HEADER LYASE 15-AUG-13 4MA5 TITLE THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE TITLE 2 ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. TULARENSIS SCHU S4 IN TITLE 3 COMPLEX WITH AN ATP ANALOG, AMP-PNP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE, ATPASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 177416; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT_0897, PURK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG28 KEYWDS STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS KEYWDS 3 DISEASES, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 06-DEC-23 4MA5 1 REMARK REVDAT 4 20-SEP-23 4MA5 1 REMARK LINK REVDAT 3 21-DEC-16 4MA5 1 REMARK SEQADV SEQRES REVDAT 2 25-SEP-13 4MA5 1 AUTHOR REVDAT 1 28-AUG-13 4MA5 0 JRNL AUTH K.TAN,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINOIMIDAZOLE JRNL TITL 2 CARBOXYLASE ATPASE SUBUNIT OF FRANCISELLA TULARENSIS SUBSP. JRNL TITL 3 TULARENSIS SCHU S4 IN COMPLEX WITH AN ATP ANALOG, AMP-PNP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 34667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8643 - 4.1380 0.89 2747 135 0.1692 0.1983 REMARK 3 2 4.1380 - 3.2863 0.93 2721 137 0.1605 0.1924 REMARK 3 3 3.2863 - 2.8715 0.95 2723 164 0.1780 0.2188 REMARK 3 4 2.8715 - 2.6092 0.96 2741 142 0.1835 0.2584 REMARK 3 5 2.6092 - 2.4223 0.96 2743 151 0.1825 0.2315 REMARK 3 6 2.4223 - 2.2795 0.96 2744 148 0.1749 0.2289 REMARK 3 7 2.2795 - 2.1654 0.97 2744 149 0.1620 0.2155 REMARK 3 8 2.1654 - 2.0712 0.97 2753 132 0.1670 0.2065 REMARK 3 9 2.0712 - 1.9915 0.98 2755 156 0.1722 0.2184 REMARK 3 10 1.9915 - 1.9228 0.98 2745 146 0.1789 0.2538 REMARK 3 11 1.9228 - 1.8627 0.98 2752 139 0.1999 0.2464 REMARK 3 12 1.8627 - 1.8095 0.98 2769 131 0.2233 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2883 REMARK 3 ANGLE : 1.180 3911 REMARK 3 CHIRALITY : 0.081 458 REMARK 3 PLANARITY : 0.004 497 REMARK 3 DIHEDRAL : 14.901 1040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2904 20.3466 36.0988 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2473 REMARK 3 T33: 0.2183 T12: -0.0138 REMARK 3 T13: -0.0218 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.4940 L22: 1.0355 REMARK 3 L33: 2.1413 L12: 0.0494 REMARK 3 L13: -0.4433 L23: -0.1629 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.1448 S13: -0.0248 REMARK 3 S21: -0.1434 S22: -0.0370 S23: 0.1077 REMARK 3 S31: 0.0760 S32: -0.3076 S33: 0.0480 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4011 20.7759 18.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.2464 REMARK 3 T33: 0.2561 T12: -0.0214 REMARK 3 T13: 0.0528 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2060 L22: 1.3748 REMARK 3 L33: 2.8453 L12: -0.0709 REMARK 3 L13: 0.2226 L23: 1.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.1181 S13: -0.1092 REMARK 3 S21: -0.1190 S22: 0.0788 S23: -0.1484 REMARK 3 S31: 0.1384 S32: 0.2948 S33: -0.0943 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2767 24.5933 39.