HEADER OXIDOREDUCTASE 21-AUG-13 4MCU TITLE CRYSTAL STRUCTURE OF DISULFIDE OXIDOREDUCTASE FROM KLEBSIELLA TITLE 2 PNEUMONIAE IN REDUCED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 507522; SOURCE 4 STRAIN: 342; SOURCE 5 GENE: DSBA, KPK_5512; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDATIVE FOLDING, VIRULENCE FACTOR MATURATION, THIOREDOXIN FOLD, KEYWDS 2 DSBA, DISULFIDE OXIDASE, DSBB, PERIPLASMIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.KURTH,L.PREMKUMAR,J.L.MARTIN REVDAT 3 20-SEP-23 4MCU 1 REMARK SEQADV REVDAT 2 15-NOV-17 4MCU 1 REMARK REVDAT 1 27-NOV-13 4MCU 0 JRNL AUTH F.KURTH,K.RIMMER,L.PREMKUMAR,B.MOHANTY,W.DUPREZ,M.A.HALILI, JRNL AUTH 2 S.R.SHOULDICE,B.HERAS,D.P.FAIRLIE,M.J.SCANLON,J.L.MARTIN JRNL TITL COMPARATIVE SEQUENCE, STRUCTURE AND REDOX ANALYSES OF JRNL TITL 2 KLEBSIELLA PNEUMONIAE DSBA SHOW THAT ANTI-VIRULENCE TARGET JRNL TITL 3 DSBA ENZYMES FALL INTO DISTINCT CLASSES. JRNL REF PLOS ONE V. 8 80210 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24244651 JRNL DOI 10.1371/JOURNAL.PONE.0080210 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 94693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3857 - 5.3919 0.95 4483 221 0.1379 0.1604 REMARK 3 2 5.3919 - 4.2826 0.94 4471 242 0.1122 0.1682 REMARK 3 3 4.2826 - 3.7421 0.94 4475 284 0.1225 0.1706 REMARK 3 4 3.7421 - 3.4003 0.95 4461 241 0.1311 0.1768 REMARK 3 5 3.4003 - 3.1568 0.95 4525 223 0.1597 0.1983 REMARK 3 6 3.1568 - 2.9708 0.95 4509 249 0.1704 0.1898 REMARK 3 7 2.9708 - 2.8221 0.95 4513 238 0.1819 0.2242 REMARK 3 8 2.8221 - 2.6993 0.94 4422 264 0.1809 0.2074 REMARK 3 9 2.6993 - 2.5954 0.94 4475 274 0.1968 0.2194 REMARK 3 10 2.5954 - 2.5059 0.95 4539 228 0.1959 0.1903 REMARK 3 11 2.5059 - 2.4275 0.95 4481 225 0.2051 0.2407 REMARK 3 12 2.4275 - 2.3582 0.96 4544 212 0.2014 0.2533 REMARK 3 13 2.3582 - 2.2961 0.96 4535 195 0.2159 0.2607 REMARK 3 14 2.2961 - 2.2401 0.94 4465 265 0.2256 0.2558 REMARK 3 15 2.2401 - 2.1892 0.95 4505 256 0.2259 0.2420 REMARK 3 16 2.1892 - 2.1426 0.95 4487 216 0.2331 0.2587 REMARK 3 17 2.1426 - 2.0998 0.95 4536 226 0.2377 0.2750 REMARK 3 18 2.0998 - 2.0601 0.94 4475 265 0.2402 0.2816 REMARK 3 19 2.0601 - 2.0233 0.95 4497 233 0.2692 0.2839 REMARK 3 20 2.0233 - 1.9891 0.94 4466 258 0.2786 0.3191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 9003 REMARK 3 ANGLE : 0.740 12225 REMARK 3 CHIRALITY : 0.042 1368 REMARK 3 PLANARITY : 0.003 1592 REMARK 3 DIHEDRAL : 15.233 3275 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 34.4831 -33.7038 -4.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.1551 REMARK 3 T33: 0.1730 T12: -0.0331 REMARK 3 T13: -0.0020 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.1846 L22: 1.9030 REMARK 3 L33: 1.5216 L12: 0.5310 REMARK 3 L13: 0.0476 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.0001 S13: -0.0557 REMARK 3 S21: -0.0000 S22: 0.0490 S23: 0.1446 REMARK 3 S31: 0.1153 S32: -0.0472 S33: -0.1130 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -1.1619 -66.0160 -16.