HEADER LYASE 15-AUG-13 4M9U TITLE THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE TITLE 2 ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 177416; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT_0897, PURK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG28 KEYWDS STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS KEYWDS 3 DISEASES, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 30-OCT-24 4M9U 1 REMARK SEQADV LINK REVDAT 1 28-AUG-13 4M9U 0 JRNL AUTH K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE JRNL TITL 2 CARBOXYLASE ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. JRNL TITL 3 TULARENSIS SCHU S4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9713 - 4.2646 1.00 2880 154 0.1767 0.2154 REMARK 3 2 4.2646 - 3.3857 1.00 2740 140 0.1404 0.1655 REMARK 3 3 3.3857 - 2.9580 1.00 2699 155 0.1698 0.1945 REMARK 3 4 2.9580 - 2.6876 1.00 2670 145 0.1804 0.2060 REMARK 3 5 2.6876 - 2.4950 1.00 2671 142 0.1843 0.2059 REMARK 3 6 2.4950 - 2.3480 1.00 2655 139 0.1678 0.1935 REMARK 3 7 2.3480 - 2.2304 1.00 2635 153 0.1563 0.2037 REMARK 3 8 2.2304 - 2.1333 1.00 2642 135 0.1469 0.1705 REMARK 3 9 2.1333 - 2.0512 1.00 2631 139 0.1482 0.1520 REMARK 3 10 2.0512 - 1.9804 1.00 2661 128 0.1528 0.1870 REMARK 3 11 1.9804 - 1.9185 1.00 2634 134 0.1572 0.2126 REMARK 3 12 1.9185 - 1.8637 1.00 2612 144 0.1669 0.1967 REMARK 3 13 1.8637 - 1.8146 1.00 2612 129 0.1750 0.1877 REMARK 3 14 1.8146 - 1.7703 1.00 2621 139 0.1742 0.2040 REMARK 3 15 1.7703 - 1.7301 1.00 2625 156 0.1777 0.1876 REMARK 3 16 1.7301 - 1.6933 1.00 2581 155 0.1769 0.2271 REMARK 3 17 1.6933 - 1.6594 1.00 2593 156 0.1853 0.2048 REMARK 3 18 1.6594 - 1.6281 1.00 2636 128 0.2056 0.2737 REMARK 3 19 1.6281 - 1.5990 0.99 2572 129 0.1984 0.2168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2904 REMARK 3 ANGLE : 1.087 3928 REMARK 3 CHIRALITY : 0.076 459 REMARK 3 PLANARITY : 0.004 511 REMARK 3 DIHEDRAL : 13.013 1050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5745 11.8191 16.8838 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1293 REMARK 3 T33: 0.1173 T12: -0.0047 REMARK 3 T13: 0.0075 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.8793 L22: 0.6423 REMARK 3 L33: 1.0864 L12: 0.3294 REMARK 3 L13: 0.6339 L23: 0.4529 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.1472 S13: -0.0770 REMARK 3 S21: 0.1043 S22: -0.0156 S23: -0.0087 REMARK 3 S31: 0.1470 S32: -0.0897 S33: -0.0330 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4861 28.2613 41.9514 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.4432 REMARK 3 T33: 0.2103 T12: 0.1330 REMARK 3 T13: -0.0256 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 2.1687 L22: 1.1171 REMARK 3 L33: 1.6309 L12: -0.1333 REMARK 3 L13: -0.7391 L23: -0.7801 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.2707 S13: 0.3456 REMARK 3 S21: 0.2056 S22: 0.1961 S23: 0.1879 REMARK 3 S31: -0.4380 S32: -0.4977 S33: -0.1104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3722 31.3409 16.