HEADER OXIDOREDUCTASE 15-AUG-13 4MAB TITLE RESOLVING CYS TO ALA VARIANT OF SALMONELLA ALKYL HYDROPEROXIDE TITLE 2 REDUCTASE C IN ITS SUBSTRATE-READY CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT C; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: AHPC, ALKYL HYDROPEROXIDE REDUCTASE PROTEIN C22, COMPND 5 PEROXIREDOXIN, THIOREDOXIN PEROXIDASE; COMPND 6 EC: 1.11.1.15; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: AHPC, AHPC STM0608, STM0608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIOREDOXIN FOLD, PRX1, PRX, RESOLVING CYS MUTANT, PEROXIDASE, KEYWDS 2 PEROXIREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PERKINS,K.J.NELSON,J.R.WILLIAMS,L.B.POOLE,P.A.KARPLUS REVDAT 5 20-SEP-23 4MAB 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 4MAB 1 REMARK REVDAT 3 12-FEB-14 4MAB 1 JRNL REVDAT 2 27-NOV-13 4MAB 1 JRNL REVDAT 1 20-NOV-13 4MAB 0 JRNL AUTH A.PERKINS,K.J.NELSON,J.R.WILLIAMS,D.PARSONAGE,L.B.POOLE, JRNL AUTH 2 P.A.KARPLUS JRNL TITL THE SENSITIVE BALANCE BETWEEN THE FULLY FOLDED AND LOCALLY JRNL TITL 2 UNFOLDED CONFORMATIONS OF A MODEL PEROXIREDOXIN. JRNL REF BIOCHEMISTRY V. 52 8708 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24175952 JRNL DOI 10.1021/BI4011573 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 96062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1533 - 5.8887 1.00 3913 211 0.1897 0.2123 REMARK 3 2 5.8887 - 4.6803 0.99 3792 191 0.1589 0.1778 REMARK 3 3 4.6803 - 4.0905 0.99 3726 200 0.1387 0.1864 REMARK 3 4 4.0905 - 3.7173 1.00 3752 194 0.1596 0.1727 REMARK 3 5 3.7173 - 3.4513 1.00 3760 155 0.1707 0.2096 REMARK 3 6 3.4513 - 3.2481 1.00 3713 191 0.1878 0.2438 REMARK 3 7 3.2481 - 3.0857 1.00 3723 202 0.2025 0.2246 REMARK 3 8 3.0857 - 2.9515 1.00 3724 191 0.2038 0.2652 REMARK 3 9 2.9515 - 2.8379 1.00 3695 212 0.2216 0.2914 REMARK 3 10 2.8379 - 2.7401 1.00 3688 206 0.2346 0.2651 REMARK 3 11 2.7401 - 2.6545 1.00 3715 201 0.2463 0.2645 REMARK 3 12 2.6545 - 2.5786 1.00 3715 189 0.2424 0.2842 REMARK 3 13 2.5786 - 2.5108 1.00 3661 203 0.2471 0.2818 REMARK 3 14 2.5108 - 2.4496 1.00 3708 204 0.2671 0.3026 REMARK 3 15 2.4496 - 2.3939 0.99 3653 195 0.2584 0.3024 REMARK 3 16 2.3939 - 2.3430 0.99 3658 200 0.2625 0.2857 REMARK 3 17 2.3430 - 2.2961 0.99 3689 182 0.2880 0.3134 REMARK 3 18 2.2961 - 2.2528 0.94 3472 166 0.3607 0.4035 REMARK 3 19 2.2528 - 2.2126 0.94 3491 197 0.3755 0.4323 REMARK 3 20 2.2126 - 2.1751 0.96 3581 176 0.3221 0.3249 REMARK 3 21 2.1751 - 2.1400 0.89 3235 164 0.3414 0.3462 REMARK 3 22 2.1400 - 2.1071 0.82 3039 145 0.3573 0.3619 REMARK 3 23 2.1071 - 2.0761 0.83 3061 160 0.3677 0.3640 REMARK 3 24 2.0761 - 2.0469 0.83 3050 174 0.3914 0.3835 REMARK 3 25 