1 226 ALA n 1 227 ILE n 1 228 ALA n 1 229 ASN n 1 230 THR n 1 231 GLU n 1 232 LYS n 1 233 SER n 1 234 ILE n 1 235 GLU n 1 236 ASP n 1 237 ASN n 1 238 PRO n 1 239 GLU n 1 240 ILE n 1 241 GLU n 1 242 ASP n 1 243 ASP n 1 244 ILE n 1 245 PHE n 1 246 ARG n 1 247 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 7 53 ? ? NS2B-NS3 ? ? ? ? ;We ligated a synthetic gene encoding 6xHis(tag), NS2B region (43-95), GlyGlyGly GlySerGlyGlyGlyGly(linker, NS3 (1-185) ; ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? pet15b ? ? ? DVP2 ? ? 1 2 sample ? 63 239 ? ? NS2B-NS3 ? ? ? ? ;We ligated a synthetic gene encoding 6xHis(tag), NS2B region (43-95), GlyGlyGly GlySerGlyGlyGlyGly(linker, NS3 (1-185) ; ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? pet15b ? ? ? DVP2 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q91H74_9FLAV Q91H74 1 ADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTL 1394 ? 2 UNP Q91H74_9FLAV Q91H74 1 ;AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYG GGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGA YVSAIAQTEKSIEDNPEIEDDIFRK ; 1476 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M9I A 7 ? 53 ? Q91H74 1394 ? 1440 ? 49 95 2 2 4M9I A 63 ? 239 ? Q91H74 1476 ? 1652 ? 1001 1177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4M9I GLY A 1 ? UNP Q91H74 ? ? 'expression tag' 43 1 1 4M9I SER A 2 ? UNP Q91H74 ? ? 'expression tag' 44 2 1 4M9I HIS A 3 ? UNP Q91H74 ? ? 'expression tag' 45 3 1 4M9I MET A 4 ? UNP Q91H74 ? ? 'expression tag' 46 4 1 4M9I LEU A 5 ? UNP Q91H74 ? ? 'expression tag' 47 5 1 4M9I GLU A 6 ? UNP Q91H74 ? ? 'expression tag' 48 6 1 4M9I GLY A 54 ? UNP Q91H74 ? ? linker 96 7 2 4M9I GLY A 55 ? UNP Q91H74 ? ? linker 993 8 2 4M9I GLY A 56 ? UNP Q91H74 ? ? linker 994 9 2 4M9I GLY A 57 ? UNP Q91H74 ? ? linker 995 10 2 4M9I SER A 58 ? UNP Q91H74 ? ? linker 996 11 2 4M9I GLY A 59 ? UNP Q91H74 ? ? linker 997 12 2 4M9I GLY A 60 ? UNP Q91H74 ? ? linker 998 13 2 4M9I GLY A 61 ? UNP Q91H74 ? ? linker 999 14 2 4M9I GLY A 62 ? UNP Q91H74 ? ? linker 1000 15 2 4M9I CYS A 187 ? UNP Q91H74 ALA 1600 'engineered mutation' 1125 16 2 4M9I ASN A 229 ? UNP Q91H74 GLN 1642 conflict 1167 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4M9I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_percent_sol 38.77 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '40% PEG200, 0.1 M Acetic acid, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2011-12-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111) Channel Cut' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 4M9I _reflns.observed_criterion_sigma_I 