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1120 REMARK 3 T33: 0.1292 T12: -0.0136 REMARK 3 T13: -0.0128 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.8068 L22: 0.5622 REMARK 3 L33: 1.1533 L12: -0.2891 REMARK 3 L13: 0.3748 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.1075 S13: 0.1754 REMARK 3 S21: 0.0923 S22: 0.0304 S23: -0.0716 REMARK 3 S31: -0.2116 S32: -0.0172 S33: 0.0434 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M SODIUM ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.83650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.65650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.65650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.75475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.65650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.65650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.91825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.65650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.65650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.75475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.65650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.65650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.91825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.83650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE CHAINA AND REMARK 300 ITS SYMMTRY-RELATED MOLECULE BY THE OPERATOR Y,X,-Z FORM A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 705 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 LEU A 369 REMARK 465 TYR A 370 REMARK 465 PHE A 371 REMARK 465 GLN A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 OE1 OE2 REMARK 470 LYS A 77 NZ REMARK 470 ASP A 129 OD1 OD2 REMARK 470 TYR A 144 CD1 CE1 CE2 CZ OH REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 LYS A 147 CD CE NZ REMARK 470 GLU A 156 CD OE1 OE2 REMARK 470 LYS A 160 CD CE NZ REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 LYS A 236 CE NZ REMARK 470 ASP A 253 CG OD1 OD2 REMARK 470 GLU A 254 CD OE1 OE2 REMARK 470 LYS A 313 CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 GLU A 346 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 142 -151.63 56.90 REMARK 500 ASP A 145 -121.03 57.45 REMARK 500 ASN A 258 -68.21 -92.42 REMARK 500 ARG A 331 132.63 -173.42 REMARK 500 ASP A 345 -158.85 -156.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 VAL A 40 O 95.3 REMARK 620 3 HOH A 501 O 100.1 75.9 REMARK 620 4 HOH A 550 O 170.6 77.2 72.7 REMARK 620 5 HOH A 729 O 107.2 101.5 152.6 80.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 95 O REMARK 620 2 GLU A 101 OE2 95.6 REMARK 620 3 ILE A 260 O 125.6 89.1 REMARK 620 4 HOH A 604 O 91.2 87.3 143.2 REMARK 620 5 HOH A 683 O 90.9 169.8 93.4 84.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP04645 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4MA5 RELATED DB: PDB REMARK 900 RELATED ID: 4MA0 RELATED DB: PDB REMARK 900 RELATED ID: 4MAM RELATED DB: PDB DBREF 4M9U A 1 365 UNP Q5NGE8 Q5NGE8_FRATT 1 365 SEQADV 4M9U ALA A 366 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U GLY A 367 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U ASN A 368 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U LEU A 369 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U TYR A 370 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U PHE A 371 UNP Q5NGE8 EXPRESSION TAG SEQADV 4M9U GLN A 372 UNP Q5NGE8 EXPRESSION TAG SEQRES 1 A 372 MSE LYS ILE GLY ILE ILE GLY ALA GLY GLN LEU ALA ARG SEQRES 2 A 372 MSE LEU SER LEU ALA GLY THR PRO LEU GLY LEU GLU PHE SEQRES 3 A 372 HIS CYS LEU GLY LYS ASN GLY ASP CYS ALA GLU GLU VAL SEQRES 4 A 372 VAL LYS THR VAL THR ASP ILE GLU