HEADER IMMUNE SYSTEM 22-AUG-13 4MCZ TITLE IMMUNE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 26-206; COMPND 5 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-4 BETA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 30-219; COMPND 11 SYNONYM: MHC CLASS II ANTIGEN DRB1*4, DR-4, DR4; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CITRULLINATED VIMENTIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RESIDUES 59-71; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 OTHER_DETAILS: THIS SEQUENCE IS FROM HUMAN VIMENTIN AND CONTAINS SOURCE 20 CITRULLINE AT POSITION 64 KEYWDS HLA-DR, ANTIGEN PRESENTATION, T-CELL RECEPTOR, CITRULLINATION, KEYWDS 2 MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,J.ROSSJOHN REVDAT 5 27-NOV-24 4MCZ 1 REMARK REVDAT 4 15-NOV-23 4MCZ 1 HETSYN LINK ATOM REVDAT 3 29-JUL-20 4MCZ 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 11-DEC-13 4MCZ 1 JRNL REVDAT 1 04-DEC-13 4MCZ 0 JRNL AUTH S.W.SCALLY,J.PETERSEN,S.C.LAW,N.L.DUDEK,H.J.NEL,K.L.LOH, JRNL AUTH 2 L.C.WIJEYEWICKREMA,S.B.ECKLE,J.VAN HEEMST,R.N.PIKE, JRNL AUTH 3 J.MCCLUSKEY,R.E.TOES,N.L.LA GRUTA,A.W.PURCELL,H.H.REID, JRNL AUTH 4 R.THOMAS,J.ROSSJOHN JRNL TITL A MOLECULAR BASIS FOR THE ASSOCIATION OF THE HLA-DRB1 LOCUS, JRNL TITL 2 CITRULLINATION, AND RHEUMATOID ARTHRITIS. JRNL REF J.EXP.MED. V. 210 2569 2013 JRNL REFN ISSN 0022-1007 JRNL PMID 24190431 JRNL DOI 10.1084/JEM.20131241 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8515 - 4.6091 0.99 2684 129 0.1839 0.2445 REMARK 3 2 4.6091 - 3.6588 1.00 2570 136 0.1573 0.1845 REMARK 3 3 3.6588 - 3.1964 1.00 2529 148 0.1783 0.2108 REMARK 3 4 3.1964 - 2.9042 1.00 2546 131 0.2057 0.2644 REMARK 3 5 2.9042 - 2.6960 1.00 2515 145 0.2146 0.2728 REMARK 3 6 2.6960 - 2.5371 1.00 2504 157 0.2199 0.2441 REMARK 3 7 2.5371 - 2.4100 1.00 2524 123 0.2128 0.2466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3285 REMARK 3 ANGLE : 1.020 4466 REMARK 3 CHIRALITY : 0.065 479 REMARK 3 PLANARITY : 0.004 581 REMARK 3 DIHEDRAL : 14.338 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3202 24.3940 -0.0499 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.1514 REMARK 3 T33: 0.1041 T12: -0.0082 REMARK 3 T13: -0.0109 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.2239 L22: 2.9698 REMARK 3 L33: 0.9318 L12: 0.0512 REMARK 3 L13: -0.8730 L23: -0.8830 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.2880 S13: -0.1886 REMARK 3 S21: 0.3934 S22: -0.0381 S23: -0.0479 REMARK 3 S31: -0.0278 S32: -0.0111 S33: 0.0604 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4934 12.3855 6.7608 REMARK 3 T TENSOR REMARK 3 T11: 0.3810 T22: 0.2993 REMARK 3 T33: 0.3688 T12: 0.0992 REMARK 3 T13: 0.0443 T23: 0.1548 REMARK 3 L TENSOR REMARK 3 L11: 1.6971 L22: 2.8282 REMARK 3 L33: 3.2858 L12: -0.9052 REMARK 3 L13: 0.3399 L23: -0.9727 REMARK 3 S TENSOR REMARK 3 S11: -0.2111 S12: -0.6998 S13: -0.7858 REMARK 3 S21: 0.7885 S22: 0.2001 S23: 0.1763 REMARK 3 S31: 0.4757 S32: -0.0861 S33: -0.1583 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6271 35.8123 -4.