data_4M9T # _entry.id 4M9T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4M9T pdb_00004m9t 10.2210/pdb4m9t/pdb RCSB RCSB081646 ? ? WWPDB D_1000081646 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FOM . unspecified PDB 3U1I . unspecified PDB 3U1J . unspecified PDB 4M9F . unspecified PDB 4M9I . unspecified PDB 4M9K . unspecified PDB 4M9M . unspecified # _pdbx_database_status.entry_id 4M9T _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-08-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bell, J.A.' 1 'Yildiz, M.' 2 'Hardy, J.A.' 3 # _citation.id primary _citation.title 'Allosteric Inhibition of the NS2B-NS3 Protease from Dengue Virus.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 8 _citation.page_first 2744 _citation.page_last 2752 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24164286 _citation.pdbx_database_id_DOI 10.1021/cb400612h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yildiz, M.' 1 ? primary 'Ghosh, S.' 2 ? primary 'Bell, J.A.' 3 ? primary 'Sherman, W.' 4 ? primary 'Hardy, J.A.' 5 ? # _cell.entry_id 4M9T _cell.length_a 61.394 _cell.length_b 62.090 _cell.length_c 114.347 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4M9T _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NS2B-NS3 protease' 26360.479 1 ? A125C 'UNP RESIDUES 1394-1440, 1476-1660' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMLEADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTLGGGGSGGGGAGVLWDVPSPPPVGKAEL EDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVL ALEPGKNPRAVQTKPGLFKTNTGTIGCVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIANTEKSIEDNPEI EDDIFRK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMLEADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTLGGGGSGGGGAGVLWDVPSPPPVGKAEL EDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVL ALEPGKNPRAVQTKPGLFKTNTGTIGCVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGAYVSAIANTEKSIEDNPEI EDDIFRK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 LEU n 1 10 GLU n 1 11 LEU n 1 12 GLU n 1 13 ARG n 1 14 ALA n 1 15 ALA n 1 16 ASP n 1 17 VAL n 1 18 ARG n 1 19 TRP n 1 20 GLU n 1 21 GLU n 1 22 GLN n 1 23 ALA n 1 24 GLU n 1 25 ILE n 1 26 SER n 1 27 GLY n 1 28 SER n 1 29 SER n 1 30 PRO n 1 31 ILE n 1 32 LEU n 1 33 SER n 1 34 ILE n 1 35 THR n 1 36 ILE n 1 37 SER n 1 38 GLU n 1 39 ASP n 1 40 GLY n 1 41 SER n 1 42 MET n 1 43 SER n 1 44 ILE n 1 45 LYS n 1 46 ASN n 1 47 GLU n 1 48 GLU n 1 49 GLU n 1 50 GLU n 1 51 GLN n 1 52 THR n 1 53 LEU n 1 54 GLY n 1 55 GLY n 1 56 GLY n 1 57 GLY n 1 58 SER n 1 59 GLY n 1 60 GLY n 1 61 GLY n 1 62 GLY n 1 63 ALA n 1 64 GLY n 1 65 VAL n 1 66 LEU n 1 67 TRP n 1 68 ASP n 1 69 VAL n 1 70 PRO n 1 71 SER n 1 72 PRO n 1 73 PRO n 1 74 PRO n 1 75 VAL n 1 76 GLY n 1 77 LYS n 1 78 ALA n 1 79 GLU n 1 80 LEU n 1 81 GLU n 1 82 ASP n 1 83 GLY n 1 84 ALA n 1 85 TYR n 1 86 ARG n 1 87 ILE n 1 88 LYS n 1 89 GLN n 1 90 LYS n 1 91 GLY n 1 92 ILE n 1 93 LEU n 1 94 GLY n 1 95 TYR n 1 96 SER n 1 97 GLN n 1 98 ILE n 1 99 GLY n 1 100 ALA n 1 101 GLY n 1 102 VAL n 1 103 TYR n 1 104 LYS n 1 105 GLU n 1 106 GLY n 1 107 THR n 1 108 PHE n 1 109 HIS n 1 110 THR n 1 111 MET n 1 112 TRP n 1 113 HIS n 1 114 VAL n 1 115 