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.2121 REMARK 3 T33: 0.2374 T12: -0.0297 REMARK 3 T13: 0.0244 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0639 L22: 1.3160 REMARK 3 L33: 1.8771 L12: -0.5138 REMARK 3 L13: 0.2283 L23: -0.1764 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0627 S13: 0.0351 REMARK 3 S21: -0.0906 S22: 0.0230 S23: -0.1593 REMARK 3 S31: -0.0532 S32: 0.2631 S33: -0.0173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34710 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.809 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4M9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2SO4, 0.1M NAACT, 25% (W/V) REMARK 280 PEG 4000, 15MM AMP-PNP, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.26950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.47150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.90425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.47150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.63475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.90425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.47150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.63475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.26950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED THAT THE CHAIN A REMARK 300 AND ITS SYMMETRY RELATED MOLECULE BY THE OPERATOR Y,X,-Z FORM A REMARK 300 DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 106.53900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 252 REMARK 465 ASP A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 147 CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 160 CD CE NZ REMARK 470 GLN A 208 CD OE1 NE2 REMARK 470 VAL A 221 CG1 CG2 REMARK 470 LYS A 236 CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 LYS A 313 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 220 99.30 -160.64 REMARK 500 ASN A 258 -66.45 -91.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 O REMARK 620 2 VAL A 40 O 99.3 REMARK 620 3 HOH A 605 O 105.2 98.6 REMARK 620 4 HOH A 630 O 101.3 79.3 153.4 REMARK 620 5 HOH A 662 O 100.4 156.5 88.4 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 95 O REMARK 620 2 GLU A 101 OE2 92.9 REMARK 620 3 ILE A 260 O 122.1 88.9 REMARK 620 4 HOH A 607 O 89.1 88.2 148.7 REMARK 620 5 HOH A 666 O 85.5 175.2 95.8 87.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M9U RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 4MA0 RELATED DB: PDB REMARK 900 IN COMPLEX WITH HYDROLYSED ATP REMARK 900 RELATED ID: CSGID-IDP04645 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4MAM RELATED DB: PDB DBREF 4MA5 A 1 365 UNP Q5NGE8 Q5NGE8_FRATT 1 365 SEQRES 1 A 365 MSE LYS ILE GLY ILE ILE GLY ALA GLY GLN LEU ALA ARG SEQRES 2 A 365 MSE LEU SER LEU ALA GLY THR PRO LEU GLY LEU GLU PHE SEQRES 3 A 365 HIS CYS LEU GLY LYS ASN GLY ASP CYS ALA GLU GLU VAL SEQRES 4 