2.0469 - 2.0192 0.76 2815 151 0.3556 0.3770 REMARK 3 26 2.0192 - 1.9930 0.43 1577 94 0.3714 0.4681 REMARK 3 27 1.9930 - 1.9681 0.08 309 16 0.4081 0.3737 REMARK 3 28 1.9681 - 1.9444 0.02 79 7 0.3838 0.7189 REMARK 3 29 1.9444 - 1.9218 0.02 81 2 0.4998 0.4938 REMARK 3 30 1.9218 - 1.9000 0.05 196 12 0.4700 0.5607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 7360 REMARK 3 ANGLE : 1.738 9980 REMARK 3 CHIRALITY : 0.084 1100 REMARK 3 PLANARITY : 0.011 1297 REMARK 3 DIHEDRAL : 14.378 2643 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 26.1771 22.9691 121.3321 REMARK 3 T TENSOR REMARK 3 T11: 0.3698 T22: 0.2698 REMARK 3 T33: 0.2523 T12: -0.0276 REMARK 3 T13: 0.0073 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 1.0385 L22: 0.4853 REMARK 3 L33: 0.4775 L12: 0.0710 REMARK 3 L13: 0.1141 L23: -0.2776 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.1386 S13: 0.0889 REMARK 3 S21: -0.0285 S22: 0.0440 S23: -0.1101 REMARK 3 S31: -0.0456 S32: 0.1159 S33: -0.0384 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATERS ARE ORDERED FROM STRONGEST REMARK 3 DENSITY TO WEAKEST DENSITY REMARK 4 REMARK 4 4MAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117418 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4MA9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M MAGNESIUM SULFATE, 0.1 M MES, 20 REMARK 280 UM HYDROGEN PEROXIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.61500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.21000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.61500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.10500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.61500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.21000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.10500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 63.61500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.21000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -212.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 272.42000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 LYS A 168 REMARK 465 TRP A 169 REMARK 465 LYS A 170 REMARK 465 GLU A 171 REMARK 465 GLY A 172 REMARK 465 GLU A 173 REMARK 465 ALA A 174 REMARK 465 THR A 175 REMARK 465 LEU A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 SER A 179 REMARK 465 LEU A 180 REMARK 465 ASP A 181 REMARK 465 LEU A 182 REMARK 465 VAL A 183 REMARK 465 GLY A 184 REMARK 465 LYS A 185 REMARK 465 ILE A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 150 O HOH A 1174 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 98 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG C 105 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -145.59 -124.47 REMARK 500 PHE A 44 -63.29 -120.41 REMARK 500 VAL A 164 -96.04 -116.40 REMARK 500 PRO B 166 -177.02 -67.98 REMARK 500 THR C 43 -151.40 -115.04 REMARK 500 THR D 43 -159.22 -113.04 REMARK 500 THR E 43 -146.62 -113.