HEADER TRANSFERASE 19-AUG-13 4MBG TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS PROTEIN FARNESYLTRANSFERASE TITLE 2 BINARY COMPLEX WITH FARNESYLDIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT RAM2; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAAX FARNESYLTRANSFERASE BETA SUBUNIT RAM1; COMPND 9 CHAIN: B; COMPND 10 EC: 2.5.1.58; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 5 GENE: AFUA_4G07800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF DUET1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 13 ORGANISM_TAXID: 330879; SOURCE 14 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 15 GENE: AFUA_4G10330; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDF DUET1 KEYWDS FARNESYLDIPHOSPHATE, FARNESYLTRANSFERASE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.MABANGLO,M.A.HAST,L.S.BEESE REVDAT 4 03-APR-24 4MBG 1 REMARK REVDAT 3 28-FEB-24 4MBG 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 4MBG 1 JRNL REVDAT 1 01-JAN-14 4MBG 0 JRNL AUTH M.F.MABANGLO,M.A.HAST,N.B.LUBOCK,H.W.HELLINGA,L.S.BEESE JRNL TITL CRYSTAL STRUCTURES OF THE FUNGAL PATHOGEN ASPERGILLUS JRNL TITL 2 FUMIGATUS PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH JRNL TITL 3 SUBSTRATES AND INHIBITORS REVEAL FEATURES FOR ANTIFUNGAL JRNL TITL 4 DRUG DESIGN. JRNL REF PROTEIN SCI. V. 23 289 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24347326 JRNL DOI 10.1002/PRO.2411 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 89162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9591 - 5.3920 1.00 2916 141 0.1440 0.1673 REMARK 3 2 5.3920 - 4.2878 1.00 2897 130 0.1160 0.1432 REMARK 3 3 4.2878 - 3.7482 1.00 2867 146 0.1204 0.1525 REMARK 3 4 3.7482 - 3.4065 1.00 2870 152 0.1254 0.1702 REMARK 3 5 3.4065 - 3.1629 1.00 2803 152 0.1290 0.1577 REMARK 3 6 3.1629 - 2.9768 1.00 2895 139 0.1274 0.1640 REMARK 3 7 2.9768 - 2.8280 1.00 2831 143 0.1245 0.1563 REMARK 3 8 2.8280 - 2.7050 1.00 2861 139 0.1177 0.1518 REMARK 3 9 2.7050 - 2.6010 1.00 2857 128 0.1129 0.1646 REMARK 3 10 2.6010 - 2.5114 1.00 2847 147 0.1123 0.1472 REMARK 3 11 2.5114 - 2.4329 1.00 2819 139 0.1070 0.1641 REMARK 3 12 2.4329 - 2.3635 1.00 2871 128 0.1102 0.1662 REMARK 3 13 2.3635 - 2.3013 1.00 2838 164 0.1063 0.1561 REMARK 3 14 2.3013 - 2.2452 1.00 2817 165 0.1062 0.1802 REMARK 3 15 2.2452 - 2.1942 1.00 2832 136 0.1090 0.1436 REMARK 3 16 2.1942 - 2.1475 1.00 2880 153 0.1001 0.1478 REMARK 3 17 2.1475 - 2.1046 1.00 2774 156 0.1005 0.1476 REMARK 3 18 2.1046 - 2.0649 1.00 2843 157 0.1048 0.1512 REMARK 3 19 2.0649 - 2.0280 1.00 2832 139 0.1028 0.1777 REMARK 3 20 2.0280 - 1.9937 1.00 