3.5 _reflns.observed_criterion_sigma_F 2.1 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.41 _reflns.number_obs 8116 _reflns.number_all 8544 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.145 _reflns.pdbx_Rsym_value 0.145 _reflns.pdbx_netI_over_sigmaI 8.4 _reflns.B_iso_Wilson_estimate 62.7 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.37 _reflns_shell.d_res_low 2.41 _reflns_shell.percent_possible_all 96.3 _reflns_shell.Rmerge_I_obs 0.539 _reflns_shell.pdbx_Rsym_value 0.539 _reflns_shell.meanI_over_sigI_obs 2.04 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 817 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4M9I _refine.ls_number_reflns_obs 8116 _refine.ls_number_reflns_all 8544 _refine.pdbx_ls_sigma_I 3.8 _refine.pdbx_ls_sigma_F 2.1 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.21832 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21533 _refine.ls_R_factor_R_free 0.27587 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 428 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.893 _refine.B_iso_mean 52.664 _refine.aniso_B[1][1] 2.40 _refine.aniso_B[2][2] -4.38 _refine.aniso_B[3][3] 1.98 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2FOM _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.490 _refine.pdbx_overall_ESU_R_Free 0.297 _refine.overall_SU_ML 0.201 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.505 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1492 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 1506 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.015 0.019 ? 1602 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.833 1.962 ? 2182 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.901 5.000 ? 220 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 28.694 24.219 ? 64 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 19.524 15.000 ? 281 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 23.991 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.119 0.200 ? 239 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.008 0.021 ? 1212 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.463 _refine_ls_shell.number_reflns_R_work 478 _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.percent_reflns_obs 91.12 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 817 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4M9I _struct.title 'A125C NS2B-NS3 protease from dengue virus at pH 5.5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M9I _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text ;serine protease, allosteric inhibition, dengue virus protease, trypsin-like protease, conformational flexibility, viral protease, VIRAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 20 ? GLY A 27 ? GLU A 62 GLY A 69 1 ? 