LEU THR LYS VAL ASN SEQRES 5 A 372 ASP VAL VAL ALA TRP ALA LYS GLN PHE ASP VAL ILE THR SEQRES 6 A 372 PHE GLU ASN GLU ASN ILE SER HIS GLU LEU ILE LYS ALA SEQRES 7 A 372 ILE ASN HIS GLU VAL SER VAL TYR PRO SER ALA LYS ALA SEQRES 8 A 372 ILE ALA ILE SER GLN ASP ARG LEU LEU GLU LYS SER PHE SEQRES 9 A 372 MSE GLN ASP HIS GLY ILE ALA THR ALA LYS PHE VAL ASN SEQRES 10 A 372 ILE ASP SER LEU ALA LYS LEU GLN SER ALA VAL ASP ASP SEQRES 11 A 372 HIS GLY LEU PRO ALA ILE LEU LYS THR ARG ARG PHE GLY SEQRES 12 A 372 TYR ASP GLY LYS GLY GLN PHE VAL ILE ARG SER GLN GLU SEQRES 13 A 372 ASP ILE THR LYS ALA TRP ASP VAL LEU LYS ASP ALA PRO SEQRES 14 A 372 ASP GLY LEU ILE TYR GLU ALA PHE VAL ASP PHE ASP TYR SEQRES 15 A 372 GLU VAL SER GLN ILE CYS THR ALA ASP LEU LYS GLY ASN SEQRES 16 A 372 ILE ALA PHE TYR PRO LEU ALA ARG ASN THR HIS LYS GLN SEQRES 17 A 372 GLY ILE ILE VAL GLU SER GLU ALA PRO PHE GLU ASN VAL SEQRES 18 A 372 VAL LEU ALA GLU LYS ALA GLN GLN ILE ALA LYS ILE LEU SEQRES 19 A 372 VAL LYS GLU PHE ALA TYR VAL GLY THR LEU ALA ILE GLU SEQRES 20 A 372 PHE PHE VAL LYS GLY ASP GLU LEU ILE VAL ASN GLU ILE SEQRES 21 A 372 ALA PRO ARG VAL HIS ASN SER GLY HIS TRP SER ILE ASP SEQRES 22 A 372 GLY ALA VAL THR SER GLN PHE GLU ASN HIS VAL ARG ALA SEQRES 23 A 372 ILE ALA GLY LEU ILE LEU GLY ASP THR THR SER ARG LYS SEQRES 24 A 372 THR VAL MSE LEU ASN CYS ILE GLY GLY MSE PRO ALA THR SEQRES 25 A 372 LYS ASP LEU ALA ALA LEU ASP ARG VAL LYS ILE HIS SER SEQRES 26 A 372 TYR ASN LYS GLU PRO ARG LYS GLY ARG LYS VAL GLY HIS SEQRES 27 A 372 LEU ASN LEU ASN LEU ASN ASP GLU THR ASP GLU TYR GLN SEQRES 28 A 372 LEU LEU GLN VAL LYS LYS LEU ILE ALA LEU SER GLU GLU SEQRES 29 A 372 ILE ALA GLY ASN LEU TYR PHE GLN MODRES 4M9U MSE A 1 MET SELENOMETHIONINE MODRES 4M9U MSE A 14 MET SELENOMETHIONINE MODRES 4M9U MSE A 105 MET SELENOMETHIONINE MODRES 4M9U MSE A 302 MET SELENOMETHIONINE MODRES 4M9U MSE A 309 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 105 8 HET MSE A 302 8 HET MSE A 309 8 HET NA A 401 1 HET NA A 402 1 HET CL A 403 1 HET ACT A 404 4 HET ACT A 405 4 HET ACT A 406 4 HET ACT A 407 4 HET ACT A 408 4 HET ACT A 409 4 HET ACT A 410 4 HET ACT A 411 4 HET ACT A 412 4 HET ACT A 413 4 HET FMT A 414 3 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM FMT FORMIC ACID FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 5 ACT 10(C2 H3 O2 1-) FORMUL 15 FMT C H2 O2 FORMUL 16 HOH *308(H2 O) HELIX 1 1 GLY A 9 THR A 20 1 12 HELIX 2 2 PRO A 21 GLY A 23 5 3 HELIX 3 3 ALA A 36 VAL A 40 5 5 HELIX 4 4 LYS A 50 LYS A 59 1 10 HELIX 5 5 SER A 72 HIS A 81 1 10 HELIX 6 6 SER A 88 GLN A 96 1 9 HELIX 7 7 ASP A 97 HIS A 108 1 12 HELIX 8 8 SER A 120 GLY A 132 1 13 HELIX 9 9 GLU A 156 LYS A 166 1 11 HELIX 10 10 ASN A 220 ALA A 239 1 20 HELIX 11 11 HIS A 265 HIS A 269 5 5 HELIX 12 12 TRP A 270 ALA A 275 1 6 HELIX 13 13 SER A 278 ALA A 288 1 11 HELIX 14 14 ALA A 311 ALA A 317 1 7 HELIX 15 15 ASP A 345 GLU A 363 1 19 SHEET 1 A 4 THR A 42 THR A 44 0 SHEET 2 A 4 GLU A 25 LEU A 29 1 N CYS A 28 O THR A 42 SHEET 3 A 4 LYS A 2 ILE A 6 1 N ILE A 3 O GLU A 25 SHEET 4 A 4 VAL A 63 PHE A 66 1 O VAL A 63 N GLY A 4 SHEET 1 B 4 PHE A 115 ILE A 118 0 SHEET 2 B 4 LEU A 172 ALA A 176 -1 O TYR A 174 N VAL A 116 SHEET 3 B 4 ALA A 135 THR A 139 -1 N LYS A 138 O ILE A 173 SHEET 4 B 4 GLN A 149 ILE A 152 -1 O PHE A 150 N LEU A 137 SHEET 1 C 4 ILE A 