2834 168 0.1096 0.1845 REMARK 3 21 1.9937 - 1.9615 1.00 2810 148 0.1422 0.1854 REMARK 3 22 1.9615 - 1.9314 1.00 2816 156 0.1318 0.1826 REMARK 3 23 1.9314 - 1.9030 1.00 2849 140 0.1218 0.1618 REMARK 3 24 1.9030 - 1.8762 1.00 2764 169 0.1136 0.1758 REMARK 3 25 1.8762 - 1.8508 1.00 2842 146 0.1152 0.1761 REMARK 3 26 1.8508 - 1.8268 1.00 2865 152 0.1320 0.1888 REMARK 3 27 1.8268 - 1.8040 1.00 2753 171 0.1497 0.2018 REMARK 3 28 1.8040 - 1.7822 1.00 2822 166 0.1707 0.2232 REMARK 3 29 1.7822 - 1.7615 0.99 2815 134 0.1917 0.1969 REMARK 3 30 1.7615 - 1.7417 0.84 2420 118 0.2199 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6631 REMARK 3 ANGLE : 1.231 9058 REMARK 3 CHIRALITY : 0.089 947 REMARK 3 PLANARITY : 0.006 1186 REMARK 3 DIHEDRAL : 13.562 2461 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUID NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89198 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF ASPERGILLUS FUMIGATUS PROTEIN REMARK 200 FARNESYLTRANSFERASE GENERATED USING PHYRE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-10 % PEG6000, 600-800 MM LICL, AND REMARK 280 100 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.39650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 274 REMARK 465 GLU A 275 REMARK 465 LYS A 276 REMARK 465 GLN A 277 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 GLY A 280 REMARK 465 GLN A 281 REMARK 465 VAL A 282 REMARK 465 VAL A 283 REMARK 465 ASP A 284 REMARK 465 VAL A 285 REMARK 465 SER A 350 REMARK 465 ALA A 351 REMARK 465 SER A 352 REMARK 465 ALA A 353 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 HIS B 10 REMARK 465 ARG B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 PHE B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 THR B 19 REMARK 465 SER B 20 REMARK 465 GLN B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 SER B 24 REMARK 465 VAL B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 465 PRO B 30 REMARK 465 LYS B 31 REMARK 465 GLY B 32 REMARK 465 ARG B 33 REMARK 465 LYS B 34 REMARK 465 PHE B 35 REMARK 465 SER B 36 REMARK 465 ALA B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 GLN B 40 REMARK 465 VAL B 41 REMARK 465 ASN B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 SER B 45 REMARK 465 PRO B 46 REMARK 465 ALA B 47 REMARK 465 VAL B 48 REMARK 465 THR B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 HIS B 52 REMARK 465 ASN B 53 REMARK 465 HIS B 54 REMARK 465 SER B 55 REMARK 465 SER B 56 REMARK 465 SER B 57 REMARK 465 SER B 58 REMARK 465 GLN B 59 REMARK 465 SER B 60 REMARK 465 GLY B 61 REMARK 465 LYS B 62 REMARK 465 MET B 63 REMARK 465 GLY B 