HEADER IMMUNE SYSTEM 18-AUG-13 4MAY TITLE CRYSTAL STRUCTURE OF AN IMMUNE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II HLA-DQ-ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MHC CLASS II ANTIGEN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 31-230; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HY.1B11 TCR ALPHA CHAIN; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: UL15 PEPTIDE-HY.1B11 TCR BETA CHAIN, CHIMERIC CONSTRUCT; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DQ1 ALPHA CHAIN, HLA-DQA1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEC3.2.8.1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEE13.1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, HLA-DQ1 BETA CHAIN, SOURCE 16 HLA-DQB1; SOURCE 17 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: LEC3.2.8.1; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PEE13.1; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: UNIDENTIFIED HERPESVIRUS, HOMO SAPIENS; SOURCE 32 ORGANISM_TAXID: 39059, 9606; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 35 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 36 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS IMMUNE COMPLEX, AUTOIMMUNITY, MULTIPLE SCLEROSIS, ANTIGEN KEYWDS 2 PRESENTATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SETHI,K.W.WUCHERPFENNIG REVDAT 3 15-NOV-17 4MAY 1 REMARK REVDAT 2 06-NOV-13 4MAY 1 JRNL REVDAT 1 23-OCT-13 4MAY 0 JRNL AUTH D.K.SETHI,S.GORDO,D.A.SCHUBERT,K.W.WUCHERPFENNIG JRNL TITL CROSSREACTIVITY OF A HUMAN AUTOIMMUNE TCR IS DOMINATED BY A JRNL TITL 2 SINGLE TCR LOOP. JRNL REF NAT COMMUN V. 4 2623 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24136005 JRNL DOI 10.1038/NCOMMS3623 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2656 - 6.1577 0.96 2757 147 0.1936 0.2313 REMARK 3 2 6.1577 - 4.8905 0.99 2713 136 0.1750 0.1790 REMARK 3 3 4.8905 - 4.2732 1.00 2677 158 0.1422 0.1639 REMARK 3 4 4.2732 - 3.8828 1.00 2689 146 0.1623 0.2031 REMARK 3 5 3.8828 - 3.6047 1.00 2673 147 0.1829 0.2152 REMARK 3 6 3.6047 - 3.3923 1.00 2668 140 0.1970 0.2345 REMARK 3 7 3.3923 - 3.2225 1.00 2660 147 0.1985 0.2622 REMARK 3 8 3.2225 - 3.0823 1.00 2681 122 0.2131 0.2234 REMARK 3 9 3.0823 - 2.9637 1.00 2677 130 0.2082 0.2889 REMARK 3 10 2.9637 - 2.8615 1.00 2632 148 0.2157 0.2354 REMARK 3 11 2.8615 - 2.7720 1.00 2636 149 0.2194 0.3111 REMARK 3 12 2.7720 - 2.6928 1.00 2627 138 0.2133 0.2603 REMARK 3 13 2.6928 - 2.6219 1.00 2643 151 0.2133 0.2807 REMARK 3 14 2.6219 - 2.5580 1.00 2629 139 0.2191 0.2676 REMARK 3 15 2.5580 - 2.4998 1.00 2588 151 0.2299 0.2840 REMARK 3 16 2.4998 - 2.4466 1.00 2671 127 0.2338 0.2644 REMARK 3 17 2.4466 - 2.3977 1.00 2605 146 0.2370 0.2961 REMARK 3 18 2.3977 - 2.3525 1.00 2618 136 0.2487 0.3120 REMARK 3 19 2.3525 - 2.3104 1.00 2649 142 0.2432 0.3422 REMARK 3 20 2.3104 - 2.2713 1.00 2578 138 0.2550 0.3319 REMARK 3 21 2.2713 - 2.2347 1.00 2626 140 0.2555 0.2966 REMARK 3 22 2.2347 - 2.2003 0.97 2526 149 0.2546 0.2659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6588 REMARK 3 ANGLE : 1.191 8955 REMARK 3 CHIRALITY : 0.086 970 REMARK 3 PLANARITY : 0.004 1173 REMARK 3 DIHEDRAL : 14.327 2365 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -6.8254 22.8040 -30.2356 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.2286 REMARK 3 T33: 0.2282 T12: 0.0011 REMARK 3 T13: 0.0042 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2015 L22: 0.3471 REMARK 3 L33: 0.4455 L12: -0.1488 REMARK 3 L13: 0.2225 L23: -0.3266 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.0561 S13: 0.0179 REMARK 3 S21: 0.0953 S22: 0.0460 S23: 0.0145 REMARK 3 S31: -0.0801 S32: -0.1026 S33: 0.0518 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081686. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM CITRATE BUFFER, 10% PEG8000,0.12M REMARK 280 AMMONIUM SULFATE, PH 6.1, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.25700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.04400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.04400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.25700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.58800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -1 REMARK 465 GLU A 181 REMARK 465 GLU B -1 REMARK 465 GLY B 0 REMARK 465 ARG B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 105 REMARK 465 THR B 106 REMARK 465 GLU B 107 REMARK 465 ALA B 108 REMARK 465 LEU B 109 REMARK 465 ASN B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 SER B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 SER B 197 REMARK 465 LYS B 198 REMARK 465 MET C -1 REMARK 465 LYS C 0 REMARK 465 GLY C 1 REMARK 465 ILE C 193 REMARK 465 ILE C 194 REMARK 465 PRO C 195 REMARK 465 GLU C 196 REMARK 465 ASP C 197 REMARK 465 THR C 198 REMARK 465 PHE C 199 REMARK 465 PHE C 200 REMARK 465 PRO C 201 REMARK 465 SER C 202 REMARK 465 PRO C 203 REMARK 465 GLU C 204 REMARK 465 SER C 205 REMARK 465 SER C 206 REMARK 465 SER C 207 REMARK 465 MET D -24 REMARK 465 LYS D -23 REMARK 465 ARG D -22 REMARK 465 GLY D -9 REMARK 465 GLY D -8 REMARK 465 SER D -7 REMARK 465 GLY D -6 REMARK 465 GLY D -5 REMARK 465 GLY D -4 REMARK 465 GLY D -3 REMARK 465 SER D 241 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 215 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR D 5 O HOH D 312 2.15 REMARK 500 O PHE D 43 O HOH D 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 162 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 77.09 -117.55 REMARK 500 ASP A 27 44.35 39.24 REMARK 500 ASN B 33 -104.78 56.02 REMARK 500 PRO B 124 -164.64 -77.99 REMARK 500 THR B 139 -42.31 -140.95 REMARK 500 GLN C 60 -122.02 58.06 REMARK 500 GLU C 79 68.07 35.43 REMARK 500 ALA C 86 -178.68 -175.68 REMARK 500 SER C 166 -17.59 76.69 REMARK 500 PHE C 189 -136.98 -119.31 REMARK 500 ASN C 191 124.81 -178.29 REMARK 500 ASP D 54 115.81 -167.50 REMARK 500 ASN D 60 -166.83 -169.40 REMARK 500 SER D 71 -98.75 -123.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 9 VAL A 10 148.