HEADER OXYGEN STORAGE 14-JAN-88 4MBN TITLE REFINEMENT OF MYOGLOBIN AND CYTOCHROME C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSETER CATODON; SOURCE 3 ORGANISM_COMMON: SPERM WHALE; SOURCE 4 ORGANISM_TAXID: 9755 KEYWDS OXYGEN STORAGE EXPDTA X-RAY DIFFRACTION AUTHOR T.TAKANO REVDAT 6 22-MAY-24 4MBN 1 REMARK REVDAT 5 15-MAR-23 4MBN 1 REMARK REVDAT 4 08-FEB-23 4MBN 1 REMARK SCALE ATOM REVDAT 3 13-JUL-11 4MBN 1 VERSN REVDAT 2 24-FEB-09 4MBN 1 VERSN REVDAT 1 12-JUL-89 4MBN 0 SPRSDE 12-JUL-89 4MBN 2MBN JRNL AUTH T.TAKANO JRNL TITL REFINEMENT OF MYOGLOBIN AND CYTOCHROME C JRNL EDIT S.R.HALL, T.ASHIDA JRNL REF METHODS AND APPLICATIONS IN 262 1984 JRNL REF 2 CRYSTALLOGRAPHIC COMPUTING JRNL PUBL OXFORD UNIVERSITY PRESS, OXFORD, ENGLAND JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.TAKANO REMARK 1 TITL STRUCTURE OF MYOGLOBIN REFINED AT 2.0 ANGSTROMS RESOLUTION. REMARK 1 TITL 2 II. STRUCTURE OF DEOXYMYOGLOBIN FROM SPERM WHALE REMARK 1 REF J.MOL.BIOL. V. 110 569 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.TAKANO REMARK 1 TITL STRUCTURE OF MYOGLOBIN REFINED AT 2.0 ANGSTROMS RESOLUTION. REMARK 1 TITL 2 I. CRYSTALLOGRAPHIC REFINEMENT OF METMYOGLOBIN FROM SPERM REMARK 1 TITL 3 WHALE REMARK 1 REF J.MOL.BIOL. V. 110 537 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH H.C.WATSON REMARK 1 TITL THE STEREOCHEMISTRY OF THE PROTEIN MYOGLOBIN REMARK 1 REF PROG.STEREOCHEM. V. 4 229 1976 REMARK 1 REFN ISSN 0079-6808 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.DIAMOND REMARK 1 TITL A MATHEMATICAL MODEL-BUILDING PROCEDURE FOR PROTEINS REMARK 1 REF ACTA CRYSTALLOGR. V. 21 253 1966 REMARK 1 REFN ISSN 0365-110X REMARK 1 REFERENCE 5 REMARK 1 AUTH R.DIAMOND REMARK 1 TITL A REAL-SPACE REFINEMENT PROCEDURE FOR PROTEINS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 27 436 1971 REMARK 1 REFN ISSN 0108-7673 REMARK 1 REFERENCE 6 REMARK 1 AUTH R.DIAMOND REMARK 1 TITL REAL-SPACE REFINEMENT OF THE STRUCTURE OF HEN EGG-WHITE REMARK 1 TITL 2 LYSOZYME REMARK 1 REF J.MOL.BIOL. V. 82 371 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH C.L.NOBBS,H.C.WATSON,J.C.KENDREW REMARK 1 TITL STRUCTURE OF DEOXYMYOGLOBIN, A CRYSTALLOGRAPHIC STUDY REMARK 1 REF NATURE V. 209 339 1966 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 8 REMARK 1 AUTH G.FERMI REMARK 1 TITL THREE-DIMENSIONAL FOURIER SYNTHESIS OF HUMAN REMARK 1 TITL 2 DEOXYHAEMOGLOBIN AT 2.5 ANGSTROMS, REFINEMENT OF THE ATOMIC REMARK 1 TITL 3 MODEL REMARK 1 REF J.MOL.BIOL. V. 97 237 1975 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 9 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 84 1972 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER SPRING,MD. REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 257 O HOH A 346 1.97 REMARK 500 O