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.1723 REMARK 3 T33: 0.2020 T12: -0.0316 REMARK 3 T13: -0.0070 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0953 L22: 2.1697 REMARK 3 L33: 2.1496 L12: 0.4337 REMARK 3 L13: -0.2827 L23: -0.4857 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.0498 S13: -0.0864 REMARK 3 S21: 0.0416 S22: 0.0685 S23: 0.1108 REMARK 3 S31: 0.0891 S32: -0.0836 S33: -0.0357 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 50.5072 -40.7321 -29.2817 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.2266 REMARK 3 T33: 0.1908 T12: 0.0156 REMARK 3 T13: 0.0045 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.3579 L22: 2.6509 REMARK 3 L33: 1.7695 L12: 1.1031 REMARK 3 L13: 0.0212 L23: 0.2079 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.0739 S13: -0.1847 REMARK 3 S21: 0.0071 S22: 0.0634 S23: -0.2260 REMARK 3 S31: 0.2088 S32: 0.1450 S33: -0.0657 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 8.8589 -64.2910 -40.4884 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.2722 REMARK 3 T33: 0.2391 T12: -0.0070 REMARK 3 T13: -0.0180 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.7112 L22: 1.6191 REMARK 3 L33: 3.6540 L12: 0.1452 REMARK 3 L13: 0.3851 L23: 0.2436 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.1705 S13: -0.3463 REMARK 3 S21: -0.1300 S22: 0.0846 S23: -0.1603 REMARK 3 S31: 0.3580 S32: 0.4185 S33: -0.0694 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): 36.5246 -86.1349 -14.8850 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.2408 REMARK 3 T33: 0.2622 T12: -0.0255 REMARK 3 T13: -0.0102 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.6835 L22: 2.2837 REMARK 3 L33: 1.8689 L12: 0.9470 REMARK 3 L13: -0.1057 L23: 0.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.1852 S13: 0.1209 REMARK 3 S21: 0.0723 S22: 0.0706 S23: 0.1363 REMARK 3 S31: -0.0720 S32: -0.0236 S33: -0.0452 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): 32.9844 -79.4615 10.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.4559 T22: 0.2476 REMARK 3 T33: 0.3197 T12: -0.0130 REMARK 3 T13: 0.0015 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.0669 L22: 0.7411 REMARK 3 L33: 1.3154 L12: -0.2743 REMARK 3 L13: 0.1570 L23: -0.2623 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.1369 S13: 0.0784 REMARK 3 S21: 0.2489 S22: 0.0309 S23: 0.0981 REMARK 3 S31: -0.1352 S32: -0.1174 S33: -0.0663 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED TWIN TARGET FUNCTION (H,-H-K,-L) REMARK 3 IMPLEMENTED IN PHENIX.REFINE REMARK 4 REMARK 4 4MCU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 53.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SUCCINIC ACID, POLYETHYLENE GLYCOL REMARK 280 1500 AND 2-METHYL-2,4-PENTANEDIOL, PH 5.3, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.14067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.07033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 LYS A 188 REMARK 465 LYS B 188 REMARK 465 SER C -1 REMARK 465 ASN C 0 REMARK 465 ALA C 1 REMARK 465 LYS C 188 REMARK 465 SER D -1 REMARK 465 ASN D 0 REMARK 465 ALA D 1 REMARK 465 GLN D 2 REMARK 465 LYS D 188 REMARK 465 SER F -1 REMARK 465 ASN F 0 REMARK 465 ALA F 1 REMARK 465 GLN F 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LYS D 182 CG CD CE NZ REMARK 470 LYS F 187 CG CD CE NZ REMARK 470 LYS F 188 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN E 136 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO E 51 HG1 THR E 54 1.59 REMARK 500 OH TYR A 34 OE1 GLU A 93 2.18 REMARK 500 OE2 GLU A 19 O HOH A 274 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 1 157.01 75.91 REMARK 500 LYS A 7 -88.48 -96.32 REMARK 500 LYS A 97 -65.98 -91.73 REMARK 500 LYS A 157 -32.59 -138.08 REMARK 500 LYS B 7 -81.44 -109.05 REMARK 500 LYS B 97 -63.75 -96.94 REMARK 500 LYS C 7 -91.54 -106.41 REMARK 500 LYS D 7 -92.55 -116.64 REMARK 500 VAL D 39 -69.14 -93.66 REMARK 500 GLN D 147 -73.48 -95.76 REMARK 500 LYS E 7 -84.51 -92.31 