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PL6 RELATED DB: PDB REMARK 900 RELATED ID: 4GRL RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE -21 TO -10 ARE PART OF PEPTIDE FROM UL15 PROTEIN OF HERPES REMARK 999 VIRUS COVALENTLY ATTACHED TO BETA CHAIN OF TCR THROUGH A LINKER DBREF 4MAY A -1 181 UNP Q30066 Q30066_HUMAN 2 184 DBREF 4MAY B -1 198 UNP Q67AJ6 Q67AJ6_HUMAN 31 230 DBREF 4MAY C -1 207 PDB 4MAY 4MAY -1 207 DBREF 4MAY D -24 241 PDB 4MAY 4MAY -24 241 SEQRES 1 A 183 ASP ILE VAL ALA ASP HIS VAL ALA SER CYS GLY VAL ASN SEQRES 2 A 183 LEU TYR GLN PHE TYR GLY PRO SER GLY GLN TYR THR HIS SEQRES 3 A 183 GLU PHE ASP GLY ASP GLU GLN PHE TYR VAL ASP LEU GLU SEQRES 4 A 183 ARG LYS GLU THR ALA TRP ARG TRP PRO GLU PHE SER LYS SEQRES 5 A 183 PHE GLY GLY PHE ASP PRO GLN GLY ALA LEU ARG ASN MET SEQRES 6 A 183 ALA VAL ALA LYS HIS ASN LEU ASN ILE MET ILE LYS ARG SEQRES 7 A 183 TYR ASN SER THR ALA ALA THR ASN GLU VAL PRO GLU VAL SEQRES 8 A 183 THR VAL PHE SER LYS SER PRO VAL THR LEU GLY GLN PRO SEQRES 9 A 183 ASN THR LEU ILE CYS LEU VAL ASP ASN ILE PHE PRO PRO SEQRES 10 A 183 VAL VAL ASN ILE THR TRP LEU SER ASN GLY GLN SER VAL SEQRES 11 A 183 THR GLU GLY VAL SER GLU THR SER PHE LEU SER LYS SER SEQRES 12 A 183 ASP HIS SER PHE PHE LYS ILE SER TYR LEU THR PHE LEU SEQRES 13 A 183 PRO SER ALA ASP GLU ILE TYR ASP CYS LYS VAL GLU HIS SEQRES 14 A 183 TRP GLY LEU ASP GLN PRO LEU LEU LYS HIS TRP GLU PRO SEQRES 15 A 183 GLU SEQRES 1 B 200 GLU GLY ARG ASP SER PRO GLU ASP PHE VAL TYR GLN PHE SEQRES 2 B 200 LYS GLY LEU CYS TYR PHE THR ASN GLY THR GLU ARG VAL SEQRES 3 B 200 ARG GLY VAL THR ARG HIS ILE TYR ASN ARG GLU GLU TYR SEQRES 4 B 200 VAL ARG PHE ASP SER ASP VAL GLY VAL TYR ARG ALA VAL SEQRES 5 B 200 THR PRO GLN GLY ARG PRO VAL ALA GLU TYR TRP ASN SER SEQRES 6 B 200 GLN LYS GLU VAL LEU GLU GLY ALA ARG ALA SER VAL ASP SEQRES 7 B 200 ARG VAL CYS ARG HIS ASN TYR GLU VAL ALA TYR ARG GLY SEQRES 8 B 200 ILE LEU GLN ARG ARG VAL GLU PRO THR VAL THR ILE SER SEQRES 9 B 200 PRO SER ARG THR GLU ALA LEU ASN HIS HIS ASN LEU LEU SEQRES 10 B 200 ILE CYS SER VAL THR ASP PHE TYR PRO SER GLN ILE LYS SEQRES 11 B 200 VAL ARG TRP PHE ARG ASN ASP GLN GLU GLU THR ALA GLY SEQRES 12 B 200 VAL VAL SER THR PRO LEU ILE ARG ASN GLY ASP TRP THR SEQRES 13 B 200 PHE GLN ILE LEU VAL MET LEU GLU MET THR PRO GLN ARG SEQRES 14 B 200 GLY ASP VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU SEQRES 15 B 200 GLN SER PRO ILE THR VAL GLU TRP ARG ALA GLN SER GLU SEQRES 16 B 200 SER ALA GLN SER LYS SEQRES 1 C 209 MET LYS GLY GLU ASN VAL GLU GLN HIS PRO SER THR LEU SEQRES 2 C 209 SER VAL GLN GLU GLY ASP SER ALA VAL ILE LYS CYS THR SEQRES 3 C 209 TYR SER ASP SER ALA SER ASN TYR PHE PRO TRP TYR LYS SEQRES 4 C 209 GLN GLU LEU GLY LYS ARG PRO GLN LEU ILE ILE ASP ILE SEQRES 5 C 209 ARG SER ASN VAL GLY GLU LYS LYS ASP GLN ARG ILE ALA SEQRES 6 C 209 VAL THR LEU ASN LYS THR ALA LYS HIS PHE SER LEU HIS SEQRES 7 C 209 ILE THR GLU THR GLN PRO GLU ASP SER ALA VAL TYR PHE SEQRES 8 C 209 CYS ALA ALA SER SER PHE GLY ASN GLU LYS LEU THR PHE SEQRES 9 C 209 GLY THR GLY THR ARG LEU THR ILE ILE PRO ASN ILE GLN SEQRES 10 C 209 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 C 209 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 C 209 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 C 209 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 C 209 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 C 209 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 C 209 ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 17 C 209 SER SEQRES 1 D 266 MET LYS ARG GLN LEU VAL HIS PHE VAL ARG ASP PHE ALA SEQRES 2 D 266 GLN LEU GLY GLY SER GLY GLY GLY GLY GLY GLY ALA GLY SEQRES 3 D 266 