THR n 1 116 ARG n 1 117 GLY n 1 118 ALA n 1 119 VAL n 1 120 LEU n 1 121 MET n 1 122 HIS n 1 123 LYS n 1 124 GLY n 1 125 LYS n 1 126 ARG n 1 127 ILE n 1 128 GLU n 1 129 PRO n 1 130 SER n 1 131 TRP n 1 132 ALA n 1 133 ASP n 1 134 VAL n 1 135 LYS n 1 136 LYS n 1 137 ASP n 1 138 LEU n 1 139 ILE n 1 140 SER n 1 141 TYR n 1 142 GLY n 1 143 GLY n 1 144 GLY n 1 145 TRP n 1 146 LYS n 1 147 LEU n 1 148 GLU n 1 149 GLY n 1 150 GLU n 1 151 TRP n 1 152 LYS n 1 153 GLU n 1 154 GLY n 1 155 GLU n 1 156 GLU n 1 157 VAL n 1 158 GLN n 1 159 VAL n 1 160 LEU n 1 161 ALA n 1 162 LEU n 1 163 GLU n 1 164 PRO n 1 165 GLY n 1 166 LYS n 1 167 ASN n 1 168 PRO n 1 169 ARG n 1 170 ALA n 1 171 VAL n 1 172 GLN n 1 173 THR n 1 174 LYS n 1 175 PRO n 1 176 GLY n 1 177 LEU n 1 178 PHE n 1 179 LYS n 1 180 THR n 1 181 ASN n 1 182 THR n 1 183 GLY n 1 184 THR n 1 185 ILE n 1 186 GLY n 1 187 CYS n 1 188 VAL n 1 189 SER n 1 190 LEU n 1 191 ASP n 1 192 PHE n 1 193 SER n 1 194 PRO n 1 195 GLY n 1 196 THR n 1 197 SER n 1 198 GLY n 1 199 SER n 1 200 PRO n 1 201 ILE n 1 202 VAL n 1 203 ASP n 1 204 LYS n 1 205 LYS n 1 206 GLY n 1 207 LYS n 1 208 VAL n 1 209 VAL n 1 210 GLY n 1 211 LEU n 1 212 TYR n 1 213 GLY n 1 214 ASN n 1 215 GLY n 1 216 VAL n 1 217 VAL n 1 218 THR n 1 219 ARG n 1 220 SER n 1 221 GLY n 1 222 ALA n 1 223 TYR n 1 224 VAL n 1 225 SER n 1 226 ALA n 1 227 ILE n 1 228 ALA n 1 229 ASN n 1 230 THR n 1 231 GLU n 1 232 LYS n 1 233 SER n 1 234 ILE n 1 235 GLU n 1 236 ASP n 1 237 ASN n 1 238 PRO n 1 239 GLU n 1 240 ILE n 1 241 GLU n 1 242 ASP n 1 243 ASP n 1 244 ILE n 1 245 PHE n 1 246 ARG n 1 247 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 7 53 ? ? NS2B-NS3 ? ? ? ? ? ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? pET15b ? ? ? ? ? ? 1 2 sample ? 63 239 ? ? NS2B-NS3 ? ? ? ? ? ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? pET15b ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q91H74_9FLAV Q91H74 1 ADLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEEEEQTL 1394 ? 2 UNP Q91H74_9FLAV Q91H74 1 ;AGVLWDVPSPPPVGKAELEDGAYRIKQKGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHKGKRIEPSWADVKKDLISYG GGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIVDKKGKVVGLYGNGVVTRSGA YVSAIAQTEKSIEDNPEIEDDIFRK ; 1476 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4M9T A 7 ? 53 ? Q91H74 1394 ? 1440 ? 49 95 2 2 4M9T A 63 ? 239 ? Q91H74 1476 ? 1652 ? 1001 1177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4M9T GLY A 1 ? UNP Q91H74 ? ? 'expression tag' 43 1 1 4M9T SER A 2 ? UNP Q91H74 ? ? 'expression tag' 44 2 1 4M9T HIS A 3 ? UNP Q91H74 ? ? 'expression tag' 45 3 1 4M9T MET A 4 ? UNP Q91H74 ? ? 'expression tag' 46 4 1 4M9T LEU A 5 ? UNP Q91H74 ? ? 'expression tag' 47 5 1 4M9T GLU A 6 ? UNP Q91H74 ? ? 