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 72 O REMARK 620 2 HOH A1181 O 100.3 REMARK 620 3 HOH A1182 O 76.8 79.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 72 O REMARK 620 2 HOH B1006 O 96.3 REMARK 620 3 HOH B1039 O 70.4 145.2 REMARK 620 4 THR C 72 O 164.0 97.6 101.7 REMARK 620 5 HOH C1017 O 94.8 64.5 84.1 98.2 REMARK 620 6 HOH C1067 O 97.9 88.3 124.6 74.7 151.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 72 O REMARK 620 2 THR E 72 O 111.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MA9 RELATED DB: PDB REMARK 900 WILD TYPE AHPC DBREF 4MAB A 1 186 UNP P0A251 AHPC_SALTY 2 187 DBREF 4MAB B 1 186 UNP P0A251 AHPC_SALTY 2 187 DBREF 4MAB C 1 186 UNP P0A251 AHPC_SALTY 2 187 DBREF 4MAB D 1 186 UNP P0A251 AHPC_SALTY 2 187 DBREF 4MAB E 1 186 UNP P0A251 AHPC_SALTY 2 187 SEQADV 4MAB ALA A 165 UNP P0A251 CYS 166 ENGINEERED MUTATION SEQADV 4MAB ALA B 165 UNP P0A251 CYS 166 ENGINEERED MUTATION SEQADV 4MAB ALA C 165 UNP P0A251 CYS 166 ENGINEERED MUTATION SEQADV 4MAB ALA D 165 UNP P0A251 CYS 166 ENGINEERED MUTATION SEQADV 4MAB ALA E 165 UNP P0A251 CYS 166 ENGINEERED MUTATION SEQRES 1 A 186 SER LEU ILE ASN THR LYS ILE LYS PRO PHE LYS ASN GLN SEQRES 2 A 186 ALA PHE LYS ASN GLY GLU PHE ILE GLU VAL THR GLU LYS SEQRES 3 A 186 ASP THR GLU GLY ARG TRP SER VAL PHE PHE PHE TYR PRO SEQRES 4 A 186 ALA ASP PHE THR PHE VAL CYS PRO THR GLU LEU GLY ASP SEQRES 5 A 186 VAL ALA ASP HIS TYR GLU GLU LEU GLN LYS LEU GLY VAL SEQRES 6 A 186 ASP VAL TYR SER VAL SER THR ASP THR HIS PHE THR HIS SEQRES 7 A 186 LYS ALA TRP HIS SER SER SER GLU THR ILE ALA LYS ILE SEQRES 8 A 186 LYS TYR ALA MET ILE GLY ASP PRO THR GLY ALA LEU THR SEQRES 9 A 186 ARG ASN PHE ASP ASN MET ARG GLU ASP GLU GLY LEU ALA SEQRES 10 A 186 ASP ARG ALA THR PHE VAL VAL ASP PRO GLN GLY ILE ILE SEQRES 11 A 186 GLN ALA ILE GLU VAL THR ALA GLU GLY ILE GLY ARG ASP SEQRES 12 A 186 ALA SER ASP LEU LEU ARG LYS ILE LYS ALA ALA GLN TYR SEQRES 13 A 186 VAL ALA ALA HIS PRO GLY GLU VAL ALA PRO ALA LYS TRP SEQRES 14 A 186 LYS GLU GLY GLU ALA THR LEU ALA PRO SER LEU ASP LEU SEQRES 15 A 186 VAL GLY LYS ILE SEQRES 1 B 186 SER LEU ILE ASN THR LYS ILE LYS PRO PHE LYS ASN GLN SEQRES 2 B 186 ALA PHE LYS ASN GLY GLU PHE ILE GLU VAL THR GLU LYS SEQRES 3 B 186 ASP THR GLU GLY ARG TRP SER VAL PHE PHE PHE TYR PRO SEQRES 4 B 186 ALA ASP PHE THR PHE VAL CYS PRO THR GLU LEU GLY ASP SEQRES 5 B 186 VAL ALA ASP HIS TYR GLU GLU LEU GLN LYS LEU GLY VAL SEQRES 6 B 