VAL SER GLN THR PRO SER ASN LYS VAL THR GLU LYS GLY SEQRES 4 D 266 LYS TYR VAL GLU LEU ARG CYS ASP PRO ILE SER GLY HIS SEQRES 5 D 266 THR ALA LEU TYR TRP TYR ARG GLN SER LEU GLY GLN GLY SEQRES 6 D 266 PRO GLU PHE LEU ILE TYR PHE GLN GLY THR GLY ALA ALA SEQRES 7 D 266 ASP ASP SER GLY LEU PRO ASN ASP ARG PHE PHE ALA VAL SEQRES 8 D 266 ARG PRO GLU GLY SER VAL SER THR LEU LYS ILE GLN ARG SEQRES 9 D 266 THR GLU ARG GLY ASP SER ALA VAL TYR LEU CYS ALA THR SEQRES 10 D 266 SER ALA LEU GLY ASP THR GLN TYR PHE GLY PRO GLY THR SEQRES 11 D 266 ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL PHE PRO SEQRES 12 D 266 PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU ILE SEQRES 13 D 266 SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA THR SEQRES 14 D 266 GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP VAL SEQRES 15 D 266 ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP PRO SEQRES 16 D 266 GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER ARG SEQRES 17 D 266 TYR SER LEU SER SER ARG LEU ARG VAL SER ALA THR PHE SEQRES 18 D 266 TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL GLN SEQRES 19 D 266 PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN ASP SEQRES 20 D 266 ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU ALA SEQRES 21 D 266 TRP GLY ARG ALA ASP SER HET SO4 B 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *355(H2 O) HELIX 1 1 TRP A 45 PHE A 51 5 7 HELIX 2 2 PRO A 56 TYR A 77 1 22 HELIX 3 3 THR B 51 GLN B 53 5 3 HELIX 4 4 GLY B 54 GLN B 64 1 11 HELIX 5 5 GLN B 64 VAL B 78 1 15 HELIX 6 6 VAL B 78 ALA B 86 1 9 HELIX 7 7 ALA B 86 LEU B 91 1 6 HELIX 8 8 GLN C 81 SER C 85 5 5 HELIX 9 9 GLU D 81 SER D 85 5 5 HELIX 10 10 SER D 127 GLN D 135 1 9 HELIX 11 11 ALA D 194 ASN D 199 1 6 SHEET 1 A 8 GLU A 40 ALA A 42 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N TYR A 33 O ALA A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 4 GLN A 14 -1 N GLN A 14 O SER A 19 SHEET 5 A 8 VAL B 8 THR B 18 -1 O PHE B 11 N ASN A 11 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O ARG B 25 N TYR B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 SER A 93 0 SHEET 2 B 4 ASN A 103 ILE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O PHE A 145 N ILE A 112 SHEET 4 B 4 VAL A 132 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 SER A 93 0 SHEET 2 C 4 ASN A 103 ILE A 112 -1 O ILE A 106 N PHE A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O PHE A 145 N ILE A 112 SHEET 4 C 4 LEU A 138 SER A 139 -1 N LEU A 138 O PHE A 146 SHEET 1 D 4 GLN A 126 SER A 127 0 SHEET 2 D 4 ASN A 118 SER A 123 -1 N SER A 123 O GLN A 126 SHEET 3 D 4 TYR A 161 GLU A 166 -1 O LYS A 164 N THR A 120 SHEET 4 D 4 LEU A 174 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 THR B 98 PRO B 103 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 E 4 PHE B 155 GLU B 162 -1 O LEU B 161 N LEU B 115 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 THR B 98 PRO B 103 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 F 4 PHE B 155 GLU B 162 -1 O LEU B 161 N LEU B 115 SHEET 4 F 4 ILE B 148 ARG B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 LYS B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O HIS B 174 N ARG B 130 SHEET 4 G 4 ILE