'expression tag' 48 6 1 4M9T GLY A 54 ? UNP Q91H74 ? ? linker 96 7 2 4M9T GLY A 55 ? UNP Q91H74 ? ? linker 993 8 2 4M9T GLY A 56 ? UNP Q91H74 ? ? linker 994 9 2 4M9T GLY A 57 ? UNP Q91H74 ? ? linker 995 10 2 4M9T SER A 58 ? UNP Q91H74 ? ? linker 996 11 2 4M9T GLY A 59 ? UNP Q91H74 ? ? linker 997 12 2 4M9T GLY A 60 ? UNP Q91H74 ? ? linker 998 13 2 4M9T GLY A 61 ? UNP Q91H74 ? ? linker 999 14 2 4M9T GLY A 62 ? UNP Q91H74 ? ? linker 1000 15 2 4M9T CYS A 187 ? UNP Q91H74 ALA 1600 'engineered mutation' 1125 16 2 4M9T ASN A 229 ? UNP Q91H74 GLN 1642 conflict 1167 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4M9T _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;40% PEG200, 0.1 M Acetic acid, pH 5.5. Crystals were soaked in 40% PEG200, 0.1 M Tris pH 8.5, 5 mM 5,5'-dithiobis-(2-nitrobenzoic acid) (DTNB), VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-11-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 4M9T _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 1.74 _reflns.d_resolution_low 43.7 _reflns.number_all 19456 _reflns.number_obs 19455 _reflns.percent_possible_obs 85.3 _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_Rsym_value 0.114 _reflns.pdbx_netI_over_sigmaI 30.1 _reflns.B_iso_Wilson_estimate 32.2 _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 85.3 _reflns_shell.Rmerge_I_obs 0.114 _reflns_shell.meanI_over_sigI_obs 1.85 _reflns_shell.pdbx_Rsym_value 0.114 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.number_unique_all 19456 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4M9T _refine.ls_d_res_high 1.74 _refine.ls_d_res_low 43.66 _refine.pdbx_ls_sigma_F 10000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 85.0 _refine.ls_number_reflns_obs 18265 _refine.ls_number_reflns_all 19455 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.details ;This structure was solved in the presence of the small-molecule NS2B-NS3pro inhibitor DTNB, however density for DTNB could not be observed in the structure. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.215 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.241 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 996 _refine.ls_R_factor_R_free_error 0.004 _refine.B_iso_mean 28.8415 _refine.solvent_model_param_bsol 48.0016 _refine.solvent_model_param_ksol 0.42 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -0.141 _refine.aniso_B[2][2] 0.337 _refine.aniso_B[3][3] -0.196 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2FOM _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 91.970 _refine.B_iso_min 4.770 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I 10000 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4M9T _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1535 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1566 _refine_hist.d_res_high 1.74 _refine_hist.d_res_low 43.66 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id o_bond_d 0.013 ? ? ? ? 'X-RAY DIFFRACTION' o_angle_deg 1.915 ? ? ? ? 'X-RAY DIFFRACTION' o_mcbond_it 7.02 1.50 ? ? ? 'X-RAY DIFFRACTION' o_mcangle_it 7.88 2.00 ? ? ? 'X-RAY DIFFRACTION' o_scbond_it 11.98 2.00 ? ? ? 'X-RAY DIFFRACTION' o_scangle_it 13.44 2.50 ? ? ? 