196 PHE A 198 0 SHEET 2 C 4 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 C 4 GLY A 242 LYS A 251 -1 O PHE A 248 N VAL A 184 SHEET 4 C 4 GLU A 254 ALA A 261 -1 O ILE A 256 N PHE A 249 SHEET 1 D 7 ILE A 196 PHE A 198 0 SHEET 2 D 7 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 D 7 ALA A 202 LYS A 207 -1 O ALA A 202 N SER A 185 SHEET 4 D 7 ILE A 210 ALA A 216 -1 O GLU A 215 N ARG A 203 SHEET 5 D 7 THR A 300 ILE A 306 -1 O MSE A 302 N SER A 214 SHEET 6 D 7 LYS A 335 ASN A 342 -1 O LEU A 339 N LEU A 303 SHEET 7 D 7 LYS A 322 SER A 325 -1 N LYS A 322 O ASN A 340 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 13 N MSE A 14 1555 1555 1.32 LINK C MSE A 14 N LEU A 15 1555 1555 1.33 LINK C PHE A 104 N MSE A 105 1555 1555 1.34 LINK C MSE A 105 N GLN A 106 1555 1555 1.33 LINK C VAL A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N LEU A 303 1555 1555 1.33 LINK C GLY A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N PRO A 310 1555 1555 1.35 LINK O GLU A 37 NA NA A 401 1555 1555 2.31 LINK O VAL A 40 NA NA A 401 1555 1555 2.31 LINK O SER A 95 NA NA A 402 1555 1555 2.39 LINK OE2 GLU A 101 NA NA A 402 1555 1555 2.34 LINK O ILE A 260 NA NA A 402 1555 1555 2.34 LINK NA NA A 401 O HOH A 501 1555 1555 2.38 LINK NA NA A 401 O HOH A 550 1555 1555 3.16 LINK NA NA A 401 O HOH A 729 1555 1555 2.28 LINK NA NA A 402 O HOH A 604 1555 1555 2.46 LINK NA NA A 402 O HOH A 683 1555 1555 2.36 CISPEP 1 TYR A 86 PRO A 87 0 -2.04 CISPEP 2 LEU A 133 PRO A 134 0 1.29 CISPEP 3 ALA A 216 PRO A 217 0 -6.27 SITE 1 AC1 5 GLU A 37 VAL A 40 HOH A 501 HOH A 550 SITE 2 AC1 5 HOH A 729 SITE 1 AC2 5 SER A 95 GLU A 101 ILE A 260 HOH A 604 SITE 2 AC2 5 HOH A 683 SITE 1 AC3 1 CYS A 35 SITE 1 AC4 6 ALA A 18 SER A 278 HOH A 503 HOH A 525 SITE 2 AC4 6 HOH A 580 HOH A 609 SITE 1 AC5 4 PHE A 150 VAL A 151 LYS A 357 HOH A 658 SITE 1 AC6 8 LYS A 2 LYS A 232 ILE A 233 LYS A 236 SITE 2 AC6 8 HOH A 561 HOH A 700 HOH A 755 HOH A 803 SITE 1 AC7 6 GLY A 30 LYS A 31 ASN A 32 VAL A 43 SITE 2 AC7 6 ASP A 45 HOH A 545 SITE 1 AC8 4 ILE A 110 ALA A 111 LEU A 255 HOH A 723 SITE 1 AC9 2 HOH A 553 HOH A 784 SITE 1 BC1 6 LYS A 2 HIS A 27 GLN A 60 HOH A 708 SITE 2 BC1 6 HOH A 737 HOH A 758 SITE 1 BC2 6 LYS A 328 HOH A 567 HOH A 626 HOH A 654 SITE 2 BC2 6 HOH A 655 HOH A 718 SITE 1 BC3 4 THR A 296 SER A 297 ARG A 298 HOH A 689 SITE 1 BC4 6 ASN A 80 SER A 88 ALA A 89 HOH A 519 SITE 2 BC4 6 HOH A 538 HOH A 774 SITE 1 BC5 1 ARG A 334 CRYST1 85.313 85.313 107.673 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009287 0.00000 HETATM 1 N MSE A 1 28.486 6.038 1.946 1.00 21.92 N ANISOU 1 N MSE A 1 2555 2814 2962 144 56 -429 N HETATM 2 CA MSE A 1 28.253 6.042 3.388 1.00 18.51 C ANISOU 2 CA MSE A 1 2152 2326 2554 160 26 -366 C HETATM 3 C MSE A 1 26.906 6.653 3.737 1.00 16.69 C ANISOU 3 C MSE A 1 1963 2073 2304 112 37 -282 C HETATM 4 O MSE A 1 26.503 7.662 3.158 1.00 17.91 O ANISOU 4 O MSE A 1 2114 2269 2424 68 73 -263 O HETATM 5 CB MSE A 1 29.347 6.815 4.110 1.00 20.03 C ANISOU 5 CB MSE A 1 2307 2560 2741 172 36 -374 C HETATM 6 CG MSE A 1 29.261 6.728 5.617 1.00 17.26 C ANISOU 6 CG MSE A 1 1986 2159 2412 193 0 -319 C HETATM 7 SE MSE A 1 30.658 7.789 6.467 0.68 31.68 SE ANISOU 7 SE MSE A 1 3763 4044 4229 205 11 -334 SE HETATM 8 CE MSE A 1 31.197 6.515 7.832 1.00 39.69 C ANISOU 8 CE MSE A 1 4800 4983 5297 280 -71 -335 C