HOH A 258 O HOH A 282 2.00 REMARK 500 CGA HEM A 225 O HOH A 314 2.01 REMARK 500 O1A HEM A 225 O HOH A 314 2.02 REMARK 500 CD LYS A 34 O HOH A 342 2.13 REMARK 500 OE2 GLU A 59 O HOH A 321 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 A 216 O HOH A 341 2655 1.19 REMARK 500 NZ LYS A 96 OE1 GLU A 109 1565 1.68 REMARK 500 NZ LYS A 34 O HOH A 320 2645 1.79 REMARK 500 NH1 ARG A 139 O LYS A 147 2545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 7 NE1 TRP A 7 CE2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 122 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 71.73 -151.63 REMARK 500 ALA A 94 -70.18 -71.82 REMARK 500 HIS A 119 59.23 -143.49 REMARK 500 GLN A 152 85.55 -2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 4 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 117 10.36 REMARK 500 GLY A 121 10.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SO4 A 216 REMARK 610 SO4 A 224 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 225 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 225 NA 92.1 REMARK 620 3 HEM A 225 NB 94.3 91.6 REMARK 620 4 HEM A 225 NC 96.8 170.8 90.0 REMARK 620 5 HEM A 225 ND 94.6 89.6 171.0 87.4 REMARK 620 6 HOH A 226 O 174.6 88.1 91.1 82.7 80.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 225 DBREF 4MBN A 1 153 UNP P02185 MYG_PHYCA 1 153 SEQRES 1 A 153 VAL LEU SER GLU GLY GLU TRP GLN LEU VAL LEU HIS VAL SEQRES 2 A 153 TRP ALA LYS VAL GLU ALA ASP VAL ALA GLY HIS GLY GLN SEQRES 3 A 153 ASP ILE LEU ILE ARG LEU PHE LYS SER HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP ARG PHE LYS HIS LEU LYS THR GLU SEQRES 5 A 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 VAL THR VAL LEU THR ALA LEU GLY ALA ILE LEU LYS LYS SEQRES 7 A 153 LYS GLY HIS HIS GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER GLU ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 A 153 ARG HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET ASN LYS ALA LEU GLU LEU PHE ARG LYS ASP ILE ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY TYR GLN GLY HET SO4 A 216 1 HET SO4 A 224 1 HET HEM A 225 43 HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 HOH *121(H2 O) HELIX 1 A SER A 3 GLU A 18 1 16 HELIX 2 B ASP A 20 SER A 35 1 16 HELIX 3 C HIS A 36 LYS A 42 1 7 HELIX 4 D THR A 51 ALA A 57 1 7 HELIX 5 E SER A 58 LYS A 77 1 20 HELIX 6 F LEU A 86 THR A 95 1BREAK AT PRO 88 10 HELIX 7 G PRO A 100 ARG A 118 1 19 HELIX 8 H GLY A 124 LEU A 149 1 26 LINK NE2 HIS A 93 FE HEM A 225 1555 1555 2.17 LINK FE HEM A 225 O HOH A 226 1555 1555 2.10 SITE 1 AC1 1 THR A 67 SITE 1 AC2 18 THR A 39 LYS A 42 PHE A 43 ARG A 45 SITE 2 AC2 18 HIS A 64 THR A 67 VAL A 68 SER A 92 SITE 3 AC2 18 HIS A 93 HIS A 97 ILE A 99 TYR A 103 SITE 4 AC2 18 GLN A 128 HOH A 226 HOH A 234 HOH A 300 SITE 5 