64 REMARK 465 GLU B 65 REMARK 465 SER B 66 REMARK 465 GLN B 67 REMARK 465 ALA B 390 REMARK 465 GLY B 391 REMARK 465 PRO B 392 REMARK 465 LYS B 393 REMARK 465 LYS B 458 REMARK 465 ASP B 459 REMARK 465 ASP B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 850 O HOH B 893 2.05 REMARK 500 NE2 GLN B 380 O HOH B 1071 2.09 REMARK 500 OE1 GLU A 333 O HOH A 746 2.12 REMARK 500 O HOH B 747 O HOH B 1010 2.14 REMARK 500 OE2 GLU B 92 O HOH B 1073 2.14 REMARK 500 O HOH A 760 O HOH B 743 2.16 REMARK 500 O HOH B 881 O HOH B 924 2.16 REMARK 500 O HOH A 665 O HOH A 773 2.16 REMARK 500 O HOH A 754 O HOH B 877 2.18 REMARK 500 ND2 ASN B 472 O HOH B 977 2.19 REMARK 500 O HOH A 659 O HOH A 745 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 282 O HOH A 801 2645 2.08 REMARK 500 O HOH B 911 O HOH B 917 2645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 163 CB CYS B 163 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -38.28 169.46 REMARK 500 ALA A 241 82.84 -163.96 REMARK 500 LYS A 323 -53.41 -133.51 REMARK 500 ASP A 325 62.16 -154.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 365 OD2 REMARK 620 2 ASP B 365 OD1 56.7 REMARK 620 3 CYS B 367 SG 106.6 90.3 REMARK 620 4 HIS B 433 NE2 120.2 87.1 120.7 REMARK 620 5 HOH B1079 O 96.4 151.0 109.5 99.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L9P RELATED DB: PDB REMARK 900 RELATED ID: 4LNB RELATED DB: PDB REMARK 900 RELATED ID: 4LNG RELATED DB: PDB DBREF 4MBG A 1 353 UNP Q4WP27 Q4WP27_ASPFU 1 353 DBREF 4MBG B 1 519 UNP Q4WPS9 Q4WPS9_ASPFU 1 519 SEQADV 4MBG MET A -13 UNP Q4WP27 INITIATING METHIONINE SEQADV 4MBG GLY A -12 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG SER A -11 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG SER A -10 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -9 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -8 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -7 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -6 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -5 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG HIS A -4 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG SER A -3 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG GLN A -2 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG ASP A -1 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG PRO A 0 UNP Q4WP27 EXPRESSION TAG SEQADV 4MBG SER A 146 UNP Q4WP27 ASN 146 ENGINEERED MUTATION SEQRES 1 A 367 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 367 PRO MET GLU GLY LYS TYR SER SER ASP PRO GLU TRP ALA SEQRES 3 A 367 SER ILE LYS PRO ILE GLU LEU ASN ASP GLY SER ASP