186 ASP VAL TYR SER VAL SER THR ASP THR HIS PHE THR HIS SEQRES 7 B 186 LYS ALA TRP HIS SER SER SER GLU THR ILE ALA LYS ILE SEQRES 8 B 186 LYS TYR ALA MET ILE GLY ASP PRO THR GLY ALA LEU THR SEQRES 9 B 186 ARG ASN PHE ASP ASN MET ARG GLU ASP GLU GLY LEU ALA SEQRES 10 B 186 ASP ARG ALA THR PHE VAL VAL ASP PRO GLN GLY ILE ILE SEQRES 11 B 186 GLN ALA ILE GLU VAL THR ALA GLU GLY ILE GLY ARG ASP SEQRES 12 B 186 ALA SER ASP LEU LEU ARG LYS ILE LYS ALA ALA GLN TYR SEQRES 13 B 186 VAL ALA ALA HIS PRO GLY GLU VAL ALA PRO ALA LYS TRP SEQRES 14 B 186 LYS GLU GLY GLU ALA THR LEU ALA PRO SER LEU ASP LEU SEQRES 15 B 186 VAL GLY LYS ILE SEQRES 1 C 186 SER LEU ILE ASN THR LYS ILE LYS PRO PHE LYS ASN GLN SEQRES 2 C 186 ALA PHE LYS ASN GLY GLU PHE ILE GLU VAL THR GLU LYS SEQRES 3 C 186 ASP THR GLU GLY ARG TRP SER VAL PHE PHE PHE TYR PRO SEQRES 4 C 186 ALA ASP PHE THR PHE VAL CYS PRO THR GLU LEU GLY ASP SEQRES 5 C 186 VAL ALA ASP HIS TYR GLU GLU LEU GLN LYS LEU GLY VAL SEQRES 6 C 186 ASP VAL TYR SER VAL SER THR ASP THR HIS PHE THR HIS SEQRES 7 C 186 LYS ALA TRP HIS SER SER SER GLU THR ILE ALA LYS ILE SEQRES 8 C 186 LYS TYR ALA MET ILE GLY ASP PRO THR GLY ALA LEU THR SEQRES 9 C 186 ARG ASN PHE ASP ASN MET ARG GLU ASP GLU GLY LEU ALA SEQRES 10 C 186 ASP ARG ALA THR PHE VAL VAL ASP PRO GLN GLY ILE ILE SEQRES 11 C 186 GLN ALA ILE GLU VAL THR ALA GLU GLY ILE GLY ARG ASP SEQRES 12 C 186 ALA SER ASP LEU LEU ARG LYS ILE LYS ALA ALA GLN TYR SEQRES 13 C 186 VAL ALA ALA HIS PRO GLY GLU VAL ALA PRO ALA LYS TRP SEQRES 14 C 186 LYS GLU GLY GLU ALA THR LEU ALA PRO SER LEU ASP LEU SEQRES 15 C 186 VAL GLY LYS ILE SEQRES 1 D 186 SER LEU ILE ASN THR LYS ILE LYS PRO PHE LYS ASN GLN SEQRES 2 D 186 ALA PHE LYS ASN GLY GLU PHE ILE GLU VAL THR GLU LYS SEQRES 3 D 186 ASP THR GLU GLY ARG TRP SER VAL PHE PHE PHE TYR PRO SEQRES 4 D 186 ALA ASP PHE THR PHE VAL CYS PRO THR GLU LEU GLY ASP SEQRES 5 D 186 VAL ALA ASP HIS TYR GLU GLU LEU GLN LYS LEU GLY VAL SEQRES 6 D 186 ASP VAL TYR SER VAL SER THR ASP THR HIS PHE THR HIS SEQRES 7 D 186 LYS ALA TRP HIS SER SER SER GLU THR ILE ALA LYS ILE SEQRES 8 D 186 LYS TYR ALA MET ILE GLY ASP PRO THR GLY ALA LEU THR SEQRES 9 D 186 ARG ASN PHE ASP ASN MET ARG GLU ASP GLU GLY LEU ALA SEQRES 10 D 186 ASP ARG ALA THR PHE VAL VAL ASP PRO GLN GLY ILE ILE SEQRES 11 D 186 GLN ALA ILE GLU VAL THR ALA GLU GLY ILE GLY ARG ASP SEQRES 12 D 186 ALA SER ASP LEU LEU ARG LYS ILE LYS ALA ALA GLN TYR SEQRES 13 D 186 VAL ALA ALA HIS PRO GLY GLU VAL ALA PRO ALA LYS TRP SEQRES 14 D 186 LYS GLU GLY GLU ALA THR LEU ALA PRO SER LEU ASP LEU SEQRES 15 D 186 VAL GLY LYS ILE SEQRES 1 E 186 SER LEU ILE ASN THR LYS ILE LYS PRO PHE LYS ASN GLN SEQRES 2 E 186 ALA PHE LYS ASN