AC2 18 HOH A 314 HOH A 334 CRYST1 64.560 30.970 34.860 90.00 105.86 90.00 P 1 21 1 2 ORIGX1 0.961959 0.000000 0.273295 0.00000 ORIGX2 0.000000 1.000010 0.000000 0.00000 ORIGX3 -0.273303 0.000000 0.961934 0.00000 SCALE1 0.015489 0.000000 0.004401 0.00000 SCALE2 0.000000 0.032289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029821 0.00000 TER 1218 GLY A 153 HETATM 1219 S SO4 A 216 32.911 29.840 4.463 1.00 13.46 S HETATM 1220 S SO4 A 224 21.563 32.636 8.918 1.00 14.93 S HETATM 1221 CHA HEM A 225 16.173 31.159 5.110 1.00 8.33 C HETATM 1222 CHB HEM A 225 14.012 28.023 8.117 1.00 11.37 C HETATM 1223 CHC HEM A 225 13.635 24.848 4.458 1.00 11.70 C HETATM 1224 CHD HEM A 225 15.728 28.007 1.468 1.00 14.07 C HETATM 1225 C1A HEM A 225 15.607 30.594 6.240 1.00 11.16 C HETATM 1226 C2A HEM A 225 15.519 31.231 7.492 1.00 11.01 C HETATM 1227 C3A HEM A 225 14.915 30.325 8.369 1.00 11.34 C HETATM 1228 C4A HEM A 225 14.615 29.165 7.625 1.00 11.56 C HETATM 1229 CMA HEM A 225 14.588 30.556 9.825 1.00 10.87 C HETATM 1230 CAA HEM A 225 15.940 32.655 7.787 1.00 14.72 C HETATM 1231 CBA HEM A 225 14.783 33.667 7.885 1.00 13.08 C HETATM 1232 CGA HEM A 225 13.914 33.609 6.608 1.00 13.70 C HETATM 1233 O1A HEM A 225 12.703 33.760 6.683 1.00 15.34 O HETATM 1234 O2A HEM A 225 14.421 33.765 5.408 1.00 14.24 O HETATM 1235 C1B HEM A 225 13.727 26.891 7.380 1.00 10.20 C HETATM 1236 C2B HEM A 225 13.174 25.739 7.899 1.00 11.46 C HETATM 1237 C3B HEM A 225 13.103 24.814 6.825 1.00 14.39 C HETATM 1238 C4B HEM A 225 13.553 25.457 5.697 1.00 11.47 C HETATM 1239 CMB HEM A 225 12.789 25.592 9.367 1.00 10.70 C HETATM 1240 CAB HEM A 225 12.750 23.469 6.822 1.00 11.72 C HETATM 1241 CBB HEM A 225 12.495 22.729 7.973 1.00 11.72 C HETATM 1242 C1C HEM A 225 14.156 25.411 3.314 1.00 12.01 C HETATM 1243 C2C HEM A 225 14.337 24.749 2.091 1.00 12.93 C HETATM 1244 C3C HEM A 225 14.989 25.682 1.234 1.00 14.89 C HETATM 1245 C4C HEM A 225 15.119 26.867 1.958 1.00 12.40 C HETATM 1246 CMC HEM A 225 13.919 23.300 1.835 1.00 10.37 C HETATM 1247 CAC HEM A 225 15.468 25.512 -0.068 1.00 13.42 C HETATM 1248 CBC HEM A 225 15.370 24.286 -0.769 1.00 12.17 C HETATM 1249 C1D HEM A 225 16.025 29.132 2.199 1.00 15.10 C HETATM 1250 C2D HEM A 225 16.730 30.225 1.696 1.00 12.57 C HETATM 1251 C3D HEM A 225 16.926 31.103 2.753 1.00 14.74 C HETATM 1252 C4D HEM A 225 16.255 30.568 3.864 1.00 12.66 C HETATM 1253 CMD HEM A 225 17.178 30.394 0.252 1.00 9.06 C HETATM 1254 CAD HEM A 225 17.783 32.355 2.704 1.00 12.53 C HETATM 1255 CBD HEM A 225 19.272 32.024 2.847 1.00 12.19 C HETATM 1256 CGD HEM A 225 20.113 33.285 2.739 1.00 11.83 C HETATM 1257 O1D HEM A 225 20.376 33.757 1.628 1.00 13.11 O HETATM 1258 O2D HEM A 225 20.346 34.014 3.797 1.00 13.75 O HETATM 1259 NA HEM A 225 15.026 29.349 6.330 1.00 