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.2187 REMARK 3 T33: 0.1020 T12: -0.0364 REMARK 3 T13: -0.0186 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.5637 L22: 5.4319 REMARK 3 L33: 4.4860 L12: -0.4527 REMARK 3 L13: 0.2539 L23: -3.3921 REMARK 3 S TENSOR REMARK 3 S11: 0.2368 S12: -0.1886 S13: 0.0540 REMARK 3 S21: 0.3580 S22: -0.0876 S23: -0.0367 REMARK 3 S31: -0.3447 S32: 0.4355 S33: 0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9444 44.2823 -10.1702 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.0644 REMARK 3 T33: 0.1050 T12: -0.0080 REMARK 3 T13: -0.0289 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.0387 L22: 0.7372 REMARK 3 L33: 0.4873 L12: 0.5433 REMARK 3 L13: 0.0903 L23: 0.3883 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.0896 S13: 0.2733 REMARK 3 S21: 0.0774 S22: 0.1385 S23: -0.0696 REMARK 3 S31: -0.2847 S32: 0.0585 S33: -0.0892 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3727 21.4268 5.6496 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.1883 REMARK 3 T33: 0.2301 T12: -0.0022 REMARK 3 T13: 0.3288 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.2338 L22: 3.2439 REMARK 3 L33: 1.7560 L12: 0.4383 REMARK 3 L13: 0.1492 L23: -0.3645 REMARK 3 S TENSOR REMARK 3 S11: -0.2671 S12: -0.3119 S13: -0.5421 REMARK 3 S21: 0.1875 S22: -0.2120 S23: 0.3671 REMARK 3 S31: 0.3719 S32: -0.3427 S33: 0.1316 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0338 31.8463 6.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.3111 T22: 0.2252 REMARK 3 T33: 0.1053 T12: 0.0584 REMARK 3 T13: 0.0930 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.0393 L22: 0.5374 REMARK 3 L33: 0.1571 L12: 0.0694 REMARK 3 L13: -0.3838 L23: 0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.2019 S12: -0.2317 S13: -0.0773 REMARK 3 S21: 0.3607 S22: 0.0965 S23: 0.0368 REMARK 3 S31: -0.1497 S32: 0.0025 S33: 0.0111 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0351 27.6829 -1.2439 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1471 REMARK 3 T33: 0.1009 T12: 0.0094 REMARK 3 T13: -0.0184 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.7849 L22: 0.8039 REMARK 3 L33: 1.6635 L12: 0.3254 REMARK 3 L13: -1.0622 L23: -1.0910 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: -0.0821 S13: -0.0772 REMARK 3 S21: 0.1376 S22: 0.0723 S23: -0.0633 REMARK 3 S31: 0.3846 S32: 0.0092 S33: 0.0125 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3800 31.4277 9.9108 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.2733 REMARK 3 T33: 0.2781 T12: 0.0523 REMARK 3 T13: 0.2072 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.1484 L22: 1.3544 REMARK 3 L33: 1.6828 L12: -0.1004 REMARK 3 L13: -0.3207 L23: -0.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.1486 S12: -0.2779 S13: 0.2626 REMARK 3 S21: 0.5284 S22: 0.0404 S23: 0.7104 REMARK 3 S31: -0.3520 S32: 0.0797 S33: -0.2306 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7654 36.7093 1.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.1204 REMARK 3 T33: 0.2726 T12: 0.0556 REMARK 3 T13: 0.0143 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.8328 L22: 3.9208 REMARK 3 L33: 3.2241 L12: -0.2614 REMARK 3 L13: -1.1534 L23: -2.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.3379 S12: 0.4032 S13: 0.8280 REMARK 3 S21: 0.2912 S22: 0.4750 S23: 0.9760 REMARK 3 S31: -0.2463 S32: -0.4626 S33: -0.3263 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5019 24.8223 -13.7143 REMARK 3 T TENSOR REMARK 3 T11: 0.0936 T22: 0.1067 REMARK 3 T33: 0.1013 T12: 0.0136 REMARK 3 T13: -0.0088 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.1532 L22: 1.9778 REMARK 3 L33: 1.2250 L12: -0.2211 REMARK 3 L13: -0.5632 L23: 0.