HEADER PLANT PROTEIN 16-AUG-13 4MAP TITLE CRYSTAL STRUCTURE OF ARA H 8 PURIFIED WITH HEATING COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: GOOBER,GROUND-NUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-A8 KEYWDS BET V 1 LIKE, SMALL MOLECULE CARRIER, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,B.K.HURLBURT,K.A.MAJOREK,J.K.MCBRIDE,S.J.MALEKI, AUTHOR 2 M.CHRUSZCZ REVDAT 3 20-SEP-23 4MAP 1 REMARK LINK REVDAT 2 15-JAN-14 4MAP 1 JRNL REVDAT 1 27-NOV-13 4MAP 0 JRNL AUTH B.K.HURLBURT,L.R.OFFERMANN,J.K.MCBRIDE,K.A.MAJOREK, JRNL AUTH 2 S.J.MALEKI,M.CHRUSZCZ JRNL TITL STRUCTURE AND FUNCTION OF THE PEANUT PANALLERGEN ARA H 8. JRNL REF J.BIOL.CHEM. V. 288 36890 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24253038 JRNL DOI 10.1074/JBC.M113.517797 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.14000 REMARK 3 B22 (A**2) : -2.07000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2407 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2330 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3259 ; 1.891 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5428 ; 1.179 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;37.923 ;26.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;15.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.822 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2688 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 7677 0.21 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0347 38.2263 27.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.1520 REMARK 3 T33: 0.0916 T12: 0.0134 REMARK 3 T13: 0.0383 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.5652 L22: 1.2364 REMARK 3 L33: 1.4067 L12: 0.0659 REMARK 3 L13: 0.8338 L23: -0.3670 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.1008 S13: -0.0754 REMARK 3 S21: 0.0330 S22: 0.0576 S23: -0.0254 REMARK 3 S31: 0.0574 S32: 0.1349 S33: -0.0978 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1793 45.2027 17.3124 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.1989 REMARK 3 T33: 0.1258 T12: -0.0149 REMARK 3 T13: 0.0340 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 7.4724 L22: 1.0052 REMARK 3 L33: 3.0143 L12: 0.5798 REMARK 3 L13: -3.5957 L23: -1.3834 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: -0.2085 S13: -0.0353 REMARK 3 S21: -0.0891 S22: 0.0392 S23: 0.1366 REMARK 3 S31: 0.0660 S32: 0.0924 S33: -0.1353 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6717 46.7249 21.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.2317 REMARK 3 T33: 0.1013 T12: 0.0046 REMARK 3 T13: 0.0214 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.8587 L22: 1.0925 REMARK 3 L33: 0.9729 L12: -0.4495 REMARK 3 L13: 0.6758 L23: -0.9661 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.1205 S13: 0.0696 REMARK 3 S21: 0.1478 S22: -0.1000 S23: -0.0271 REMARK 3 S31: -0.0896 S32: 0.1389 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7864 45.7189 30.0767 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.1946 REMARK 3 T33: 0.1135 T12: 0.0008 REMARK 3 T13: 0.0029 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.0980 L22: 6.7792 REMARK 3 L33: 1.8467 L12: -5.0628 REMARK 3 L13: 1.7362 L23: -1.4001 REMARK 3 S TENSOR REMARK 3 S11: -0.1679 S12: 0.1502 S13: 0.1070 REMARK 3 S21: 0.2093 S22: -0.0603 S23: -0.0429 REMARK 3 S31: -0.0833 S32: 0.1468 S33: 0.2282 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4415 56.5716 34.