REMARK 500 LYS F 7 -85.83 -101.50 REMARK 500 GLN F 145 71.61 59.94 REMARK 500 GLN F 147 -62.22 -123.01 REMARK 500 ASP F 166 92.03 -68.99 REMARK 500 THR F 167 34.82 -85.56 REMARK 500 SER F 168 -78.10 -88.29 REMARK 500 LYS F 187 47.37 -88.52 REMARK 500 REMARK 500 REMARK: NULL DBREF 4MCU A 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 DBREF 4MCU B 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 DBREF 4MCU C 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 DBREF 4MCU D 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 DBREF 4MCU E 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 DBREF 4MCU F 1 188 UNP B5XZJ6 B5XZJ6_KLEP3 20 207 SEQADV 4MCU SER A -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN A 0 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU SER B -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN B 0 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU SER C -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN C 0 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU SER D -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN D 0 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU SER E -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN E 0 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU SER F -1 UNP B5XZJ6 EXPRESSION TAG SEQADV 4MCU ASN F 0 UNP B5XZJ6 EXPRESSION TAG SEQRES 1 A 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 A 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 A 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 A 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 A 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 A 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 A 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 A 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 A 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 A 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 A 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 A 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 A 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 A 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 A 190 VAL LYS GLN LEU VAL GLU LYS LYS SEQRES 1 B 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 B 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 B 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 B 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 B 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 B 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 B 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 B 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 B 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 B 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 B 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 B 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 B 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 B 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 B 190 VAL LYS GLN LEU VAL GLU LYS LYS SEQRES 1 C 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 C 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 C 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 C 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 C 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 C 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 C 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 C 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 C 