8 HELX_P HELX_P2 2 MET A 111 ? ARG A 116 ? MET A 1049 ARG A 1054 1 ? 6 HELX_P HELX_P3 3 SER A 193 ? SER A 197 ? SER A 1131 SER A 1135 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 9 ? ALA A 15 ? LEU A 51 ALA A 57 A 2 GLY A 83 ? GLY A 91 ? GLY A 1021 GLY A 1029 A 3 GLY A 94 ? LYS A 104 ? GLY A 1032 LYS A 1042 A 4 THR A 107 ? THR A 110 ? THR A 1045 THR A 1048 A 5 LEU A 138 ? TYR A 141 ? LEU A 1076 TYR A 1079 A 6 PRO A 129 ? ASP A 133 ? PRO A 1067 ASP A 1071 B 1 SER A 28 ? PRO A 30 ? SER A 70 PRO A 72 B 2 ARG A 169 ? THR A 173 ? ARG A 1107 THR A 1111 B 3 VAL A 157 ? ALA A 161 ? VAL A 1095 ALA A 1099 B 4 PRO A 200 ? VAL A 202 ? PRO A 1138 VAL A 1140 B 5 VAL A 208 ? LEU A 211 ? VAL A 1146 LEU A 1149 C 1 LEU A 120 ? HIS A 122 ? LEU A 1058 HIS A 1060 C 2 LYS A 125 ? ILE A 127 ? LYS A 1063 ILE A 1065 D 1 GLY A 176 ? THR A 180 ? GLY A 1114 THR A 1118 D 2 GLY A 183 ? VAL A 188 ? GLY A 1121 VAL A 1126 D 3 TYR A 223 ? GLU A 231 ? TYR A 1161 GLU A 1169 D 4 GLY A 215 ? VAL A 217 ? GLY A 1153 VAL A 1155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 12 ? N GLU A 54 O ARG A 86 ? O ARG A 1024 A 2 3 N GLN A 89 ? N GLN A 1027 O SER A 96 ? O SER A 1034 A 3 4 N LYS A 104 ? N LYS A 1042 O THR A 107 ? O THR A 1045 A 4 5 N PHE A 108 ? N PHE A 1046 O TYR A 141 ? O TYR A 1079 A 5 6 O SER A 140 ? O SER A 1078 N TRP A 131 ? N TRP A 1069 B 1 2 N SER A 29 ? N SER A 71 O ALA A 170 ? O ALA A 1108 B 2 3 O VAL A 171 ? O VAL A 1109 N VAL A 159 ? N VAL A 1097 B 3 4 N GLN A 158 ? N GLN A 1096 O VAL A 202 ? O VAL A 1140 B 4 5 N ILE A 201 ? N ILE A 1139 O GLY A 210 ? O GLY A 1148 C 1 2 N LEU A 120 ? N LEU A 1058 O ILE A 127 ? O ILE A 1065 D 1 2 N THR A 180 ? N THR A 1118 O GLY A 183 ? O GLY A 1121 D 2 3 N VAL A 188 ? N VAL A 1126 O SER A 225 ? O SER A 1163 D 3 4 O VAL A 224 ? O VAL A 1162 N VAL A 216 ? N VAL A 1154 # _database_PDB_matrix.entry_id 4M9I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4M9I _atom_sites.fract_transf_matrix[1][1] 0.016815 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016089 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008725 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 43 43 GLY GLY A . n A 1 2 SER 2 44 44 SER SER A . n A 1 3 HIS 3 45 45 HIS HIS A . n A 1 4 MET 4 46 46 MET MET A . n A 1 5 LEU 5 47 47 LEU LEU A . n A 1 6 GLU 6 48 48 GLU GLU A . n A 1 7 ALA 7 49 49 ALA ALA A . n A 1 8 ASP 8 50 50 ASP ASP A . n A 1 9 LEU 9 51 51 LEU LEU A . n A 1 10 GLU 10 52 52 GLU GLU A . n A 1 11 LEU 11 53 53 LEU LEU A . n A 1 12 GLU 12 54 54 GLU GLU A . n A 1 13 ARG 13 55 55 ARG ARG A . n A 1 14 ALA 14 56 56 ALA ALA A . n A 1 15 ALA 15 57 57 ALA ALA A . n A 1 16 ASP 16 58 58 ASP ASP A . n A 1 17 VAL 17 59 59 VAL VAL A . n A 1 18 ARG 18 60 60 ARG ARG A . n A 1 19 TRP 19 61 61 TRP TRP A . n A 1 20 GLU 20 62 62 GLU GLU A . n A 1 21 GLU 21 63 63 GLU GLU A . n A 1 22 GLN 22 64 64 GLN GLN A . n A 1 23 ALA 23 65 65 ALA ALA A . n A 1 24 GLU 24 66 66 GLU GLU A . n A 1 25 ILE 25 67 67 ILE ILE A . n A 1 26 SER 26 68 68 SER SER A . n A 1 27 GLY 27 69 69 GLY GLY A . n A 1 28 SER 28 70 70 SER SER A . n A 1 29 SER 29 71 71 SER SER A . n A 1 30 PRO 30 72 72 PRO PRO A . n A 1 31 ILE 31 73 73 ILE ILE A . n A 1 32 LEU 32 74 74 LEU LEU A . n A 1 33 SER 33 75 75 SER SER A . n A 1 34 ILE 34 76 76 ILE ILE A . n A 1 35 THR 35 77 ? ? ? A . n A 1 36 ILE 36 78 ? ? ? A . n A 1 37 SER 37 79 ? ? ? A . n A 1 38 GLU 38 80 ? ? ? A . n A 1 39 ASP 39 81 ? ? ? A . n A 1 40 GLY 40 82 ? ? ? A . n A 1 41 SER 41 83 ? ? ? A . n A 1 42 MET 42 84 ? ? ? A . n A 1 43 SER 43 85 85 SER SER A . n A 1 44 ILE 44 86 86 ILE ILE A . n A 1 45 LYS 45 87 87 LYS LYS A . n A 1 46 ASN 46 88 88 ASN ASN A . n A 1 47 GLU 47 89 89 GLU GLU A . n A 1 48 GLU 48 90 90 GLU GLU A . n A 1 49 GLU 49 91 91 GLU GLU A . n A 1 50 GLU 50 92 92 GLU GLU A . n A 1 51 GLN 51 93 93 GLN GLN A . n A 1 52 THR 52 94 94 THR THR A . n A 1 53 LEU 53 95 95 LEU LEU A . n A 1 54 GLY 54 96 96 GLY GLY A . n A 1 55 GLY 55 993 ? ? ? A . n A 1 56 GLY 56 994 ? ? ? A . n A 1 57 GLY 57 995 ? ? ? A . n A 1 58 SER 58 996 ? ? ? A . n A 1 59 GLY 59 997 ? ? ? A . n A 1 60 GLY 60 998 ? ? ? A . n A 1 61 GLY 61 999 ? ? ? A . n A 1 62 GLY 62 1000 ? ? ? A . n A 1 63 ALA 63 1001 ? ? ? A . n A 1 64 GLY 64 1002 ? ? ? A . n A 1 65 VAL 65 1003 ? ? ? A . n A 1 66 LEU 66 1004 ? ? ? A . n A 1 67 TRP 67 1005 ? ? ? A . n A 1 68 ASP 68 1006 ? ? ? A . n A 1 69 VAL 69 1007 ? ? ? A . n A 1 70 PRO 70 1008 ? ? ? A . n A 1 71 SER 71 1009 ? ? ? A . n A 1 72 PRO 72 1010 ? ? ? A . n A 1 73 PRO 73 1011 ? ? ? A . n A 1 74 PRO 74 1012 ? ? ? A . n A 1 75 VAL 75 1013 ? ? ? A . n A 1 76 GLY 76 1014 ? ? ? A . n A 1 77 LYS 77 1015 ? ? ? A . n A 1 78 ALA 78 1016 ? ? ? A . n A 1 79 GLU 79 1017 ? ? ? A . n A 1 80 LEU 80 1018 ? ? ? A . n A 1 81 GLU 81 1019 19 GLU GLU A . n A 1 82 ASP 82 1020 20 ASP ASP A . n A 1 83 GLY 83 1021 21 GLY GLY A . n A 1 84 ALA 84 1022 22 ALA ALA A . n A 1 85 TYR 85 1023 23 TYR TYR A . n A 1 86 ARG 86 1024 24 ARG ARG A . n A 1 87 ILE 87 1025 25 ILE ILE A . n A 1 