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1439 REMARK 3 T33: 0.0794 T12: -0.0208 REMARK 3 T13: -0.0239 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.1367 L22: 1.3874 REMARK 3 L33: 3.2490 L12: 0.8097 REMARK 3 L13: -0.5904 L23: -0.4209 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: 0.0052 S13: 0.0430 REMARK 3 S21: 0.1892 S22: -0.1252 S23: 0.0790 REMARK 3 S31: -0.3059 S32: -0.0175 S33: 0.3167 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7062 32.1321 28.5602 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.1580 REMARK 3 T33: 0.1574 T12: 0.0221 REMARK 3 T13: 0.0517 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2730 L22: 4.6223 REMARK 3 L33: 3.1821 L12: 1.0614 REMARK 3 L13: 0.8826 L23: 3.8325 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: 0.0542 S13: 0.0231 REMARK 3 S21: 0.2319 S22: 0.0229 S23: -0.0992 REMARK 3 S31: 0.1923 S32: 0.0429 S33: -0.0999 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 41 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9770 23.0058 37.7899 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1444 REMARK 3 T33: 0.0738 T12: 0.0039 REMARK 3 T13: 0.0576 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.1261 L22: 1.4831 REMARK 3 L33: 0.7907 L12: 0.2323 REMARK 3 L13: 0.2891 L23: 0.1707 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0223 S13: -0.0052 REMARK 3 S21: 0.0683 S22: 0.0403 S23: -0.0189 REMARK 3 S31: -0.0918 S32: 0.0477 S33: -0.0231 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8320 13.9149 30.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.0279 T22: 0.1583 REMARK 3 T33: 0.1429 T12: -0.0045 REMARK 3 T13: 0.0298 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.3877 L22: 1.5982 REMARK 3 L33: 4.4083 L12: -0.0260 REMARK 3 L13: -1.2758 L23: 0.3973 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.0200 S13: -0.0093 REMARK 3 S21: -0.1026 S22: 0.0261 S23: 0.1425 REMARK 3 S31: -0.1906 S32: 0.0343 S33: -0.0712 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0625 13.9119 40.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1487 REMARK 3 T33: 0.1473 T12: 0.0369 REMARK 3 T13: 0.0566 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.0811 L22: 4.3878 REMARK 3 L33: 2.7922 L12: 0.5047 REMARK 3 L13: 0.4272 L23: 3.3901 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: 0.0291 S13: -0.0517 REMARK 3 S21: 0.3266 S22: 0.0819 S23: 0.0162 REMARK 3 S31: 0.1354 S32: 0.0350 S33: -0.1173 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5198 12.9233 43.3969 REMARK 3 T TENSOR REMARK 3 T11: 0.5131 T22: 0.1628 REMARK 3 T33: 0.1971 T12: 0.2467 REMARK 3 T13: -0.2662 T23: -0.1151 REMARK 3 L TENSOR REMARK 3 L11: 0.1038 L22: 4.3001 REMARK 3 L33: 1.1068 L12: -0.5405 REMARK 3 L13: 0.0024 L23: -1.2454 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: -0.1078 S13: 0.1042 REMARK 3 S21: 1.1192 S22: 0.3179 S23: -0.5821 REMARK 3 S31: 0.0809 S32: 0.1989 S33: -0.0718 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 131 B 152 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2663 21.0239 35.9736 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.1993 REMARK 3 T33: 0.1224 T12: -0.0043 REMARK 3 T13: 0.0404 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.4991 L22: 4.3675 REMARK 3 L33: 0.1329 L12: -0.3731 REMARK 3 L13: 0.2020 L23: -0.6041 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: 0.2743 S13: -0.0566 REMARK 3 S21: 0.1780 S22: 0.0683 S23: -0.3040 REMARK 3 S31: -0.0544 S32: 0.0767 S33: 0.0192 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 153 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5280 37.3543 36.4327 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.0291 REMARK 3 T33: 0.0596 T12: 0.0521 REMARK 3 T13: 0.0366 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 17.8999 L22: 5.9573 REMARK 3 L33: 1.3940 L12: 3.0442 REMARK 3 L13: -0.0858 L23: 2.7377 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.4253 S13: 0.5015 REMARK 3 S21: -0.2559 S22: -0.1887 S23: 0.3479 REMARK 3 S31: -0.1486 S32: -0.0591 S33: 0.1236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4M9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS (8.0), 0.2 M LITHIUM REMARK 280 SULFATE, 34% (W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.55650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 70.88 29.00 REMARK 500 TYR A 78 65.95 34.11 REMARK 500 ALA B 76 -34.84 -37.