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 C 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 C 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 C 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 C 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 C 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 C 190 VAL LYS GLN LEU VAL GLU LYS LYS SEQRES 1 D 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 D 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 D 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 D 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 D 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 D 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 D 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 D 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 D 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 D 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 D 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 D 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 D 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 D 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 D 190 VAL LYS GLN LEU VAL GLU LYS LYS SEQRES 1 E 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 E 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 E 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 E 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 E 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 E 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 E 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 E 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 E 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 E 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 E 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 E 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 E 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 E 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 E 190 VAL LYS GLN LEU VAL GLU LYS LYS SEQRES 1 F 190 SER ASN ALA GLN ILE THR ASP GLY LYS GLN TYR ILE THR SEQRES 2 F 190 LEU ASP LYS PRO ILE ALA GLY GLU PRO GLN VAL LEU GLU SEQRES 3 F 190 PHE PHE SER PHE TYR CYS PRO HIS CYS TYR GLN PHE GLU SEQRES 4 F 190 GLU VAL LEU HIS VAL SER ASP ASN VAL ARG GLN LYS LEU SEQRES 5 F 190 PRO GLU GLY THR LYS MET THR LYS TYR HIS VAL GLU PHE SEQRES 6 F 190 LEU GLY PRO LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 F 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP LYS ILE THR ALA SEQRES 8 F 190 PRO MET PHE GLU ALA VAL GLN LYS THR GLN THR VAL GLN SEQRES 9 F 190 SER VAL ALA ASP ILE ARG LYS VAL PHE VAL ASP ALA GLY SEQRES 10 F 190 VAL LYS GLY GLU ASP TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 F 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 F 190 ALA ASP LEU GLN LEU GLN GLY VAL PRO ALA MET TYR VAL SEQRES 13 F 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 F 190 SER ASN MET ASP VAL PHE VAL ALA GLN TYR ALA ASP THR SEQRES 15 F 190 VAL LYS GLN LEU VAL GLU LYS LYS FORMUL 7 HOH *371(H2 O) HELIX 1 1 CYS A 30 VAL A 39 1 10 HELIX 2 2 HIS A 41 LEU A 50 1 10 HELIX 3 3 LEU A 67 GLY A 82 1 16 HELIX 4 4 VAL A 83 LYS A 97 1 15 HELIX 5 5 SER A 103 GLY A 115 1 13 HELIX 6 6 LYS A 117 ASN A 126 1 10 HELIX 7 7 SER A 127 LEU A 144 1 18 HELIX 8 8 PRO A 162 MET A 165 5 4 HELIX 9 9 ASN A 169 GLU A 186 1 18 HELIX 10 10 CYS B 30 VAL B 39 1 10 HELIX 11 11 HIS B 41 LYS B 49 1 9 HELIX 12 12 LEU B 67 GLY B 82 1 16 HELIX 13 13 VAL