A 365 VAL LYS THR VAL THR ASP ILE GLU LEU THR LYS VAL ASN SEQRES 5 A 365 ASP VAL VAL ALA TRP ALA LYS GLN PHE ASP VAL ILE THR SEQRES 6 A 365 PHE GLU ASN GLU ASN ILE SER HIS GLU LEU ILE LYS ALA SEQRES 7 A 365 ILE ASN HIS GLU VAL SER VAL TYR PRO SER ALA LYS ALA SEQRES 8 A 365 ILE ALA ILE SER GLN ASP ARG LEU LEU GLU LYS SER PHE SEQRES 9 A 365 MSE GLN ASP HIS GLY ILE ALA THR ALA LYS PHE VAL ASN SEQRES 10 A 365 ILE ASP SER LEU ALA LYS LEU GLN SER ALA VAL ASP ASP SEQRES 11 A 365 HIS GLY LEU PRO ALA ILE LEU LYS THR ARG ARG PHE GLY SEQRES 12 A 365 TYR ASP GLY LYS GLY GLN PHE VAL ILE ARG SER GLN GLU SEQRES 13 A 365 ASP ILE THR LYS ALA TRP ASP VAL LEU LYS ASP ALA PRO SEQRES 14 A 365 ASP GLY LEU ILE TYR GLU ALA PHE VAL ASP PHE ASP TYR SEQRES 15 A 365 GLU VAL SER GLN ILE CYS THR ALA ASP LEU LYS GLY ASN SEQRES 16 A 365 ILE ALA PHE TYR PRO LEU ALA ARG ASN THR HIS LYS GLN SEQRES 17 A 365 GLY ILE ILE VAL GLU SER GLU ALA PRO PHE GLU ASN VAL SEQRES 18 A 365 VAL LEU ALA GLU LYS ALA GLN GLN ILE ALA LYS ILE LEU SEQRES 19 A 365 VAL LYS GLU PHE ALA TYR VAL GLY THR LEU ALA ILE GLU SEQRES 20 A 365 PHE PHE VAL LYS GLY ASP GLU LEU ILE VAL ASN GLU ILE SEQRES 21 A 365 ALA PRO ARG VAL HIS ASN SER GLY HIS TRP SER ILE ASP SEQRES 22 A 365 GLY ALA VAL THR SER GLN PHE GLU ASN HIS VAL ARG ALA SEQRES 23 A 365 ILE ALA GLY LEU ILE LEU GLY ASP THR THR SER ARG LYS SEQRES 24 A 365 THR VAL MSE LEU ASN CYS ILE GLY GLY MSE PRO ALA THR SEQRES 25 A 365 LYS ASP LEU ALA ALA LEU ASP ARG VAL LYS ILE HIS SER SEQRES 26 A 365 TYR ASN LYS GLU PRO ARG LYS GLY ARG LYS VAL GLY HIS SEQRES 27 A 365 LEU ASN LEU ASN LEU ASN ASP GLU THR ASP GLU TYR GLN SEQRES 28 A 365 LEU LEU GLN VAL LYS LYS LEU ILE ALA LEU SER GLU GLU SEQRES 29 A 365 ILE MODRES 4MA5 MSE A 1 MET SELENOMETHIONINE MODRES 4MA5 MSE A 14 MET SELENOMETHIONINE MODRES 4MA5 MSE A 105 MET SELENOMETHIONINE MODRES 4MA5 MSE A 302 MET SELENOMETHIONINE MODRES 4MA5 MSE A 309 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 105 8 HET MSE A 302 8 HET MSE A 309 8 HET ANP A 401 31 HET FMT A 402 3 HET NA A 403 1 HET NA A 404 1 HET GOL A 405 6 HETNAM MSE SELENOMETHIONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 FMT C H2 O2 FORMUL 4 NA 2(NA 1+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *238(H2 O) HELIX 1 1 GLY A 9 THR A 20 1 12 HELIX 2 2 PRO A 21 GLY A 23 5 3 HELIX 3 3 ALA A 36 VAL A 40 5 5 HELIX 4 4 LYS A 50 LYS A 59 1 10 HELIX 5 5 SER A 72 HIS A 81 1 10 HELIX 6 6 SER A 88 GLN A 96 1 9 HELIX 7 7 ASP A 97 HIS A 108 1 12 HELIX 8 8 SER A 120 GLY A 132 1 13 HELIX 9 9 GLN A 155 LYS A 166 1 12 HELIX 10 10 ASN A 220 ALA A 239 1 20 HELIX 11 11 HIS A 265 HIS A 269 5 5 HELIX 12 12 TRP A 270 ALA A 275 1 6 HELIX 13 13 SER A 278 ALA A 288 1 11 HELIX 14 14 ALA A 311 ALA A 317 1 7 HELIX 15 15 ASP A 345 GLU A 363 1 19 SHEET 1 A 4 THR A 42 THR A 44 0 SHEET 2 A 4 GLU A 25 LEU A 29 1 N CYS A 28 O THR A 42 SHEET 3 A 4 LYS A 2 ILE A 6 1 N ILE A 3 O GLU A 25 SHEET 4 A 4 VAL A 63 PHE