'X-RAY DIFFRACTION' o_improper_angle_d 0.423 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.74 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_obs 2056 _refine_ls_shell.number_reflns_R_free 111 _refine_ls_shell.R_factor_R_work 0.332 _refine_ls_shell.R_factor_R_free 0.316 _refine_ls_shell.R_factor_R_free_error 0.013 _refine_ls_shell.percent_reflns_obs 85.0 _refine_ls_shell.percent_reflns_R_free 5.4 _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.number_reflns_R_work 1945 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4M9T _struct.title 'NS2B-NS3 protease from dengue virus in the presence of DTNB, a covalent allosteric inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4M9T _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'serine protease, allosteric inhibition, dengue virus protease, trypsin-like protease, conformational flexibility, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 20 ? GLY A 27 ? GLU A 62 GLY A 69 1 ? 8 HELX_P HELX_P2 2 ASP A 39 ? SER A 43 ? ASP A 81 SER A 85 5 ? 5 HELX_P HELX_P3 3 TRP A 112 ? ARG A 116 ? TRP A 1050 ARG A 1054 1 ? 5 HELX_P HELX_P4 4 SER A 193 ? SER A 197 ? SER A 1131 SER A 1135 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 125 ? ILE A 127 ? LYS A 1063 ILE A 1065 A 2 LEU A 120 ? HIS A 122 ? LEU A 1058 HIS A 1060 A 3 LEU A 9 ? ALA A 15 ? LEU A 51 ALA A 57 A 4 GLY A 83 ? GLY A 91 ? GLY A 1021 GLY A 1029 A 5 GLY A 94 ? LYS A 104 ? GLY A 1032 LYS A 1042 A 6 THR A 107 ? MET A 111 ? THR A 1045 MET A 1049 A 7 LEU A 138 ? TYR A 141 ? LEU A 1076 TYR A 1079 A 8 PRO A 129 ? ASP A 133 ? PRO A 1067 ASP A 1071 B 1 SER A 28 ? PRO A 30 ? SER A 70 PRO A 72 B 2 ARG A 169 ? THR A 173 ? ARG A 1107 THR A 1111 B 3 VAL A 157 ? ALA A 161 ? VAL A 1095 ALA A 1099 B 4 PRO A 200 ? VAL A 202 ? PRO A 1138 VAL A 1140 B 5 VAL A 208 ? VAL A 217 ? VAL A 1146 VAL A 1155 B 6 TYR A 223 ? ALA A 228 ? TYR A 1161 ALA A 1166 B 7 GLY A 183 ? VAL A 188 ? GLY A 1121 VAL A 1126 B 8 GLY A 176 ? THR A 180 ? GLY A 1114 THR A 1118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 127 ? O ILE A 1065 N LEU A 120 ? N LEU A 1058 A 2 3 O MET A 121 ? O MET A 1059 N LEU A 9 ? N LEU A 51 A 3 4 N ALA A 15 ? N ALA A 57 O ALA A 84 ? O ALA A 1022 A 4 5 N GLY A 83 ? N GLY A 1021 O TYR A 103 ? O TYR A 1041 A 5 6 N LYS A 104 ? N LYS A 1042 O THR A 107 ? O THR A 1045 A 6 7 N PHE A 108 ? N PHE A 1046 O TYR A 141 ? O TYR A 1079 A 7 8 O SER A 140 ? O SER A 1078 N SER A 130 ? N SER A 1068 B 1 2 N SER A 29 ? N SER A 71 O ALA A 170 ? O ALA A 1108 B 2 3 O THR A 173 ? O THR A 1111 N VAL A 157 ? N VAL A 1095 B 3 4 N LEU A 160 ? N LEU A 1098 O PRO A 200 ? O PRO A 1138 B 4 5 N ILE A 201 ? N ILE A 1139 O GLY A 210 ? O GLY A 1148 B 5 6 N VAL A 216 ? N VAL A 1154 O VAL A 224 ? O VAL A 1162 B 6 7 O SER A 225 ? O SER A 1163 N VAL A 188 ? N VAL A 1126 B 7 8 O ILE A 185 ? O ILE A 1123 N PHE A 178 ? N PHE A 1116 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 1201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 1201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS A 104 ? LYS A 1042 . ? 1_555 ? 2 AC1 3 GLU A 148 ? GLU A 1086 . ? 1_555 ? 3 AC1 3 VAL A 208 ? VAL A 1146 . ? 