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 31 O REMARK 620 2 ILE B 34 O 82.1 REMARK 620 3 ASP B 35 O 156.1 74.1 REMARK 620 4 VAL B 37 O 82.4 72.1 89.6 REMARK 620 5 HOH B 331 O 81.8 104.2 104.4 164.2 REMARK 620 6 HOH B 362 O 102.4 164.4 100.6 93.5 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO ARA H 8 REMARK 900 RELATED ID: 4M9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARA H 8 WITH MES BOUND REMARK 900 RELATED ID: 4MA6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO ARA H 8 WITH EPICATECHIN BOUND DBREF 4MAP A 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 DBREF 4MAP B 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 SEQRES 1 A 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 A 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 A 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 A 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 A 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 A 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 A 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 A 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 A 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 A 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 A 157 TYR SEQRES 1 B 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 B 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 B 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 B 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 B 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 B 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 B 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 B 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 B 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 B 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 B 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 B 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 B 157 TYR HET NA B 201 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *209(H2 O) HELIX 1 1 PRO A 15 LYS A 24 1 10 HELIX 2 2 ASP A 25 ILE A 34 1 10 HELIX 3 3 GLU A 75 ASN A 77 5 3 HELIX 4 4 PRO A 107 GLY A 109 5 3 HELIX 5 5 ASP A 128 ASN A 153 1 26 HELIX 6 6 PRO A 154 TYR A 157 5 4 HELIX 7 7 PRO B 15 ASP B 25 1 11 HELIX 8 8 ASP B 25 ILE B 34 1 10 HELIX 9 9 GLU B 75 ASN B 77 5 3 HELIX 10 10 PRO B 107 GLY B 109 5 3 HELIX 11 11 ASP B 128 ASN B 153 1 26 SHEET 1 A 7 VAL A 3 SER A 12 0 SHEET 2 A 7 SER A 111 THR A 121 -1 O TYR A 119 N PHE A 4 SHEET 3 A 7 ALA A 94 GLU A 105 -1 N VAL A 104 O ILE A 112 SHEET 4 A 7 ALA A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 A 7 GLU A 62 ASP A 74 -1 N GLU A 71 O ASN A 81 SHEET 6 A 7 ILE A 52 GLU A 59 -1 N ILE A 57 O LYS A 64 SHEET 7 A 7 VAL A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 B 7 VAL B 3 SER B 12 0 SHEET 2 B 7 SER B 111 THR B 121 -1 O TYR B 119 N PHE B 4 SHEET 3 B 7 ALA B 94 GLU B 105 -1 N GLU B 100 O THR B 116 SHEET 4 B 7 ALA B 79 GLY B 87 -1 N VAL B 84 O ILE B 97 SHEET 5 B 7 GLU B 62 ASP B 74 -1 N SER B 72 O ASN B 81 SHEET 6 B 7 ILE B 52 GLU B 59 -1 N LEU B 55 O ILE B 66 SHEET 7 B 7 VAL B 37 GLU B 44 -1 N GLU B 41 O LYS B 54 LINK O PRO B 31 NA NA B 201 1555 1555 2.44 LINK O ILE B 34 NA NA B 201 1555 1555 2.65 LINK O ASP B 35 NA NA B 201 1555 1555 2.83 LINK O VAL B 37 NA NA B 201 1555 1555 2.62 LINK NA NA B 201 O HOH B 331 1555 1555 2.58 LINK NA NA B 201 O HOH B 362 1555 1555 1.94 SITE 1 AC1 6 PRO B 31 ILE B 34 ASP B 35 VAL B 37 SITE 2 AC1 6 HOH B 331 HOH B 362 CRYST1 40.922 87.113 42.863 90.00 96.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024437 0.000000 0.002887 0.00000 SCALE2 0.000000 0.011479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023492 0.00000