11.73 N HETATM 1260 NB HEM A 225 13.952 26.722 6.032 1.00 11.16 N HETATM 1261 NC HEM A 225 14.651 26.676 3.235 1.00 12.40 N HETATM 1262 ND HEM A 225 15.735 29.346 3.530 1.00 10.84 N HETATM 1263 FE HEM A 225 14.681 28.078 4.808 1.00 10.77 FE HETATM 1264 O HOH A 226 16.623 27.336 5.077 1.00 11.04 O HETATM 1265 O HOH A 227 5.157 12.263 5.188 1.00 14.40 O HETATM 1266 O HOH A 228 -6.118 32.169 7.614 1.00 16.42 O HETATM 1267 O HOH A 229 16.397 14.891 0.936 1.00 14.10 O HETATM 1268 O HOH A 230 16.948 8.213 26.945 1.00 16.79 O HETATM 1269 O HOH A 231 27.815 31.449 -3.875 1.00 12.17 O HETATM 1270 O HOH A 232 16.286 32.291 -3.441 1.00 13.82 O HETATM 1271 O HOH A 233 19.308 32.317 -2.689 1.00 13.61 O HETATM 1272 O HOH A 234 20.857 32.340 -0.321 1.00 15.26 O HETATM 1273 O HOH A 235 8.857 27.261 21.006 1.00 13.48 O HETATM 1274 O HOH A 236 11.848 3.408 19.481 1.00 15.48 O HETATM 1275 O HOH A 237 -5.083 28.871 7.347 1.00 16.72 O HETATM 1276 O HOH A 238 14.873 15.375 -6.469 1.00 13.96 O HETATM 1277 O HOH A 239 -4.732 32.470 10.143 1.00 18.93 O HETATM 1278 O HOH A 240 -1.337 33.755 9.106 1.00 16.52 O HETATM 1279 O HOH A 241 9.241 3.323 21.992 1.00 17.03 O HETATM 1280 O HOH A 242 16.115 34.061 -1.134 1.00 15.93 O HETATM 1281 O HOH A 243 -8.229 34.195 11.535 1.00 14.55 O HETATM 1282 O HOH A 244 -2.588 34.985 7.647 1.00 16.24 O HETATM 1283 O HOH A 245 4.231 6.380 16.246 1.00 11.38 O HETATM 1284 O HOH A 246 23.921 7.578 6.600 1.00 14.43 O HETATM 1285 O HOH A 247 1.744 24.800 23.197 1.00 16.45 O HETATM 1286 O HOH A 248 -2.338 25.084 24.726 1.00 16.96 O HETATM 1287 O HOH A 249 -6.331 23.652 19.706 1.00 16.75 O HETATM 1288 O HOH A 250 -3.628 24.163 8.285 1.00 13.55 O HETATM 1289 O HOH A 251 -4.230 26.942 10.599 1.00 17.41 O HETATM 1290 O HOH A 252 16.739 11.188 0.194 1.00 14.80 O HETATM 1291 O HOH A 253 15.490 9.307 3.245 1.00 17.70 O HETATM 1292 O HOH A 254 -9.177 36.539 9.719 1.00 16.89 O HETATM 1293 O HOH A 255 20.175 15.587 25.008 1.00 14.85 O HETATM 1294 O HOH A 256 24.013 22.202 20.526 1.00 13.99 O HETATM 1295 O HOH A 257 25.693 23.442 18.521 1.00 14.46 O HETATM 1296 O HOH A 258 31.347 16.781 19.659 1.00 18.27 O HETATM 1297 O HOH A 259 28.709 16.114 11.213 1.00 14.88 O HETATM 1298 O HOH A 260 17.793 8.110 -1.016 1.00 16.01 O HETATM 1299 O HOH A 261 20.475 9.021 -1.538 1.00 15.89 O HETATM 1300 O HOH A 262 23.077 10.772 -4.381 1.00 15.64 O HETATM 1301 O HOH A 263 24.970 14.487 -5.736 1.00 13.00 O HETATM 1302 O HOH A 264 25.035 18.076 -5.302 1.00 14.15 O HETATM 1303 O HOH A 265 17.344 15.290 -7.860 1.00 14.13 O HETATM 1304 O HOH A 266 12.995 14.347 -7.409 1.00 13.26 O HETATM 1305 O HOH A 267 19.522 30.803 -7.581 1.00 15.06 O HETATM 1306 O HOH A 268 16.306 31.586 -8.610 1.00 19.30 O HETATM 1307 O HOH A 269 33.892 14.971 -1.579 1.00 14.22 