1_555 ? # _atom_sites.entry_id 4M9T _atom_sites.fract_transf_matrix[1][1] 0.016288 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016106 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008745 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 43 ? ? ? A . n A 1 2 SER 2 44 ? ? ? A . n A 1 3 HIS 3 45 ? ? ? A . n A 1 4 MET 4 46 ? ? ? A . n A 1 5 LEU 5 47 ? ? ? A . n A 1 6 GLU 6 48 48 GLU GLU A . n A 1 7 ALA 7 49 49 ALA ALA A . n A 1 8 ASP 8 50 50 ASP ASP A . n A 1 9 LEU 9 51 51 LEU LEU A . n A 1 10 GLU 10 52 52 GLU GLU A . n A 1 11 LEU 11 53 53 LEU LEU A . n A 1 12 GLU 12 54 54 GLU GLU A . n A 1 13 ARG 13 55 55 ARG ARG A . n A 1 14 ALA 14 56 56 ALA ALA A . n A 1 15 ALA 15 57 57 ALA ALA A . n A 1 16 ASP 16 58 58 ASP ASP A . n A 1 17 VAL 17 59 59 VAL VAL A . n A 1 18 ARG 18 60 60 ARG ARG A . n A 1 19 TRP 19 61 61 TRP TRP A . n A 1 20 GLU 20 62 62 GLU GLU A . n A 1 21 GLU 21 63 63 GLU GLU A . n A 1 22 GLN 22 64 64 GLN GLN A . n A 1 23 ALA 23 65 65 ALA ALA A . n A 1 24 GLU 24 66 66 GLU GLU A . n A 1 25 ILE 25 67 67 ILE ILE A . n A 1 26 SER 26 68 68 SER SER A . n A 1 27 GLY 27 69 69 GLY GLY A . n A 1 28 SER 28 70 70 SER SER A . n A 1 29 SER 29 71 71 SER SER A . n A 1 30 PRO 30 72 72 PRO PRO A . n A 1 31 ILE 31 73 73 ILE ILE A . n A 1 32 LEU 32 74 74 LEU LEU A . n A 1 33 SER 33 75 75 SER SER A . n A 1 34 ILE 34 76 76 ILE ILE A . n A 1 35 THR 35 77 77 THR THR A . n A 1 36 ILE 36 78 78 ILE ILE A . n A 1 37 SER 37 79 79 SER SER A . n A 1 38 GLU 38 80 80 GLU GLU A . n A 1 39 ASP 39 81 81 ASP ASP A . n A 1 40 GLY 40 82 82 GLY GLY A . n A 1 41 SER 41 83 83 SER SER A . n A 1 42 MET 42 84 84 MET MET A . n A 1 43 SER 43 85 85 SER SER A . n A 1 44 ILE 44 86 86 ILE ILE A . n A 1 45 LYS 45 87 87 LYS LYS A . n A 1 46 ASN 46 88 88 ASN ASN A . n A 1 47 GLU 47 89 89 GLU GLU A . n A 1 48 GLU 48 90 90 GLU GLU A . n A 1 49 GLU 49 91 91 GLU GLU A . n A 1 50 GLU 50 92 92 GLU GLU A . n A 1 51 GLN 51 93 93 GLN GLN A . n A 1 52 THR 52 94 94 THR THR A . n A 1 53 LEU 53 95 95 LEU LEU A . n A 1 54 GLY 54 96 96 GLY GLY A . n A 1 55 GLY 55 993 ? ? ? A . n A 1 56 GLY 56 994 ? ? ? A . n A 1 57 GLY 57 995 ? ? ? A . n A 1 58 SER 58 996 ? ? ? A . n A 1 59 GLY 59 997 ? ? ? A . n A 1 60 GLY 60 998 ? ? ? A . n A 1 61 GLY 61 999 ? ? ? A . n A 1 62 GLY 62 1000 ? ? ? A . n A 1 63 ALA 63 1001 ? ? ? A . n A 1 64 GLY 64 1002 ? ? ? A . n A 1 65 VAL 65 1003 ? ? ? A . n A 1 66 LEU 66 1004 ? ? ? A . n A 1 67 TRP 67 1005 ? ? ? A . n A 1 68 ASP 68 1006 ? ? ? A . n A 1 69 VAL 69 1007 ? ? ? A . n A 1 70 PRO 70 1008 ? ? ? A . n A 1 71 SER 71 1009 ? ? ? A . n A 1 72 PRO 72 1010 ? ? ? A . n A 1 73 PRO 73 1011 ? ? ? A . n A 1 74 PRO 74 1012 ? ? ? A . n A 1 75 VAL 75 1013 ? ? ? A . n A 1 76 GLY 76 1014 ? ? ? A . n A 1 77 LYS 77 1015 ? ? ? A . n A 1 78 ALA 78 1016 ? ? ? A . n A 1 79 GLU 79 1017 17 GLU GLU A . n A 1 80 LEU 80 1018 18 LEU LEU A . n A 1 81 GLU 81 1019 19 GLU GLU A . n A 1 82 ASP 82 1020 20 ASP ASP A . n A 1 83 GLY 83 1021 21 GLY GLY A . n A 1 84 ALA 84 1022 22 ALA ALA A . n A 1 85 TYR 85 1023 23 TYR TYR A . n A 1 86 ARG 86 1024 24 ARG ARG A . n A 1 87 ILE 87 1025 25 ILE ILE A . n A 1 88 LYS 88 1026 26 LYS LYS A . n A 1 89 GLN 89 1027 27 GLN GLN A . n A 1 90 LYS 90 1028 28 LYS LYS A . n A 1 91 GLY 91 1029 29 GLY GLY A . n A 1 92 ILE 92 1030 30 ILE ILE A . n A 1 93 LEU 93 1031 31 LEU LEU A . n A 1 94 GLY 94 1032 32 GLY GLY A . n A 1 95 TYR 95 1033 33 TYR TYR A . n A 1 96 SER 96 1034 34 SER SER A . n A 1 97 GLN 97 1035 35 GLN GLN A . n A 1 98 ILE 98 1036 36 ILE ILE A . n A 1 99 GLY 99 1037 37 GLY GLY A . n A 1 100 ALA 100 1038 38 ALA ALA A . n A 1 101 GLY 101 1039 39 GLY GLY A . n A 1 102 VAL 102 1040 40 