88 LYS 88 1026 26 LYS LYS A . n A 1 89 GLN 89 1027 27 GLN GLN A . n A 1 90 LYS 90 1028 28 LYS LYS A . n A 1 91 GLY 91 1029 29 GLY GLY A . n A 1 92 ILE 92 1030 30 ILE ILE A . n A 1 93 LEU 93 1031 31 LEU LEU A . n A 1 94 GLY 94 1032 32 GLY GLY A . n A 1 95 TYR 95 1033 33 TYR TYR A . n A 1 96 SER 96 1034 34 SER SER A . n A 1 97 GLN 97 1035 35 GLN GLN A . n A 1 98 ILE 98 1036 36 ILE ILE A . n A 1 99 GLY 99 1037 37 GLY GLY A . n A 1 100 ALA 100 1038 38 ALA ALA A . n A 1 101 GLY 101 1039 39 GLY GLY A . n A 1 102 VAL 102 1040 40 VAL VAL A . n A 1 103 TYR 103 1041 41 TYR TYR A . n A 1 104 LYS 104 1042 42 LYS LYS A . n A 1 105 GLU 105 1043 43 GLU GLU A . n A 1 106 GLY 106 1044 44 GLY GLY A . n A 1 107 THR 107 1045 45 THR THR A . n A 1 108 PHE 108 1046 46 PHE PHE A . n A 1 109 HIS 109 1047 47 HIS HIS A . n A 1 110 THR 110 1048 48 THR THR A . n A 1 111 MET 111 1049 49 MET MET A . n A 1 112 TRP 112 1050 50 TRP TRP A . n A 1 113 HIS 113 1051 51 HIS HIS A . n A 1 114 VAL 114 1052 52 VAL VAL A . n A 1 115 THR 115 1053 53 THR THR A . n A 1 116 ARG 116 1054 54 ARG ARG A . n A 1 117 GLY 117 1055 55 GLY GLY A . n A 1 118 ALA 118 1056 56 ALA ALA A . n A 1 119 VAL 119 1057 57 VAL VAL A . n A 1 120 LEU 120 1058 58 LEU LEU A . n A 1 121 MET 121 1059 59 MET MET A . n A 1 122 HIS 122 1060 60 HIS HIS A . n A 1 123 LYS 123 1061 61 LYS LYS A . n A 1 124 GLY 124 1062 62 GLY GLY A . n A 1 125 LYS 125 1063 63 LYS LYS A . n A 1 126 ARG 126 1064 64 ARG ARG A . n A 1 127 ILE 127 1065 65 ILE ILE A . n A 1 128 GLU 128 1066 66 GLU GLU A . n A 1 129 PRO 129 1067 67 PRO PRO A . n A 1 130 SER 130 1068 68 SER SER A . n A 1 131 TRP 131 1069 69 TRP TRP A . n A 1 132 ALA 132 1070 70 ALA ALA A . n A 1 133 ASP 133 1071 71 ASP ASP A . n A 1 134 VAL 134 1072 72 VAL VAL A . n A 1 135 LYS 135 1073 73 LYS LYS A . n A 1 136 LYS 136 1074 74 LYS LYS A . n A 1 137 ASP 137 1075 75 ASP ASP A . n A 1 138 LEU 138 1076 76 LEU LEU A . n A 1 139 ILE 139 1077 77 ILE ILE A . n A 1 140 SER 140 1078 78 SER SER A . n A 1 141 TYR 141 1079 79 TYR TYR A . n A 1 142 GLY 142 1080 80 GLY GLY A . n A 1 143 GLY 143 1081 81 GLY GLY A . n A 1 144 GLY 144 1082 82 GLY GLY A . n A 1 145 TRP 145 1083 83 TRP TRP A . n A 1 146 LYS 146 1084 84 LYS LYS A . n A 1 147 LEU 147 1085 85 LEU LEU A . n A 1 148 GLU 148 1086 86 GLU GLU A . n A 1 149 GLY 149 1087 87 GLY GLY A . n A 1 150 GLU 150 1088 88 GLU GLU A . n A 1 151 TRP 151 1089 89 TRP TRP A . n A 1 152 LYS 152 1090 90 LYS LYS A . n A 1 153 GLU 153 1091 91 GLU GLU A . n A 1 154 GLY 154 1092 92 GLY GLY A . n A 1 155 GLU 155 1093 93 GLU GLU A . n A 1 156 GLU 156 1094 94 GLU