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.0167 S13: -0.1919 REMARK 3 S21: -0.0772 S22: 0.0589 S23: -0.1729 REMARK 3 S31: -0.0224 S32: 0.0556 S33: 0.0331 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7410 10.8999 -6.9124 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.1520 REMARK 3 T33: 0.3010 T12: 0.0302 REMARK 3 T13: 0.0601 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 2.9458 L22: 1.2868 REMARK 3 L33: 1.0562 L12: 0.0645 REMARK 3 L13: 1.0523 L23: -0.1725 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: -0.2827 S13: -0.5785 REMARK 3 S21: -0.0869 S22: 0.1238 S23: 0.1903 REMARK 3 S31: 0.0299 S32: -0.2505 S33: -0.0569 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7202 26.0256 -6.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.1468 REMARK 3 T33: 0.2366 T12: -0.0255 REMARK 3 T13: 0.0456 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.5126 L22: 1.8358 REMARK 3 L33: 4.1631 L12: 2.8323 REMARK 3 L13: -1.5515 L23: -1.4038 REMARK 3 S TENSOR REMARK 3 S11: 0.4570 S12: -0.2109 S13: 0.4240 REMARK 3 S21: -0.0136 S22: 0.0634 S23: 0.2152 REMARK 3 S31: -0.7199 S32: 0.4265 S33: -0.1434 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 48.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 0.1M BIS-TRIS-PROPANE, PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.64000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.71500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.64000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.71500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 182 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 ASP A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 THR B 191 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 ASP B 196 REMARK 465 ASP B 197 REMARK 465 LYS B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 109 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CIR C 6 CA - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 CIR C 6 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 29.02 47.73 REMARK 500 HIS B 33 -114.45 59.69 REMARK 500 THR B 90 -72.33 -124.17 REMARK 500 ASN B 113 18.56 -140.48 REMARK 500 PRO B 124 -168.19 -79.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCY RELATED DB: PDB REMARK 900 RELATED ID: 4MD0 RELATED DB: PDB REMARK 900 RELATED ID: 4MD4 RELATED DB: PDB REMARK 900 RELATED ID: 4MD5 RELATED DB: PDB REMARK 900 RELATED ID: 4MDI RELATED DB: PDB REMARK 900 RELATED ID: 4MDJ RELATED DB: PDB DBREF 4MCZ A 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 4MCZ B 1 190 UNP P13760 2B14_HUMAN 30 219 DBREF 4MCZ C 1 13 UNP P08670 VIME_HUMAN 59 71 SEQADV 4MCZ THR A 182 UNP P01903 EXPRESSION TAG SEQADV 4MCZ SER A 183 UNP P01903 EXPRESSION TAG SEQADV 4MCZ GLY A 184 UNP P01903 EXPRESSION TAG SEQADV 4MCZ ASP A 185 UNP P01903 EXPRESSION TAG SEQADV 4MCZ ASP A 186 UNP P01903 EXPRESSION TAG SEQADV 4MCZ ASP A 187 UNP P01903 EXPRESSION TAG SEQADV 4MCZ ASP A 188 UNP P01903 EXPRESSION TAG SEQADV 4MCZ LYS A 189 UNP P01903 EXPRESSION TAG SEQADV 4MCZ GLY B -1 UNP P13760 EXPRESSION TAG SEQADV 4MCZ SER B 0 UNP P13760 EXPRESSION TAG SEQADV 4MCZ THR B 191 UNP P13760 EXPRESSION TAG SEQADV 4MCZ GLY B 192 UNP P13760 EXPRESSION TAG SEQADV 4MCZ GLY B 193 UNP