O HETATM 1308 O HOH A 270 36.399 15.578 -1.671 1.00 12.94 O HETATM 1309 O HOH A 271 33.297 24.551 12.979 1.00 14.08 O HETATM 1310 O HOH A 272 -3.334 23.220 15.858 1.00 18.20 O HETATM 1311 O HOH A 273 -6.694 21.275 17.284 1.00 19.01 O HETATM 1312 O HOH A 274 0.689 30.517 18.334 1.00 18.95 O HETATM 1313 O HOH A 275 -1.403 26.824 12.364 1.00 15.80 O HETATM 1314 O HOH A 276 5.933 21.271 -4.569 1.00 13.22 O HETATM 1315 O HOH A 277 12.397 38.063 -4.372 1.00 17.75 O HETATM 1316 O HOH A 278 7.957 9.248 5.191 1.00 18.06 O HETATM 1317 O HOH A 279 24.110 8.739 3.540 1.00 16.27 O HETATM 1318 O HOH A 280 24.993 13.632 17.775 1.00 17.14 O HETATM 1319 O HOH A 281 28.522 14.530 18.524 1.00 15.36 O HETATM 1320 O HOH A 282 31.678 14.924 20.312 1.00 14.95 O HETATM 1321 O HOH A 283 23.465 14.412 19.801 1.00 12.56 O HETATM 1322 O HOH A 284 17.208 1.830 13.956 1.00 17.07 O HETATM 1323 O HOH A 285 15.695 1.432 18.507 1.00 15.88 O HETATM 1324 O HOH A 286 14.115 1.666 23.230 1.00 15.85 O HETATM 1325 O HOH A 287 12.558 4.957 23.070 1.00 18.15 O HETATM 1326 O HOH A 288 23.145 35.779 -1.628 1.00 16.08 O HETATM 1327 O HOH A 289 23.030 5.459 3.576 1.00 16.59 O HETATM 1328 O HOH A 290 6.265 24.998 24.999 1.00 15.10 O HETATM 1329 O HOH A 291 29.190 10.175 8.877 1.00 17.65 O HETATM 1330 O HOH A 292 25.991 9.564 9.824 1.00 16.09 O HETATM 1331 O HOH A 293 11.750 13.119 26.753 1.00 15.06 O HETATM 1332 O HOH A 294 15.621 12.902 25.642 1.00 12.93 O HETATM 1333 O HOH A 295 4.148 22.167 16.106 1.00 12.70 O HETATM 1334 O HOH A 296 -8.158 18.627 17.282 1.00 15.84 O HETATM 1335 O HOH A 297 -8.335 17.226 14.314 1.00 16.53 O HETATM 1336 O HOH A 298 -5.186 20.073 19.588 1.00 14.98 O HETATM 1337 O HOH A 299 24.383 35.914 11.873 1.00 14.87 O HETATM 1338 O HOH A 300 16.725 35.512 5.558 1.00 15.69 O HETATM 1339 O HOH A 301 13.818 1.173 12.974 1.00 14.84 O HETATM 1340 O HOH A 302 25.720 26.259 -10.459 1.00 15.87 O HETATM 1341 O HOH A 303 2.581 27.445 -7.702 1.00 14.36 O HETATM 1342 O HOH A 304 5.327 36.278 -7.885 1.00 14.88 O HETATM 1343 O HOH A 305 18.871 32.938 -7.585 1.00 19.07 O HETATM 1344 O HOH A 306 14.097 12.650 -0.258 1.00 15.78 O HETATM 1345 O HOH A 307 9.907 29.319 11.412 1.00 15.94 O HETATM 1346 O HOH A 308 10.480 28.855 13.863 1.00 13.46 O HETATM 1347 O HOH A 309 19.628 29.627 17.461 1.00 17.31 O HETATM 1348 O HOH A 310 16.521 30.385 13.430 1.00 15.83 O HETATM 1349 O HOH A 311 10.721 30.979 17.010 1.00 16.36 O HETATM 1350 O HOH A 312 13.922 30.429 16.857 1.00 16.05 O HETATM 1351 O HOH A 313 9.545 30.407 19.769 1.00 17.25 O HETATM 1352 O HOH A 314 13.101 31.797 6.918 1.00 16.35 O HETATM 1353 O HOH A 315 28.588 31.807 -6.128 1.00 16.92 O HETATM 1354 O HOH A 316 0.640 31.915 -8.870 1.00 14.24 O HETATM 1355 O HOH A 317 3.569 35.928 13.677 1.00 14.34 O HETATM 