PHE SEQRES 4 A 367 GLY ALA MET PRO LEU ALA THR ILE SER TYR SER PRO GLU SEQRES 5 A 367 TYR LEU GLU ALA THR SER TYR LEU ARG ALA VAL MET ALA SEQRES 6 A 367 ALA ASN GLU MET SER GLU ARG ALA LEU ARG LEU THR GLY SEQRES 7 A 367 ASP ILE ILE SER MET ASN PRO ALA HIS TYR THR VAL TRP SEQRES 8 A 367 ILE TYR ARG ALA LYS ILE LEU PHE ALA LEU GLY LYS ASP SEQRES 9 A 367 LEU ASN GLU GLU ILE GLU TRP LEU ASN LYS VAL ALA LEU SEQRES 10 A 367 LYS HIS LEU LYS ASN TYR GLN ILE TRP HIS HIS ARG GLN SEQRES 11 A 367 VAL LEU MET SER SER ARG ALA HIS PHE PRO THR LEU PRO SEQRES 12 A 367 PRO ARG GLU GLN ASP PHE LEU MET GLU MET PHE ALA GLN SEQRES 13 A 367 ASP ALA LYS SER TYR HIS VAL TRP THR TYR ARG HIS TRP SEQRES 14 A 367 LEU VAL ARG HIS PHE LYS LEU TRP ASP HIS PRO ARG GLU SEQRES 15 A 367 ILE GLN ASP VAL GLU ALA LEU LEU LYS ALA ASP VAL ARG SEQRES 16 A 367 ASN ASN SER ALA TRP ASN HIS ARG TYR MET LEU ARG PHE SEQRES 17 A 367 GLY PRO ARG ASP GLU ASN GLU PHE ASP ALA GLY LEU HIS SEQRES 18 A 367 ASN THR THR GLY PRO SER SER GLU LYS GLY ARG LEU PRO SEQRES 19 A 367 VAL VAL ASP GLU ASP LEU VAL ASP SER GLU LEU GLN TYR SEQRES 20 A 367 SER GLN SER ARG ILE LEU GLU ALA PRO GLU ASN ARG SER SEQRES 21 A 367 PRO TRP SER TYR ALA ARG GLY VAL LEU GLN ALA ALA GLY SEQRES 22 A 367 ARG PRO LEU SER GLU TRP LYS ASP PHE ALA ARG SER PHE SEQRES 23 A 367 VAL VAL GLU LYS GLN GLU ASN GLY GLN VAL VAL ASP VAL SEQRES 24 A 367 ALA VAL LYS SER SER HIS ALA ILE GLU TRP LEU ALA ASP SEQRES 25 A 367 VAL TYR ALA GLU GLU ASP GLY SER GLU GLY SER ALA ALA SEQRES 26 A 367 GLU ALA VAL LYS MET LEU THR LEU LEU LYS GLU LYS TYR SEQRES 27 A 367 ASP PRO ILE ARG ARG ASN TYR TRP GLU TYR ARG ILE ARG SEQRES 28 A 367 GLN ILE THR ALA SER ALA ALA HIS ALA THR GLU ILE SER SEQRES 29 A 367 ALA SER ALA SEQRES 1 B 519 MET PRO VAL ILE ALA ALA THR GLY LYS HIS ARG ARG LYS SEQRES 2 B 519 VAL LEU PHE SER SER THR SER GLN GLY LEU SER VAL THR SEQRES 3 B 519 ALA GLY LYS PRO LYS GLY ARG LYS PHE SER ALA ASN LEU SEQRES 4 B 519 GLN VAL ASN SER ARG SER PRO ALA VAL THR SER SER HIS SEQRES 5 B 519 ASN HIS SER SER SER SER GLN SER GLY LYS MET GLY GLU SEQRES 6 B 519 SER GLN VAL HIS PRO GLY ILE PRO ALA LEU PHE ARG GLU SEQRES 7 B 519 PRO PRO LEU ILE HIS ASP LEU LEU SER THR GLU THR THR SEQRES 8 B 519 GLU LEU GLN SER GLU THR VAL ASN LYS CYS LEU PRO LEU SEQRES 9 B 519 LEU LYS GLY ILE HIS ASN SER GLN LYS GLY PRO PHE ASN SEQRES 10 B 519 LYS TYR GLY ILE PRO ALA LEU GLN ARG LYS ASP HIS LEU SEQRES 11 B 519 GLU TYR LEU TYR ASP SER LEU GLU ASP TYR PRO ALA SER SEQRES 12 B 519 PHE VAL ALA LEU ASP ALA SER ARG PRO TRP MET VAL TYR SEQRES 13 B 519 TRP ALA LEU ALA GLY LEU CYS LEU LEU GLY GLU ASP VAL SEQRES 