GLU A . n A 1 157 VAL 157 1095 95 VAL VAL A . n A 1 158 GLN 158 1096 96 GLN GLN A . n A 1 159 VAL 159 1097 97 VAL VAL A . n A 1 160 LEU 160 1098 98 LEU LEU A . n A 1 161 ALA 161 1099 99 ALA ALA A . n A 1 162 LEU 162 1100 100 LEU LEU A . n A 1 163 GLU 163 1101 101 GLU GLU A . n A 1 164 PRO 164 1102 102 PRO PRO A . n A 1 165 GLY 165 1103 103 GLY GLY A . n A 1 166 LYS 166 1104 104 LYS LYS A . n A 1 167 ASN 167 1105 105 ASN ASN A . n A 1 168 PRO 168 1106 106 PRO PRO A . n A 1 169 ARG 169 1107 107 ARG ARG A . n A 1 170 ALA 170 1108 108 ALA ALA A . n A 1 171 VAL 171 1109 109 VAL VAL A . n A 1 172 GLN 172 1110 110 GLN GLN A . n A 1 173 THR 173 1111 111 THR THR A . n A 1 174 LYS 174 1112 112 LYS LYS A . n A 1 175 PRO 175 1113 113 PRO PRO A . n A 1 176 GLY 176 1114 114 GLY GLY A . n A 1 177 LEU 177 1115 115 LEU LEU A . n A 1 178 PHE 178 1116 116 PHE PHE A . n A 1 179 LYS 179 1117 117 LYS LYS A . n A 1 180 THR 180 1118 118 THR THR A . n A 1 181 ASN 181 1119 119 ASN ASN A . n A 1 182 THR 182 1120 120 THR THR A . n A 1 183 GLY 183 1121 121 GLY GLY A . n A 1 184 THR 184 1122 122 THR THR A . n A 1 185 ILE 185 1123 123 ILE ILE A . n A 1 186 GLY 186 1124 124 GLY GLY A . n A 1 187 CYS 187 1125 125 CYS CYS A . n A 1 188 VAL 188 1126 126 VAL VAL A . n A 1 189 SER 189 1127 127 SER SER A . n A 1 190 LEU 190 1128 128 LEU LEU A . n A 1 191 ASP 191 1129 129 ASP ASP A . n A 1 192 PHE 192 1130 130 PHE PHE A . n A 1 193 SER 193 1131 131 SER SER A . n A 1 194 PRO 194 1132 132 PRO PRO A . n A 1 195 GLY 195 1133 133 GLY GLY A . n A 1 196 THR 196 1134 134 THR THR A . n A 1 197 SER 197 1135 135 SER SER A . n A 1 198 GLY 198 1136 136 GLY GLY A . n A 1 199 SER 199 1137 137 SER SER A . n A 1 200 PRO 200 1138 138 PRO PRO A . n A 1 201 ILE 201 1139 139 ILE ILE A . n A 1 202 VAL 202 1140 140 VAL VAL A . n A 1 203 ASP 203 1141 141 ASP ASP A . n A 1 204 LYS 204 1142 142 LYS LYS A . n A 1 205 LYS 205 1143 143 LYS LYS A . n A 1 206 GLY 206 1144 144 GLY GLY A . n A 1 207 LYS 207 1145 145 LYS LYS A . n A 1 208 VAL 208 1146 146 VAL VAL A . n A 1 209 VAL 209 1147 147 VAL VAL A . n A 1 210 GLY 210 1148 148 GLY GLY A . n A 1 211 LEU 211 1149 149 LEU LEU A . n A 1 212 TYR 212 1150 150 TYR TYR A . n A 1 213 GLY 213 1151 151 GLY GLY A . n A 1 214 ASN 214 1152 152 ASN ASN A . n A 1 215 GLY 215 1153 153 GLY GLY A . n A 1 216 VAL 216 1154 154 VAL VAL A . n A 1 217 VAL 217 1155 155 VAL VAL A . n A 1 218 THR 218 1156 156 THR THR A . n A 1 219 ARG 219 1157 157 ARG ARG A . n A 1 220 SER 220 1158 158 SER SER A . n A 1 221 GLY 221 1159 159 GLY GLY A . n A 1 222 ALA 222 1160 160 ALA ALA A . n A 1 