VAL VAL A . n A 1 103 TYR 103 1041 41 TYR TYR A . n A 1 104 LYS 104 1042 42 LYS LYS A . n A 1 105 GLU 105 1043 43 GLU GLU A . n A 1 106 GLY 106 1044 44 GLY GLY A . n A 1 107 THR 107 1045 45 THR THR A . n A 1 108 PHE 108 1046 46 PHE PHE A . n A 1 109 HIS 109 1047 47 HIS HIS A . n A 1 110 THR 110 1048 48 THR THR A . n A 1 111 MET 111 1049 49 MET MET A . n A 1 112 TRP 112 1050 50 TRP TRP A . n A 1 113 HIS 113 1051 51 HIS HIS A . n A 1 114 VAL 114 1052 52 VAL VAL A . n A 1 115 THR 115 1053 53 THR THR A . n A 1 116 ARG 116 1054 54 ARG ARG A . n A 1 117 GLY 117 1055 55 GLY GLY A . n A 1 118 ALA 118 1056 56 ALA ALA A . n A 1 119 VAL 119 1057 57 VAL VAL A . n A 1 120 LEU 120 1058 58 LEU LEU A . n A 1 121 MET 121 1059 59 MET MET A . n A 1 122 HIS 122 1060 60 HIS HIS A . n A 1 123 LYS 123 1061 61 LYS LYS A . n A 1 124 GLY 124 1062 62 GLY GLY A . n A 1 125 LYS 125 1063 63 LYS LYS A . n A 1 126 ARG 126 1064 64 ARG ARG A . n A 1 127 ILE 127 1065 65 ILE ILE A . n A 1 128 GLU 128 1066 66 GLU GLU A . n A 1 129 PRO 129 1067 67 PRO PRO A . n A 1 130 SER 130 1068 68 SER SER A . n A 1 131 TRP 131 1069 69 TRP TRP A . n A 1 132 ALA 132 1070 70 ALA ALA A . n A 1 133 ASP 133 1071 71 ASP ASP A . n A 1 134 VAL 134 1072 72 VAL VAL A . n A 1 135 LYS 135 1073 73 LYS LYS A . n A 1 136 LYS 136 1074 74 LYS LYS A . n A 1 137 ASP 137 1075 75 ASP ASP A . n A 1 138 LEU 138 1076 76 LEU LEU A . n A 1 139 ILE 139 1077 77 ILE ILE A . n A 1 140 SER 140 1078 78 SER SER A . n A 1 141 TYR 141 1079 79 TYR TYR A . n A 1 142 GLY 142 1080 80 GLY GLY A . n A 1 143 GLY 143 1081 81 GLY GLY A . n A 1 144 GLY 144 1082 82 GLY GLY A . n A 1 145 TRP 145 1083 83 TRP TRP A . n A 1 146 LYS 146 1084 84 LYS LYS A . n A 1 147 LEU 147 1085 85 LEU LEU A . n A 1 148 GLU 148 1086 86 GLU GLU A . n A 1 149 GLY 149 1087 87 GLY GLY A . n A 1 150 GLU 150 1088 88 GLU GLU A . n A 1 151 TRP 151 1089 89 TRP TRP A . n A 1 152 LYS 152 1090 90 LYS LYS A . n A 1 153 GLU 153 1091 91 GLU GLU A . n A 1 154 GLY 154 1092 92 GLY GLY A . n A 1 155 GLU 155 1093 93 GLU GLU A . n A 1 156 GLU 156 1094 94 GLU GLU A . n A 1 157 VAL 157 1095 95 VAL VAL A . n A 1 158 GLN 158 1096 96 GLN GLN A . n A 1 159 VAL 159 1097 97 VAL VAL A . n A 1 160 LEU 160 1098 98 LEU LEU A . n A 1 161 ALA 161 1099 99 ALA ALA A . n A 1 162 LEU 162 1100 100 LEU LEU A . n A 1 163 GLU 163 1101 101 GLU GLU A . n A 1 164 PRO 164 1102 102 PRO PRO A . n A 1 165 GLY 165 1103 103 GLY GLY A . n A 1 166 LYS 166 1104 104 LYS LYS A . n A 1 167 ASN 167 1105 105 ASN ASN A . n A 1 168 PRO 168 1106 106 PRO PRO A . n A 1 169 ARG 169 1107 107 ARG ARG A . n A 1 170 ALA 170 1108 108 ALA ALA A . n A 1 171 VAL 171 1109 109 VAL VAL A . n A 1 172 GLN 172 1110 110 GLN GLN A . n A 1 173 THR 173 1111 111 THR THR A . n A 1 174 LYS 174 1112 112 LYS LYS A . n A 1 175 PRO 175 1113 113 PRO PRO A . n A 1 176 GLY 176 1114 114 GLY GLY A . n A 1 177 LEU 177 1115 115 LEU LEU A . n A 1 178 PHE 178 1116 116 PHE PHE A . n A 1 179 LYS 179 1117 117 LYS LYS A . n A 1 180 THR 180 1118 118 THR THR A . n A 1 181 ASN 181 1119 119 ASN ASN A . n A 1 182 THR 182 1120 120 THR THR A . n A 1 183 GLY 183 1121 121 GLY GLY A . n A 1 184 THR 184 1122 122 THR THR A . n A 1 185 ILE 185 1123 