14 B 519 THR ARG PHE ARG GLU ARG VAL ILE SER THR PHE THR ALA SEQRES 15 B 519 ALA GLN ASN SER THR GLY GLY ILE GLY GLY GLY HIS GLY SEQRES 16 B 519 GLN MET SER HIS VAL ALA SER SER TYR ALA ALA VAL LEU SEQRES 17 B 519 SER ILE ALA MET VAL GLY GLY GLU GLU ALA PHE LYS LEU SEQRES 18 B 519 ILE ASP ARG LYS ALA MET TRP LYS TRP LEU GLY LYS LEU SEQRES 19 B 519 LYS GLN PRO ASP GLY GLY PHE THR VAL CYS GLU GLY GLY SEQRES 20 B 519 GLU GLU ASP VAL ARG GLY ALA TYR CYS ALA MET VAL VAL SEQRES 21 B 519 HIS ALA LEU LEU ASP LEU PRO LEU ALA LEU PRO PRO GLU SEQRES 22 B 519 ALA GLU ALA ARG GLN ASN GLY LEU GLU THR PHE THR ASP SEQRES 23 B 519 GLY LEU PRO GLU TYR LEU SER ARG CYS GLN THR TYR GLU SEQRES 24 B 519 GLY GLY ILE SER GLY SER PRO GLY SER GLU ALA HIS GLY SEQRES 25 B 519 ALA TYR ALA PHE CYS ALA LEU ALA CYS LEU CYS LEU LEU SEQRES 26 B 519 GLY ARG PRO GLU VAL VAL VAL PRO ARG TYR MET ASN ILE SEQRES 27 B 519 ALA THR LEU LEU PRO TRP LEU SER ALA ARG GLN TYR ALA SEQRES 28 B 519 PRO GLU GLY GLY PHE SER GLY ARG THR ASN LYS LEU VAL SEQRES 29 B 519 ASP GLY CYS TYR SER HIS TRP VAL GLY ASN CYS TRP PRO SEQRES 30 B 519 LEU VAL GLN ALA ALA LEU ASP GLY THR GLN PRO LEU ALA SEQRES 31 B 519 GLY PRO LYS ARG SER SER VAL GLY ASN LEU TYR SER ARG SEQRES 32 B 519 GLU GLY LEU THR ARG TYR ILE LEU SER CYS CYS GLN CYS SEQRES 33 B 519 LYS LEU GLY GLY LEU ARG ASP LYS PRO GLY LYS HIS PRO SEQRES 34 B 519 ASP SER TYR HIS THR CYS TYR ALA LEU THR GLY LEU SER SEQRES 35 B 519 THR VAL GLN TYR TYR HIS TYR CYS THR ASP SER SER VAL SEQRES 36 B 519 SER SER LYS ASP ASP PHE SER SER ALA PHE SER TRP LYS SEQRES 37 B 519 HIS ASP PRO ASN PHE ALA SER ASP GLY GLN GLY SER ASP SEQRES 38 B 519 ILE GLY VAL PHE THR GLU ASN ASP ARG LEU VAL PRO PHE SEQRES 39 B 519 HIS PRO ILE PHE VAL ILE PRO HIS LYS SER ALA GLU ASP SEQRES 40 B 519 ILE ARG VAL TRP PHE GLU ASN GLN SER PHE ASP LEU HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET FPP B 601 24 HET ZN B 602 1 HET EDO B 603 4 HET EDO B 604 4 HET K B 605 1 HET EDO B 606 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM FPP FARNESYL DIPHOSPHATE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 6 FPP C15 H28 O7 P2 FORMUL 7 ZN ZN 2+ FORMUL 10 K K 1+ FORMUL 12 HOH *700(H2 O) HELIX 1 1 GLY A 3 ASP A 8 1 6 HELIX 2 2 PRO A 9 ALA A 12 5 4 HELIX 3 3 SER A 36 ALA A 52 1 17 HELIX 4 4 SER A 56 ASN A 70 1 15 HELIX 5 5 HIS A 73 LEU A 87 1 15 HELIX 6 6 ASP A 90 HIS A 105 1 16 HELIX 7 7 TYR A 109 SER A 120 1 12 HELIX 8 8 ARG A 131 ASP A 143 1 13 HELIX 9 9 SER A 146 LYS A 161 1 16 HELIX 10 10 HIS A 165 ASP A 179 1 15 HELIX 11 11 ASN A 182 GLY A 195 1 14 HELIX 12 12 PRO A 212 LYS A 216 5 5 HELIX 13 