1356 O HOH A 318 -5.331 27.736 2.349 1.00 14.67 O HETATM 1357 O HOH A 319 -6.075 28.373 10.150 1.00 14.99 O HETATM 1358 O HOH A 320 35.722 27.250 3.400 1.00 14.33 O HETATM 1359 O HOH A 321 33.242 25.030 9.231 1.00 14.01 O HETATM 1360 O HOH A 322 29.078 24.199 20.386 1.00 14.56 O HETATM 1361 O HOH A 323 -4.989 23.071 5.662 1.00 15.81 O HETATM 1362 O HOH A 324 -2.704 21.838 3.847 1.00 14.15 O HETATM 1363 O HOH A 325 27.372 21.270 19.933 1.00 16.09 O HETATM 1364 O HOH A 326 36.274 18.802 4.097 1.00 13.71 O HETATM 1365 O HOH A 327 -5.901 17.388 10.722 1.00 16.57 O HETATM 1366 O HOH A 328 24.913 14.395 5.231 1.00 16.77 O HETATM 1367 O HOH A 329 9.552 12.579 -1.367 1.00 15.61 O HETATM 1368 O HOH A 330 29.915 28.595 -9.567 1.00 17.52 O HETATM 1369 O HOH A 331 18.752 10.740 25.495 1.00 15.86 O HETATM 1370 O HOH A 332 13.907 10.014 4.697 1.00 15.01 O HETATM 1371 O HOH A 333 6.549 38.360 7.946 1.00 15.87 O HETATM 1372 O HOH A 334 10.643 33.417 8.972 1.00 15.44 O HETATM 1373 O HOH A 335 6.552 29.814 -3.691 1.00 15.31 O HETATM 1374 O HOH A 336 -1.369 26.083 15.037 1.00 15.12 O HETATM 1375 O HOH A 337 34.226 25.392 1.533 1.00 14.98 O HETATM 1376 O HOH A 338 1.566 21.692 -1.465 1.00 15.46 O HETATM 1377 O HOH A 339 4.551 14.972 -5.076 1.00 15.14 O HETATM 1378 O HOH A 340 0.118 14.851 11.076 1.00 16.21 O HETATM 1379 O HOH A 341 31.626 13.199 -4.194 1.00 15.78 O HETATM 1380 O HOH A 342 27.241 12.829 -0.860 1.00 16.43 O HETATM 1381 O HOH A 343 15.085 7.610 6.581 1.00 15.78 O HETATM 1382 O HOH A 344 16.009 7.717 21.372 1.00 15.76 O HETATM 1383 O HOH A 345 27.651 12.861 11.438 1.00 16.02 O HETATM 1384 O HOH A 346 26.636 21.911 17.716 1.00 15.18 O CONECT 740 1263 CONECT 1221 1225 1252 CONECT 1222 1228 1235 CONECT 1223 1238 1242 CONECT 1224 1245 1249 CONECT 1225 1221 1226 1259 CONECT 1226 1225 1227 1230 CONECT 1227 1226 1228 1229 CONECT 1228 1222 1227 1259 CONECT 1229 1227 CONECT 1230 1226 1231 CONECT 1231 1230 1232 CONECT 1232 1231 1233 1234 CONECT 1233 1232 CONECT 1234 1232 CONECT 1235 1222 1236 1260 CONECT 1236 1235 1237 1239 CONECT 1237 1236 1238 1240 CONECT 1238 1223 1237 1260 CONECT 1239 1236 CONECT 1240 1237 1241 CONECT 1241 1240 CONECT 1242 1223 1243 1261 CONECT 1243 1242 1244 1246 CONECT 1244 1243 1245 1247 CONECT 1245 1224 1244 1261 CONECT 1246 1243 CONECT 1247 1244 1248 CONECT 1248 1247 CONECT 1249 1224 1250 1262 CONECT 1250 1249 1251 1253 CONECT 1251 1250 1252 1254 CONECT 1252 1221 1251 1262 CONECT 1253 1250 CONECT 1254 1251 1255 CONECT 1255 1254 1256 CONECT 1256 1255 1257 1258 CONECT 1257 1256 CONECT 1258 1256 CONECT 1259 1225 1228 1263 CONECT 1260 1235 1238 1263 CONECT 1261 1242 1245 1263 CONECT 1262 1249 1252 1263 CONECT 1263 740 1259 1260 1261 CONECT 1263 1262 1264 CONECT 1264 1263 MASTER 402 0 3 8 0 0 6 6 1383 1 46 12 END