123 ILE ILE A . n A 1 186 GLY 186 1124 124 GLY GLY A . n A 1 187 CYS 187 1125 125 CYS CYS A . n A 1 188 VAL 188 1126 126 VAL VAL A . n A 1 189 SER 189 1127 127 SER SER A . n A 1 190 LEU 190 1128 128 LEU LEU A . n A 1 191 ASP 191 1129 129 ASP ASP A . n A 1 192 PHE 192 1130 130 PHE PHE A . n A 1 193 SER 193 1131 131 SER SER A . n A 1 194 PRO 194 1132 132 PRO PRO A . n A 1 195 GLY 195 1133 133 GLY GLY A . n A 1 196 THR 196 1134 134 THR THR A . n A 1 197 SER 197 1135 135 SER SER A . n A 1 198 GLY 198 1136 136 GLY GLY A . n A 1 199 SER 199 1137 137 SER SER A . n A 1 200 PRO 200 1138 138 PRO PRO A . n A 1 201 ILE 201 1139 139 ILE ILE A . n A 1 202 VAL 202 1140 140 VAL VAL A . n A 1 203 ASP 203 1141 141 ASP ASP A . n A 1 204 LYS 204 1142 142 LYS LYS A . n A 1 205 LYS 205 1143 143 LYS LYS A . n A 1 206 GLY 206 1144 144 GLY GLY A . n A 1 207 LYS 207 1145 145 LYS LYS A . n A 1 208 VAL 208 1146 146 VAL VAL A . n A 1 209 VAL 209 1147 147 VAL VAL A . n A 1 210 GLY 210 1148 148 GLY GLY A . n A 1 211 LEU 211 1149 149 LEU LEU A . n A 1 212 TYR 212 1150 150 TYR TYR A . n A 1 213 GLY 213 1151 151 GLY GLY A . n A 1 214 ASN 214 1152 152 ASN ASN A . n A 1 215 GLY 215 1153 153 GLY GLY A . n A 1 216 VAL 216 1154 154 VAL VAL A . n A 1 217 VAL 217 1155 155 VAL VAL A . n A 1 218 THR 218 1156 156 THR THR A . n A 1 219 ARG 219 1157 157 ARG ARG A . n A 1 220 SER 220 1158 158 SER SER A . n A 1 221 GLY 221 1159 159 GLY GLY A . n A 1 222 ALA 222 1160 160 ALA ALA A . n A 1 223 TYR 223 1161 161 TYR TYR A . n A 1 224 VAL 224 1162 162 VAL VAL A . n A 1 225 SER 225 1163 163 SER SER A . n A 1 226 ALA 226 1164 164 ALA ALA A . n A 1 227 ILE 227 1165 165 ILE ILE A . n A 1 228 ALA 228 1166 166 ALA ALA A . n A 1 229 ASN 229 1167 167 ASN ASN A . n A 1 230 THR 230 1168 168 THR THR A . n A 1 231 GLU 231 1169 169 GLU GLU A . n A 1 232 LYS 232 1170 ? ? ? A . n A 1 233 SER 233 1171 ? ? ? A . n A 1 234 ILE 234 1172 ? ? ? A . n A 1 235 GLU 235 1173 ? ? ? A . n A 1 236 ASP 236 1174 ? ? ? A . n A 1 237 ASN 237 1175 ? ? ? A . n A 1 238 PRO 238 1176 ? ? ? A . n A 1 239 GLU 239 1177 ? ? ? A . n A 1 240 ILE 240 1178 ? ? ? A . n A 1 241 GLU 241 1179 ? ? ? A . n A 1 242 ASP 242 1180 ? ? ? A . n A 1 243 ASP 243 1181 ? ? ? A . n A 1 244 ILE 244 1182 ? ? ? A . n A 1 245 PHE 245 1183 ? ? ? A . n A 1 246 ARG 246 1184 ? ? ? A . n A 1 247 LYS 247 1185 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1201 201 CL CL A . C 3 HOH 1 1301 1 HOH HOH A . C 3 HOH 2 1302 2 HOH HOH A . C 3 HOH 3 1303 3 HOH HOH A . C 3 HOH 4 1304 4 HOH HOH A . C 3 HOH 5 1305 5 HOH HOH A . C 3 HOH 6 1306 6 HOH HOH A . C 3 HOH 7 1307 7 HOH HOH A . C 3 HOH 8 1308 8 HOH HOH A . C 3 HOH 9 1309 9 HOH HOH A . C 3 HOH 10 1310 10 HOH HOH A . C 3 HOH 11 1311 11 HOH HOH A . C 3 HOH 12 1312 12 HOH HOH A . C 3 HOH 13 1313 13 HOH HOH A . C 3 HOH 14 1314 14 HOH HOH A . C 3 HOH 15 1315 15 HOH HOH A . C 3 HOH 16 1316 16 HOH HOH A . C 3 HOH 17 1317 17 HOH HOH A . C 3 HOH 18 1318 18 HOH HOH A . C 3 HOH 19 1319 19 HOH HOH A . C 3 HOH 20 1320 20 HOH HOH A . C 3 HOH 21 1321 21 HOH HOH A . C 3 HOH 22 1322 22 HOH HOH A . C 3 HOH 23 1323 23 HOH HOH A . C 3 HOH 24 1324 24 HOH HOH A . C 3 HOH 25 1325 25 HOH HOH A . C 3 HOH 26 1326 