GLY GLU PHE ILE GLU VAL THR GLU LYS SEQRES 3 E 186 ASP THR GLU GLY ARG TRP SER VAL PHE PHE PHE TYR PRO SEQRES 4 E 186 ALA ASP PHE THR PHE VAL CYS PRO THR GLU LEU GLY ASP SEQRES 5 E 186 VAL ALA ASP HIS TYR GLU GLU LEU GLN LYS LEU GLY VAL SEQRES 6 E 186 ASP VAL TYR SER VAL SER THR ASP THR HIS PHE THR HIS SEQRES 7 E 186 LYS ALA TRP HIS SER SER SER GLU THR ILE ALA LYS ILE SEQRES 8 E 186 LYS TYR ALA MET ILE GLY ASP PRO THR GLY ALA LEU THR SEQRES 9 E 186 ARG ASN PHE ASP ASN MET ARG GLU ASP GLU GLY LEU ALA SEQRES 10 E 186 ASP ARG ALA THR PHE VAL VAL ASP PRO GLN GLY ILE ILE SEQRES 11 E 186 GLN ALA ILE GLU VAL THR ALA GLU GLY ILE GLY ARG ASP SEQRES 12 E 186 ALA SER ASP LEU LEU ARG LYS ILE LYS ALA ALA GLN TYR SEQRES 13 E 186 VAL ALA ALA HIS PRO GLY GLU VAL ALA PRO ALA LYS TRP SEQRES 14 E 186 LYS GLU GLY GLU ALA THR LEU ALA PRO SER LEU ASP LEU SEQRES 15 E 186 VAL GLY LYS ILE HET K A 201 1 HET GOL A 202 14 HET GOL A 203 14 HET K B 201 1 HET GOL C 201 14 HET K D 201 1 HET CL D 202 1 HET GOL D 203 14 HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 K 3(K 1+) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 12 CL CL 1- FORMUL 14 HOH *232(H2 O) HELIX 1 1 LYS A 26 THR A 28 5 3 HELIX 2 2 PHE A 44 HIS A 56 1 13 HELIX 3 3 HIS A 56 LEU A 63 1 8 HELIX 4 4 THR A 74 SER A 85 1 12 HELIX 5 5 THR A 87 ILE A 91 5 5 HELIX 6 6 GLY A 101 PHE A 107 1 7 HELIX 7 7 ASP A 143 HIS A 160 1 18 HELIX 8 8 LYS B 26 GLU B 29 5 4 HELIX 9 9 PRO B 47 HIS B 56 1 10 HELIX 10 10 HIS B 56 LEU B 63 1 8 HELIX 11 11 THR B 74 SER B 85 1 12 HELIX 12 12 THR B 87 ILE B 91 5 5 HELIX 13 13 GLY B 101 PHE B 107 1 7 HELIX 14 14 ASP B 143 HIS B 160 1 18 HELIX 15 15 LYS C 26 GLU C 29 5 4 HELIX 16 16 PHE C 44 HIS C 56 1 13 HELIX 17 17 HIS C 56 LEU C 63 1 8 HELIX 18 18 THR C 74 SER C 85 1 12 HELIX 19 19 THR C 87 ILE C 91 5 5 HELIX 20 20 GLY C 101 PHE C 107 1 7 HELIX 21 21 ASP C 143 HIS C 160 1 18 HELIX 22 22 GLU D 25 GLU D 29 1 5 HELIX 23 23 PHE D 44 HIS D 56 1 13 HELIX 24 24 HIS D 56 LEU D 63 1 8 HELIX 25 25 THR D 74 SER D 85 1 12 HELIX 26 26 SER D 85 LYS D 90 1 6 HELIX 27 27 GLY D 101 PHE D 107 1 7 HELIX 28 28 ASP D 143 HIS D 160 1 18 HELIX 29 29 LYS E 26 GLU E 29 5 4 HELIX 30 30 PHE E 44 HIS E 56 1 13 HELIX 31 31 HIS E 56 LEU E 63 1 8 HELIX 32 32 THR E 74 SER E 85 1 12 HELIX 33 33 THR E 87 ILE E 91 5 5 HELIX 34 34 GLY E 101 PHE E 107 1 7 HELIX 35 35 ASP E 143 HIS E 160 1 18 SHEET 1 A14 GLU A 19 THR A 24 0 SHEET 2 A14 LYS A 11 LYS A 16 -1 N ASN A 12 O VAL A 23 SHEET 3 A14 ALA A 94 GLY A 97 -1 O MET A 95 N PHE A 15 SHEET 4 A14 VAL A 65 SER A 71 1 N SER A 69 O ILE A 96 SHEET 5 A14 TRP A 32 PHE A 37 1 N TRP A 32 O ASP A 66 SHEET 6 A14 ARG A 119 VAL A 124 -1 O VAL A 124 N SER A 33 