13 ASP A 223 ALA A 241 1 19 HELIX 14 14 ASN A 244 GLY A 259 1 16 HELIX 15 15 PRO A 261 GLU A 264 5 4 HELIX 16 16 TRP A 265 SER A 271 1 7 HELIX 17 17 SER A 289 GLU A 303 1 15 HELIX 18 18 GLY A 308 LYS A 323 1 16 HELIX 19 19 ASP A 325 ILE A 327 5 3 HELIX 20 20 ARG A 328 ILE A 349 1 22 HELIX 21 21 PRO B 73 ARG B 77 5 5 HELIX 22 22 THR B 88 LYS B 106 1 19 HELIX 23 23 GLN B 125 SER B 136 1 12 HELIX 24 24 PRO B 141 ALA B 149 5 9 HELIX 25 25 SER B 150 LEU B 165 1 16 HELIX 26 26 VAL B 169 ARG B 171 5 3 HELIX 27 27 PHE B 172 ALA B 182 1 11 HELIX 28 28 HIS B 199 GLY B 214 1 16 HELIX 29 29 GLY B 215 ILE B 222 1 8 HELIX 30 30 ASP B 223 LYS B 235 1 13 HELIX 31 31 ASP B 250 LEU B 264 1 15 HELIX 32 32 ALA B 274 GLY B 280 5 7 HELIX 33 33 GLY B 287 ARG B 294 1 8 HELIX 34 34 HIS B 311 LEU B 324 1 14 HELIX 35 35 ARG B 327 MET B 336 1 10 HELIX 36 36 ASN B 337 ALA B 347 1 11 HELIX 37 37 CYS B 367 VAL B 372 1 6 HELIX 38 38 ASN B 374 GLY B 385 1 12 HELIX 39 39 SER B 402 CYS B 414 1 13 HELIX 40 40 ASP B 430 GLN B 445 1 16 HELIX 41 41 SER B 462 SER B 466 5 5 HELIX 42 42 THR B 486 ARG B 490 5 5 HELIX 43 43 PRO B 501 ASN B 514 1 14 SHEET 1 A 2 TYR B 446 TYR B 449 0 SHEET 2 A 2 LYS B 468 PRO B 471 -1 O ASP B 470 N TYR B 447 LINK OD2 ASP B 365 ZN ZN B 602 1555 1555 2.04 LINK OD1 ASP B 365 ZN ZN B 602 1555 1555 2.49 LINK SG CYS B 367 ZN ZN B 602 1555 1555 2.34 LINK NE2 HIS B 433 ZN ZN B 602 1555 1555 2.07 LINK ZN ZN B 602 O HOH B1079 1555 1555 2.13 LINK K K B 605 O HOH B1046 1555 1555 3.19 CISPEP 1 GLY B 114 PRO B 115 0 -0.08 CISPEP 2 ALA B 351 PRO B 352 0 11.68 SITE 1 AC1 7 TYR A 35 THR A 43 ARG A 47 EDO A 402 SITE 2 AC1 7 HOH A 561 HOH A 648 ASP B 148 SITE 1 AC2 8 THR A 43 LEU A 46 ARG A 47 MET A 50 SITE 2 AC2 8 HIS A 73 EDO A 401 HIS B 194 GLY B 195 SITE 1 AC3 6 GLN A 116 HOH A 519 HOH A 553 HOH A 644 SITE 2 AC3 6 GLU B 249 SER B 305 SITE 1 AC4 19 TYR A 147 TRP B 153 ARG B 252 TYR B 255 SITE 2 AC4 19 HIS B 311 ALA B 313 TYR B 314 CYS B 317 SITE 3 AC4 19 ARG B 359 LYS B 362 TYR B 368 TRP B 371 SITE 4 AC4 19 TYR B 432 HOH B 702 HOH B 704 HOH B 711 SITE 5 AC4 19 HOH B 722 HOH B 783 HOH B1066 SITE 1 AC5 4 ASP B 365 CYS B 367 HIS B 433 HOH B1079 SITE 1 AC6 3 ASP B 135 ASP B 139 TYR B 140 SITE 1 AC7 7 TYR B 140 MET B 154 TRP B 157 ASP B 430 SITE 2 AC7 7 SER B 431 HOH B 814 HOH B 850 SITE 1 AC8 3 TRP B 153 ALA B 201 ARG B 252 SITE 1 AC9 4 HOH B 728 HOH B 730 HOH B 742 HOH B 857 CRYST1 63.252 90.793 83.138 90.00 110.87 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015810 0.000000 0.006028 0.00000 SCALE2 0.000000 0.011014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012873 0.00000