26 HOH HOH A . C 3 HOH 27 1327 27 HOH HOH A . C 3 HOH 28 1328 28 HOH HOH A . C 3 HOH 29 1329 29 HOH HOH A . C 3 HOH 30 1330 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-27 2 'Structure model' 1 1 2013-12-04 3 'Structure model' 1 2 2014-02-05 4 'Structure model' 1 3 2017-08-02 5 'Structure model' 1 4 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' software 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_software.name' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 PRIME-X refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 4M9T _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS PROTEIN IS A FUSION PROTEIN CONTAINING RESIDUES 43-95 FROM DENGUE VIRUS NS2B, A GGGGSGGGG LINKER AND RESIDUES IN 1-185 FROM NS3. SIX EXTRA RESIDUES GSHMLE REMAINING AFTER THROMBIN CLEAVAGE ARE ATTACHED TO THE N-TERMINUS. THE OVERALL ARRANGEMENT OF THE FUSION PROTEIN IS GSHMLE-NS2B43THRU95-GGGGSGGGG-NS31THRU185. IN THE PDB COORDINATES, THE NS2B REGION HAS RESIDUE NUMBERS 43-95, RESIDUE 96 IS FROM THE GGGGSGGG LINKER. THE REMAINDER OF THE LINKER AND THE FIRST 17 RESIDUES FROM NS3B ARE DISORDERED IN THIS STRUCTURE. THE NS3 REGION HAS RESIDUE NUMBERS 1018-1171. THOSE NUMBERS CORRESPOND TO RESIDUES IDENTIFIED AS NS3B 18 TO 171 IN THE MANUSCRIPT. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 1051 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 1051 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.412 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.058 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 74 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -107.09 _pdbx_validate_torsion.psi 67.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 43 ? A GLY 1 2 1 Y 1 A SER 44 ? A SER 2 3 1 Y 1 A HIS 45 ? A HIS 3 4 1 Y 1 A MET 46 ? A MET 4 5 1 Y 1 A LEU 47 ? A LEU 5 6 1 Y 1 A GLY 993 ? A GLY 55 7 1 Y 1 A GLY 994 ? A GLY 56 8 1 Y 1 A GLY 995 ? A GLY 57 9 1 Y 1 A SER 996 ? A SER 58 10 1 Y 1 A GLY 997 ? A GLY 59 11 1 Y 1 A GLY 998 ? A GLY 60 12 1 Y 1 A GLY 999 ? A GLY 61 13 1 Y 1 A GLY 1000 ? A GLY 62 14 1 Y 1 A ALA 1001 ? A ALA 63 15 1 Y 1 A GLY 1002 ? A GLY 64 16 1 Y 1 A VAL 1003 ? A VAL 65 17 1 Y 1 A LEU 1004 ? A LEU 66 18 1 Y 1 A TRP 1005 ? A TRP 67 19 1 Y 1 A ASP 1006 ? A ASP 68 20 1 Y 1 A VAL 1007 ? A VAL 69 21 1 Y 1 A PRO 1008 ? A PRO 70 22 1 Y 1 A SER 1009 ? A SER 71 23 1 Y 1 A PRO 1010 ? A PRO 72 24 1 Y 1 A PRO 1011 ? A PRO 73 25 1 Y 1 A PRO 1012 ? A PRO 74 26 1 Y 1 A VAL 1013 ? A VAL 75 27 1 Y 1 A GLY 1014 ? A GLY 76 28 1 Y 1 A LYS 1015 ? A LYS 77 29 1 Y 1 A ALA 1016 ? A ALA 78 30 1 Y 1 A LYS 1170 ? A LYS 232 31 1 Y 1 A SER 1171 ? A SER 233 32 1 Y 1 A ILE 1172 ? A ILE 234 33 1 Y 1 A GLU 1173 ? A GLU 235 34 1 Y 1 A ASP 1174 ? A ASP 236 35 1 Y 1 A ASN 1175 ? A ASN 237 36 1 Y 1 A PRO 1176 ? A PRO 238 37 1 Y 1 A GLU 1177 ? A GLU 239 38 1 Y 1 A ILE 1178 ? A ILE 240 39 1 Y 1 A GLU 1179 ? A GLU 241 40 1 Y 1 A ASP 1180 ? A ASP 242 41 1 Y 1 A ASP 1181 ? A ASP 243 42 1 Y 1 A ILE 1182 ? A ILE 244 43 1 Y 1 A PHE 1183 ? A PHE 245 44 1 Y 1 A ARG 1184 ? A ARG 246 45 1 Y 1 A LYS 1185 ? A LYS 247 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FOM _pdbx_initial_refinement_model.details ? #