B 184 ARG B 189 -1 O ILE B 184 N VAL B 175 SHEET 1 H 5 VAL C 4 HIS C 7 0 SHEET 2 H 5 ALA C 19 TYR C 25 -1 O THR C 24 N GLU C 5 SHEET 3 H 5 HIS C 72 ILE C 77 -1 O ILE C 77 N ALA C 19 SHEET 4 H 5 ILE C 62 ASN C 67 -1 N ALA C 63 O HIS C 76 SHEET 5 H 5 GLU C 56 ASP C 59 -1 N ASP C 59 O ILE C 62 SHEET 1 I 5 THR C 10 GLN C 14 0 SHEET 2 I 5 THR C 106 ILE C 111 1 O THR C 109 N LEU C 11 SHEET 3 I 5 ALA C 86 SER C 94 -1 N ALA C 86 O LEU C 108 SHEET 4 I 5 SER C 30 GLN C 38 -1 N TYR C 36 O PHE C 89 SHEET 5 I 5 GLN C 45 ARG C 51 -1 O GLN C 45 N LYS C 37 SHEET 1 J 4 THR C 10 GLN C 14 0 SHEET 2 J 4 THR C 106 ILE C 111 1 O THR C 109 N LEU C 11 SHEET 3 J 4 ALA C 86 SER C 94 -1 N ALA C 86 O LEU C 108 SHEET 4 J 4 THR C 101 PHE C 102 -1 O THR C 101 N ALA C 92 SHEET 1 K 4 ALA C 120 GLN C 123 0 SHEET 2 K 4 SER C 133 THR C 138 -1 O LEU C 136 N TYR C 122 SHEET 3 K 4 PHE C 169 SER C 178 -1 O ALA C 176 N CYS C 135 SHEET 4 K 4 VAL C 154 ILE C 156 -1 N TYR C 155 O TRP C 177 SHEET 1 L 4 ALA C 120 GLN C 123 0 SHEET 2 L 4 SER C 133 THR C 138 -1 O LEU C 136 N TYR C 122 SHEET 3 L 4 PHE C 169 SER C 178 -1 O ALA C 176 N CYS C 135 SHEET 4 L 4 CYS C 160 MET C 164 -1 N LEU C 162 O SER C 171 SHEET 1 M 6 ASN D 8 GLU D 12 0 SHEET 2 M 6 THR D 105 LEU D 110 1 O LEU D 110 N THR D 11 SHEET 3 M 6 ALA D 86 SER D 93 -1 N ALA D 86 O LEU D 107 SHEET 4 M 6 ALA D 29 GLN D 35 -1 N TYR D 31 O ALA D 91 SHEET 5 M 6 GLU D 42 GLN D 48 -1 O PHE D 47 N LEU D 30 SHEET 6 M 6 GLY D 51 ASP D 54 -1 O GLY D 51 N GLN D 48 SHEET 1 N 4 ASN D 8 GLU D 12 0 SHEET 2 N 4 THR D 105 LEU D 110 1 O LEU D 110 N THR D 11 SHEET 3 N 4 ALA D 86 SER D 93 -1 N ALA D 86 O LEU D 107 SHEET 4 N 4 GLN D 99 PHE D 101 -1 O TYR D 100 N THR D 92 SHEET 1 O 3 VAL D 17 CYS D 21 0 SHEET 2 O 3 SER D 73 ILE D 77 -1 O LEU D 75 N LEU D 19 SHEET 3 O 3 PHE D 63 VAL D 66 -1 N PHE D 64 O LYS D 76 SHEET 1 P 4 GLU D 120 PHE D 124 0 SHEET 2 P 4 LYS D 136 PHE D 146 -1 O VAL D 140 N PHE D 124 SHEET 3 P 4 TYR D 184 SER D 193 -1 O LEU D 186 N ALA D 143 SHEET 4 P 4 VAL D 166 THR D 168 -1 N CYS D 167 O ARG D 189 SHEET 1 Q 4 GLU D 120 PHE D 124 0 SHEET 2 Q 4 LYS D 136 PHE D 146 -1 O VAL D 140 N PHE D 124 SHEET 3 Q 4 TYR D 184 SER D 193 -1 O LEU D 186 N ALA D 143 SHEET 4 Q 4 LEU D 173 LYS D 174 -1 N LEU D 173 O SER D 185 SHEET 1 R 4 LYS D 160 VAL D 162 0 SHEET 2 R 4 VAL D 151 VAL D 157 -1 N VAL D 157 O LYS D 160 SHEET 3 R 4 HIS D 203 PHE D 210 -1 O GLN D 207 N SER D 154 SHEET 4 R 4 GLN D 229 TRP D 236 -1 O GLN D 229 N PHE D 210 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.09 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 SSBOND 4 CYS C 23 CYS C 90 1555 1555 2.03 SSBOND 5 CYS C 135 CYS C 185 1555 1555 2.04 SSBOND 6 CYS C 160 CYS D 167 1555 1555 2.06 SSBOND 7 CYS D 21 CYS D 90 1555 1555 2.02 SSBOND 8 CYS D 141 CYS D 206 1555 1555 2.04 CISPEP 1 GLY A 17 PRO A 18 0 -5.44 CISPEP 2 PHE A 113 PRO A 114 0 -3.00 CISPEP 3 TYR B 123 PRO B 124 0 0.51 CISPEP 4 HIS C 7 PRO C 8 0 -4.06 CISPEP 5 ASN C 190 ASN C 191 0 -4.97 CISPEP 6 THR D 5 PRO D 6 0 -4.82 CISPEP 7 TYR D 147 PRO D 148 0 -2.26 SITE 1 AC1 7 ARG B 77 ASN C 31 ARG C 51 PHE C 95 SITE 2 AC1 7 HOH C 315 ARG D -15 ASP D 97 CRYST1 72.514 123.176 134.088 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007458 0.00000