P13760 EXPRESSION TAG SEQADV 4MCZ ASP B 194 UNP P13760 EXPRESSION TAG SEQADV 4MCZ ASP B 195 UNP P13760 EXPRESSION TAG SEQADV 4MCZ ASP B 196 UNP P13760 EXPRESSION TAG SEQADV 4MCZ ASP B 197 UNP P13760 EXPRESSION TAG SEQADV 4MCZ LYS B 198 UNP P13760 EXPRESSION TAG SEQRES 1 A 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 A 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 B 200 GLY SER GLY ASP THR ARG PRO ARG PHE LEU GLU GLN VAL SEQRES 2 B 200 LYS HIS GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL SEQRES 3 B 200 ARG PHE LEU ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR SEQRES 4 B 200 VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL SEQRES 5 B 200 THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER SEQRES 6 B 200 GLN LYS ASP LEU LEU GLU GLN LYS ARG ALA ALA VAL ASP SEQRES 7 B 200 THR TYR CYS ARG HIS ASN TYR GLY VAL GLY GLU SER PHE SEQRES 8 B 200 THR VAL GLN ARG ARG VAL TYR PRO GLU VAL THR VAL TYR SEQRES 9 B 200 PRO ALA LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU SEQRES 10 B 200 VAL CYS SER VAL ASN GLY PHE TYR PRO GLY SER ILE GLU SEQRES 11 B 200 VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS THR GLY SEQRES 12 B 200 VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR SEQRES 13 B 200 PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO ARG SER SEQRES 14 B 200 GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU SEQRES 15 B 200 THR SER PRO LEU THR VAL GLU TRP ARG ALA THR GLY GLY SEQRES 16 B 200 ASP ASP ASP ASP LYS SEQRES 1 C 13 GLY VAL TYR ALA THR CIR SER SER ALA VAL ARG LEU ARG MODRES 4MCZ ASN B 19 ASN GLYCOSYLATION SITE MODRES 4MCZ ASN A 78 ASN GLYCOSYLATION SITE MODRES 4MCZ ASN A 118 ASN GLYCOSYLATION SITE MODRES 4MCZ CIR C 6 ARG CITRULLINE HET CIR C 6 11 HET NAG A 500 14 HET NAG A 501 14 HET NAG B 500 14 HETNAM CIR CITRULLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CIR C6 H13 N3 O3 FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 7 HOH *239(H2 O) HELIX 1 1 GLU A 47 ALA A 52 1 6 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 SER B 63 1 10 HELIX 5 5 GLN B 64 ALA B 73 1 10 HELIX 6 6 ALA B 73 TYR B 78 1 6 HELIX 7 7 TYR B 78 GLU B 87 1 10 HELIX 8 8 SER B 88 THR B 90 5 3 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O PHE B 17 N HIS A 5 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O PHE B 31 N GLN B 10 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 TYR A 161 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 GLU B 98 ALA B 104 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O LEU B 114 N ALA B 104 SHEET 3 E 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 GLU B 98 ALA B 104 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O LEU B 114 N ALA B 104 SHEET 3 F 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O LEU B 184 N VAL B 175 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.03 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 LINK ND2 ASN A 78 C1 NAG A 500 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN B 19 C1 NAG B 500 1555 1555 1.44 LINK C THR C 5 N CIR C 6 1555 1555 1.35 LINK C CIR C 6 N SER C 7 1555 1555 1.32 CISPEP 1 ASN A 15 PRO A 16 0 2.99 CISPEP 2 THR A 113 PRO A 114 0 0.55 CISPEP 3 TYR B 123 PRO B 124 0 1.18 CRYST1 67.110 183.430 77.280 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012940 0.00000