SHEET 7 A14 ILE A 130 THR A 136 -1 O GLU A 134 N THR A 121 SHEET 8 A14 ILE B 130 THR B 136 -1 O VAL B 135 N ILE A 133 SHEET 9 A14 ALA B 120 VAL B 124 -1 N VAL B 123 O GLN B 131 SHEET 10 A14 TRP B 32 PHE B 37 -1 N PHE B 37 O ALA B 120 SHEET 11 A14 VAL B 65 SER B 71 1 O ASP B 66 N TRP B 32 SHEET 12 A14 ALA B 94 GLY B 97 1 O ILE B 96 N SER B 69 SHEET 13 A14 LYS B 11 LYS B 16 -1 N PHE B 15 O MET B 95 SHEET 14 A14 GLU B 19 THR B 24 -1 O GLU B 19 N LYS B 16 SHEET 1 B14 GLU C 19 THR C 24 0 SHEET 2 B14 LYS C 11 LYS C 16 -1 N LYS C 16 O GLU C 19 SHEET 3 B14 ALA C 94 GLY C 97 -1 O MET C 95 N PHE C 15 SHEET 4 B14 VAL C 65 SER C 71 1 N SER C 69 O ILE C 96 SHEET 5 B14 TRP C 32 PHE C 37 1 N TRP C 32 O ASP C 66 SHEET 6 B14 ARG C 119 VAL C 124 -1 O VAL C 124 N SER C 33 SHEET 7 B14 ILE C 130 THR C 136 -1 O GLN C 131 N VAL C 123 SHEET 8 B14 ILE D 130 THR D 136 -1 O ILE D 133 N VAL C 135 SHEET 9 B14 ARG D 119 VAL D 124 -1 N VAL D 123 O GLN D 131 SHEET 10 B14 TRP D 32 PHE D 37 -1 N PHE D 37 O ALA D 120 SHEET 11 B14 VAL D 65 SER D 71 1 O TYR D 68 N PHE D 36 SHEET 12 B14 ALA D 94 GLY D 97 1 O ILE D 96 N SER D 69 SHEET 13 B14 LYS D 11 LYS D 16 -1 N PHE D 15 O MET D 95 SHEET 14 B14 GLU D 19 THR D 24 -1 O GLU D 19 N LYS D 16 SHEET 1 C 7 GLU E 19 THR E 24 0 SHEET 2 C 7 LYS E 11 LYS E 16 -1 N LYS E 16 O GLU E 19 SHEET 3 C 7 ALA E 94 GLY E 97 -1 O MET E 95 N PHE E 15 SHEET 4 C 7 VAL E 65 SER E 71 1 N SER E 69 O ILE E 96 SHEET 5 C 7 TRP E 32 PHE E 37 1 N TRP E 32 O ASP E 66 SHEET 6 C 7 ARG E 119 VAL E 124 -1 O VAL E 124 N SER E 33 SHEET 7 C 7 ILE E 130 THR E 136 -1 O GLU E 134 N THR E 121 LINK O THR A 72 K K A 201 1555 1555 2.92 LINK K K A 201 O HOH A1181 1555 1555 2.62 LINK K K A 201 O HOH A1182 1555 1555 2.69 LINK O THR B 72 K K B 201 1555 1555 2.87 LINK K K B 201 O HOH B1006 1555 1555 2.67 LINK K K B 201 O HOH B1039 1555 1555 3.01 LINK K K B 201 O THR C 72 1555 1555 2.70 LINK K K B 201 O HOH C1017 1555 1555 2.77 LINK K K B 201 O HOH C1067 1555 1555 3.13 LINK O THR D 72 K K D 201 1555 1555 3.24 LINK K K D 201 O THR E 72 1555 1555 3.23 SITE 1 AC1 3 THR A 72 HOH A1181 HOH A1182 SITE 1 AC2 6 THR A 43 CYS A 46 PHE A 76 ARG A 111 SITE 2 AC2 6 ARG A 119 GLU A 138 SITE 1 AC3 9 LYS A 6 THR A 28 GLU A 29 ASP A 125 SITE 2 AC3 9 PRO A 126 GLN A 127 GLY A 128 HOH A1128 SITE 3 AC3 9 HOH A1157 SITE 1 AC4 5 THR B 72 HOH B1006 HOH B1039 THR C 72 SITE 2 AC4 5 HOH C1017 SITE 1 AC5 3 ARG C 111 GLU C 138 HOH C1211 SITE 1 AC6 4 THR D 72 PRO D 99 THR E 72 PRO E 99 SITE 1 AC7 4 HOH C1102 SER D 1 LEU D 2 ILE D 3 SITE 1 AC8 3 THR D 43 ARG D 119 GLU D 138 CRYST1 127.230 172.420 136.210 90.00 90.00 90.00 C 2 2 21 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007342 0.00000