223 TYR 223 1161 161 TYR TYR A . n A 1 224 VAL 224 1162 162 VAL VAL A . n A 1 225 SER 225 1163 163 SER SER A . n A 1 226 ALA 226 1164 164 ALA ALA A . n A 1 227 ILE 227 1165 165 ILE ILE A . n A 1 228 ALA 228 1166 166 ALA ALA A . n A 1 229 ASN 229 1167 167 ASN ASN A . n A 1 230 THR 230 1168 168 THR THR A . n A 1 231 GLU 231 1169 169 GLU GLU A . n A 1 232 LYS 232 1170 170 LYS LYS A . n A 1 233 SER 233 1171 171 SER SER A . n A 1 234 ILE 234 1172 ? ? ? A . n A 1 235 GLU 235 1173 ? ? ? A . n A 1 236 ASP 236 1174 ? ? ? A . n A 1 237 ASN 237 1175 ? ? ? A . n A 1 238 PRO 238 1176 ? ? ? A . n A 1 239 GLU 239 1177 ? ? ? A . n A 1 240 ILE 240 1178 ? ? ? A . n A 1 241 GLU 241 1179 ? ? ? A . n A 1 242 ASP 242 1180 ? ? ? A . n A 1 243 ASP 243 1181 ? ? ? A . n A 1 244 ILE 244 1182 ? ? ? A . n A 1 245 PHE 245 1183 ? ? ? A . n A 1 246 ARG 246 1184 ? ? ? A . n A 1 247 LYS 247 1185 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1201 1 HOH HOH A . B 2 HOH 2 1202 2 HOH HOH A . B 2 HOH 3 1203 3 HOH HOH A . B 2 HOH 4 1204 4 HOH HOH A . B 2 HOH 5 1205 5 HOH HOH A . B 2 HOH 6 1206 6 HOH HOH A . B 2 HOH 7 1207 7 HOH HOH A . B 2 HOH 8 1208 8 HOH HOH A . B 2 HOH 9 1209 9 HOH HOH A . B 2 HOH 10 1210 10 HOH HOH A . B 2 HOH 11 1211 11 HOH HOH A . B 2 HOH 12 1212 12 HOH HOH A . B 2 HOH 13 1213 13 HOH HOH A . B 2 HOH 14 1214 14 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-27 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 REFMAC phasing . ? 4 # _pdbx_entry_details.entry_id 4M9I _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS PROTEIN IS A FUSION PROTEIN CONTAINING RESIDUES 43-95 FROM DENGUE VIRUS NS2B, A GGGGSGGGG LINKER AND RESIDUES IN 1-185 FROM NS3. SIX EXTRA RESIDUES GSHMLE REMAINING AFTER THROMBIN CLEAVAGE ARE ATTACHED TO THE N-TERMINUS. THE OVERALL ARRANGEMENT OF THE FUSION PROTEIN IS GSHMLE-NS2B43THRU95-GGGGSGGGG-NS31THRU185. IN THE PDB COORDINATES, THE NS2B REGION HAS RESIDUE NUMBERS 43-95, RESIDUE 96 IS FROM THE GGGGSGGG LINKER. THE REMAINDER OF THE LINKER AND THE FIRST 17 RESIDUES FROM NS3B ARE DISORDERED IN THIS STRUCTURE. THE NS3 REGION HAS RESIDUE NUMBERS 1018-1171. THOSE NUMBERS CORRESPOND TO RESIDUES IDENTIFIED AS NS3B 18 TO 171 IN THE MANUSCRIPT. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE2 A TRP 1050 ? ? CD2 A TRP 1050 ? ? 1.482 1.409 0.073 0.012 N 2 1 CG A HIS 1060 ? ? CD2 A HIS 1060 ? ? 1.417 1.354 0.063 0.009 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 56 ? ? -130.81 -31.20 2 1 ASP A 1020 ? ? -38.62 138.34 3 1 ARG A 1054 ? ? 38.21 51.99 4 1 THR A 1120 ? ? 