B 83 LYS B 97 1 15 HELIX 14 14 SER B 103 ALA B 114 1 12 HELIX 15 15 LYS B 117 ASN B 126 1 10 HELIX 16 16 SER B 127 LEU B 144 1 18 HELIX 17 17 PRO B 162 MET B 165 5 4 HELIX 18 18 ASN B 169 LYS B 187 1 19 HELIX 19 19 CYS C 30 VAL C 39 1 10 HELIX 20 20 HIS C 41 LYS C 49 1 9 HELIX 21 21 LEU C 67 GLY C 82 1 16 HELIX 22 22 VAL C 83 LYS C 97 1 15 HELIX 23 23 SER C 103 ALA C 114 1 12 HELIX 24 24 LYS C 117 ASN C 126 1 10 HELIX 25 25 SER C 127 LEU C 144 1 18 HELIX 26 26 PRO C 162 MET C 165 5 4 HELIX 27 27 ASN C 169 GLU C 186 1 18 HELIX 28 28 CYS D 30 GLU D 38 1 9 HELIX 29 29 HIS D 41 GLN D 48 1 8 HELIX 30 30 LEU D 67 GLY D 82 1 16 HELIX 31 31 VAL D 83 GLN D 96 1 14 HELIX 32 32 SER D 103 ALA D 114 1 12 HELIX 33 33 LYS D 117 ASN D 126 1 10 HELIX 34 34 SER D 127 LEU D 144 1 18 HELIX 35 35 PRO D 162 MET D 165 5 4 HELIX 36 36 ASP D 171 LYS D 187 1 17 HELIX 37 37 CYS E 30 VAL E 39 1 10 HELIX 38 38 HIS E 41 LYS E 49 1 9 HELIX 39 39 LEU E 67 GLY E 82 1 16 HELIX 40 40 VAL E 83 GLN E 96 1 14 HELIX 41 41 SER E 103 GLY E 115 1 13 HELIX 42 42 LYS E 117 ASN E 126 1 10 HELIX 43 43 SER E 127 LEU E 144 1 18 HELIX 44 44 PRO E 162 MET E 165 5 4 HELIX 45 45 ASN E 169 GLU E 186 1 18 HELIX 46 46 CYS F 30 VAL F 39 1 10 HELIX 47 47 HIS F 41 LEU F 50 1 10 HELIX 48 48 LEU F 67 GLY F 82 1 16 HELIX 49 49 VAL F 83 LYS F 97 1 15 HELIX 50 50 VAL F 104 ASP F 113 1 10 HELIX 51 51 LYS F 117 ASN F 126 1 10 HELIX 52 52 SER F 127 LEU F 144 1 18 HELIX 53 53 PRO F 162 MET F 165 5 4 HELIX 54 54 ASN F 169 LYS F 187 1 19 SHEET 1 A 5 TYR A 9 THR A 11 0 SHEET 2 A 5 TYR A 158 LEU A 160 -1 O GLN A 159 N ILE A 10 SHEET 3 A 5 ALA A 151 VAL A 154 -1 N VAL A 154 O TYR A 158 SHEET 4 A 5 VAL A 22 PHE A 26 -1 N LEU A 23 O TYR A 153 SHEET 5 A 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 B 5 TYR B 9 THR B 11 0 SHEET 2 B 5 TYR B 158 LEU B 160 -1 O GLN B 159 N ILE B 10 SHEET 3 B 5 ALA B 151 VAL B 154 -1 N VAL B 154 O TYR B 158 SHEET 4 B 5 VAL B 22 PHE B 26 -1 N LEU B 23 O TYR B 153 SHEET 5 B 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SHEET 1 C 5 TYR C 9 THR C 11 0 SHEET 2 C 5 TYR C 158 LEU C 160 -1 O GLN C 159 N ILE C 10 SHEET 3 C 5 ALA C 151 VAL C 154 -1 N VAL C 154 O TYR C 158 SHEET 4 C 5 VAL C 22 PHE C 26 -1 N PHE C 25 O ALA C 151 SHEET 5 C 5 MET C 56 HIS C 60 1 O THR C 57 N GLU C 24 SHEET 1 D 5 TYR D 9 THR D 11 0 SHEET 2 D 5 TYR D 158 LEU D 160 -1 O GLN D 159 N ILE D 10 SHEET 3 D 5 ALA D 151 VAL D 154 -1 N VAL D 154 O TYR D 158 SHEET 4 D 5 VAL D 22 PHE D 26 -1 N PHE D 25 O ALA D 151 SHEET 5 D 5 MET D 56 HIS D 60 1 O TYR D 59 N GLU D 24 SHEET 1 E 5 TYR E 9 THR E 11 0 SHEET 2 E 5 TYR E 158 LEU E 160 -1 O GLN E 159 N ILE E 10 SHEET 3 E 5 ALA E 151 VAL E 154 -1 N MET E 152 O LEU E 160 SHEET 4 E 5 VAL E 22 PHE E 26 -1 N LEU E 23 O TYR E 153 SHEET 5 E 5 MET E 56 HIS E 60 1 O TYR E 59 N GLU E 24 SHEET 1 F 2 TYR F 9 THR F 11 0 SHEET 2 F 2 TYR F 158 LEU F 160 -1 O GLN F 159 N ILE F 10 SHEET 1 G 3 MET F 56 HIS F 60 0 SHEET 2 G 3 VAL F 22 PHE F 26 1 N GLU F 24 O TYR F 59 SHEET 3 G 3 ALA F 151 VAL F 154 -1 O TYR F 153 N LEU F 23 CISPEP 1 VAL A 149 PRO A 150 0 -1.77 CISPEP 2 VAL B 149 PRO B 150 0 -2.90 CISPEP 3 VAL C 149 PRO C 150 0 -3.32 CISPEP 4 VAL D 149 PRO D 150 0 -0.61 CISPEP 5 VAL E 149 PRO E 150 0 -2.55 CISPEP 6 VAL F 149 PRO F 150 0 0.82 CRYST1 91.540 91.540 147.211 90.00 90.00 120.00 P 32 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010924 0.006307 0.000000 0.00000 SCALE2 0.000000 0.012614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006793 0.00000