A 66 1 O VAL A 63 N GLY A 4 SHEET 1 B 4 PHE A 115 ILE A 118 0 SHEET 2 B 4 LEU A 172 ALA A 176 -1 O TYR A 174 N VAL A 116 SHEET 3 B 4 ALA A 135 THR A 139 -1 N LYS A 138 O ILE A 173 SHEET 4 B 4 GLN A 149 ILE A 152 -1 O PHE A 150 N LEU A 137 SHEET 1 C 4 ILE A 196 PHE A 198 0 SHEET 2 C 4 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 C 4 GLY A 242 VAL A 250 -1 O PHE A 248 N VAL A 184 SHEET 4 C 4 ILE A 256 ALA A 261 -1 O ILE A 256 N PHE A 249 SHEET 1 D 7 ILE A 196 PHE A 198 0 SHEET 2 D 7 TYR A 182 ALA A 190 -1 N THR A 189 O ALA A 197 SHEET 3 D 7 ALA A 202 LYS A 207 -1 O ALA A 202 N SER A 185 SHEET 4 D 7 ILE A 210 ALA A 216 -1 O ILE A 210 N LYS A 207 SHEET 5 D 7 THR A 300 ILE A 306 -1 O THR A 300 N ALA A 216 SHEET 6 D 7 LYS A 335 ASN A 342 -1 O LEU A 339 N LEU A 303 SHEET 7 D 7 LYS A 322 SER A 325 -1 N LYS A 322 O ASN A 340 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N LEU A 15 1555 1555 1.33 LINK C PHE A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLN A 106 1555 1555 1.33 LINK C VAL A 301 N MSE A 302 1555 1555 1.34 LINK C MSE A 302 N LEU A 303 1555 1555 1.33 LINK C GLY A 308 N MSE A 309 1555 1555 1.33 LINK C MSE A 309 N PRO A 310 1555 1555 1.34 LINK O GLU A 37 NA NA A 403 1555 1555 2.24 LINK O VAL A 40 NA NA A 403 1555 1555 2.30 LINK O SER A 95 NA NA A 404 1555 1555 2.61 LINK OE2 GLU A 101 NA NA A 404 1555 1555 2.31 LINK O ILE A 260 NA NA A 404 1555 1555 2.43 LINK NA NA A 403 O HOH A 605 1555 1555 2.26 LINK NA NA A 403 O HOH A 630 1555 1555 2.37 LINK NA NA A 403 O HOH A 662 1555 1555 2.42 LINK NA NA A 404 O HOH A 607 1555 1555 2.56 LINK NA NA A 404 O HOH A 666 1555 1555 2.39 CISPEP 1 TYR A 86 PRO A 87 0 -0.61 CISPEP 2 LEU A 133 PRO A 134 0 -1.34 CISPEP 3 ALA A 216 PRO A 217 0 -3.74 SITE 1 AC1 2 LEU A 121 GLN A 125 SITE 1 AC2 5 GLU A 37 VAL A 40 HOH A 605 HOH A 630 SITE 2 AC2 5 HOH A 662 SITE 1 AC3 6 SER A 95 GLU A 101 GLU A 259 ILE A 260 SITE 2 AC3 6 HOH A 607 HOH A 666 SITE 1 AC4 7 ILE A 272 ALA A 275 VAL A 276 THR A 277 SITE 2 AC4 7 SER A 278 GLU A 281 HOH A 546 CRYST1 84.943 84.943 106.539 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009386 0.00000 HETATM 1 N MSE A 1 5.069 27.471 50.825 1.00 37.10 N ANISOU 1 N MSE A 1 4292 4983 4822 303 180 -90 N HETATM 2 CA MSE A 1 5.147 27.274 49.384 1.00 34.08 C ANISOU 2 CA MSE A 1 3850 4646 4452 302 120 -82 C HETATM 3 C MSE A 1 5.778 25.942 49.031 1.00 26.89 C ANISOU 3 C MSE A 1 2919 3736 3562 186 87 -94 C HETATM 4 O MSE A 1 6.775 25.539 49.633 1.00 29.82 O ANISOU 4 O MSE A 1 3366 4031 3934 124 88 -94 O HETATM 5 CB MSE A 1 5.944 28.392 48.725 1.00 37.17 C ANISOU 5 CB MSE A 1 4335 4963 4826 359 88 -58 C HETATM 6 CG MSE A 1 6.024 28.273 47.213 1.00 39.10 C ANISOU 6 CG MSE A 1 4530 5251 5074 367 30 -47 C HETATM 7 SE MSE A 1 6.937 29.795 46.419 0.53 38.92 SE ANISOU 7 SE MSE A 1 4639 5129 5020 441 7 -13 SE HETATM 8 CE MSE A 1 5.719 30.230 44.966 1.00 54.05 C ANISOU 8 CE MSE A 1 6459 7159 6918 561 -27 9 C