174.26 -9.38 5 1 SER A 1158 ? ? -72.56 32.61 6 1 ALA A 1166 ? ? -9.74 -85.44 7 1 THR A 1168 ? ? -64.41 95.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 48 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 48 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 48 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 48 ? OE2 ? A GLU 6 OE2 5 1 Y 1 A GLU 63 ? CD ? A GLU 21 CD 6 1 Y 1 A GLU 63 ? OE1 ? A GLU 21 OE1 7 1 Y 1 A GLU 63 ? OE2 ? A GLU 21 OE2 8 1 Y 1 A LYS 1073 ? CG ? A LYS 135 CG 9 1 Y 1 A LYS 1073 ? CD ? A LYS 135 CD 10 1 Y 1 A LYS 1073 ? CE ? A LYS 135 CE 11 1 Y 1 A LYS 1073 ? NZ ? A LYS 135 NZ 12 1 Y 1 A LYS 1090 ? CG ? A LYS 152 CG 13 1 Y 1 A LYS 1090 ? CD ? A LYS 152 CD 14 1 Y 1 A LYS 1090 ? CE ? A LYS 152 CE 15 1 Y 1 A LYS 1090 ? NZ ? A LYS 152 NZ 16 1 Y 1 A ARG 1157 ? CG ? A ARG 219 CG 17 1 Y 1 A ARG 1157 ? CD ? A ARG 219 CD 18 1 Y 1 A ARG 1157 ? NE ? A ARG 219 NE 19 1 Y 1 A ARG 1157 ? CZ ? A ARG 219 CZ 20 1 Y 1 A ARG 1157 ? NH1 ? A ARG 219 NH1 21 1 Y 1 A ARG 1157 ? NH2 ? A ARG 219 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 77 ? A THR 35 2 1 Y 1 A ILE 78 ? A ILE 36 3 1 Y 1 A SER 79 ? A SER 37 4 1 Y 1 A GLU 80 ? A GLU 38 5 1 Y 1 A ASP 81 ? A ASP 39 6 1 Y 1 A GLY 82 ? A GLY 40 7 1 Y 1 A SER 83 ? A SER 41 8 1 Y 1 A MET 84 ? A MET 42 9 1 Y 1 A GLY 993 ? A GLY 55 10 1 Y 1 A GLY 994 ? A GLY 56 11 1 Y 1 A GLY 995 ? A GLY 57 12 1 Y 1 A SER 996 ? A SER 58 13 1 Y 1 A GLY 997 ? A GLY 59 14 1 Y 1 A GLY 998 ? A GLY 60 15 1 Y 1 A GLY 999 ? A GLY 61 16 1 Y 1 A GLY 1000 ? A GLY 62 17 1 Y 1 A ALA 1001 ? A ALA 63 18 1 Y 1 A GLY 1002 ? A GLY 64 19 1 Y 1 A VAL 1003 ? A VAL 65 20 1 Y 1 A LEU 1004 ? A LEU 66 21 1 Y 1 A TRP 1005 ? A TRP 67 22 1 Y 1 A ASP 1006 ? A ASP 68 23 1 Y 1 A VAL 1007 ? A VAL 69 24 1 Y 1 A PRO 1008 ? A PRO 70 25 1 Y 1 A SER 1009 ? A SER 71 26 1 Y 1 A PRO 1010 ? A PRO 72 27 1 Y 1 A PRO 1011 ? A PRO 73 28 1 Y 1 A PRO 1012 ? A PRO 74 29 1 Y 1 A VAL 1013 ? A VAL 75 30 1 Y 1 A GLY 1014 ? A GLY 76 31 1 Y 1 A LYS 1015 ? A LYS 77 32 1 Y 1 A ALA 1016 ? A ALA 78 33 1 Y 1 A GLU 1017 ? A GLU 79 34 1 Y 1 A LEU 1018 ? A LEU 80 35 1 Y 1 A ILE 1172 ? A ILE 234 36 1 Y 1 A GLU 1173 ? A GLU 235 37 1 Y 1 A ASP 1174 ? A ASP 236 38 1 Y 1 A ASN 1175 ? A ASN 237 39 1 Y 1 A PRO 1176 ? A PRO 238 40 1 Y 1 A GLU 1177 ? A GLU 239 41 1 Y 1 A ILE 1178 ? A ILE 240 42 1 Y 1 A GLU 1179 ? A GLU 241 43 1 Y 1 A ASP 1180 ? A ASP 242 44 1 Y 1 A ASP 1181 ? A ASP 243 45 1 Y 1 A ILE 1182 ? A ILE 244 46 1 Y 1 A PHE 1183 ? A PHE 245 47 1 Y 1 A ARG 1184 ? A ARG 246 48 1 Y 1 A LYS 1185 ? A LYS 247 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FOM _pdbx_initial_refinement_model.details ? #