HEADER IMMUNE SYSTEM 22-AUG-13 4MD5 TITLE IMMUNE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 26-206; COMPND 5 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-4 BETA CHAIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN, UNP RESIDUES 30-219; COMPND 11 SYNONYM: MHC CLASS II ANTIGEN DRB1*4, DR-4, DR4; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CITRULLINATED VIMENTIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RESIDUES 66-78; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HLA-DRB1; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 OTHER_DETAILS: THIS SEQUENCE IS FROM HUMAN VIMENTIN AND CONTAINS SOURCE 20 CITRULLINE AT POSITION 71 KEYWDS HLA-DR, ANTIGEN PRESENTATION, T-CELL RECEPTOR, CITRULLINATION, KEYWDS 2 MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,J.ROSSJOHN REVDAT 6 16-OCT-24 4MD5 1 REMARK REVDAT 5 27-DEC-23 4MD5 1 LINK REVDAT 4 15-NOV-23 4MD5 1 HETSYN LINK ATOM REVDAT 3 29-JUL-20 4MD5 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-DEC-13 4MD5 1 JRNL REVDAT 1 04-DEC-13 4MD5 0 JRNL AUTH S.W.SCALLY,J.PETERSEN,S.C.LAW,N.L.DUDEK,H.J.NEL,K.L.LOH, JRNL AUTH 2 L.C.WIJEYEWICKREMA,S.B.ECKLE,J.VAN HEEMST,R.N.PIKE, JRNL AUTH 3 J.MCCLUSKEY,R.E.TOES,N.L.LA GRUTA,A.W.PURCELL,H.H.REID, JRNL AUTH 4 R.THOMAS,J.ROSSJOHN JRNL TITL A MOLECULAR BASIS FOR THE ASSOCIATION OF THE HLA-DRB1 LOCUS, JRNL TITL 2 CITRULLINATION, AND RHEUMATOID ARTHRITIS. JRNL REF J.EXP.MED. V. 210 2569 2013 JRNL REFN ISSN 0022-1007 JRNL PMID 24190431 JRNL DOI 10.1084/JEM.20131241 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1721 - 4.5481 0.99 2789 151 0.1649 0.1675 REMARK 3 2 4.5481 - 3.6116 1.00 2676 147 0.1432 0.1506 REMARK 3 3 3.6116 - 3.1555 1.00 2661 140 0.1568 0.1707 REMARK 3 4 3.1555 - 2.8672 1.00 2626 151 0.1718 0.2275 REMARK 3 5 2.8672 - 2.6618 1.00 2635 151 0.1753 0.1923 REMARK 3 6 2.6618 - 2.5049 1.00 2621 140 0.1684 0.1906 REMARK 3 7 2.5049 - 2.3795 1.00 2630 130 0.1657 0.2039 REMARK 3 8 2.3795 - 2.2759 1.00 2624 130 0.1668 0.1668 REMARK 3 9 2.2759 - 2.1884 1.00 2634 136 0.1547 0.1821 REMARK 3 10 2.1884 - 2.1129 1.00 2604 126 0.1568 0.1867 REMARK 3 11 2.1129 - 2.0468 1.00 2616 136 0.1556 0.1771 REMARK 3 12 2.0468 - 1.9883 1.00 2604 118 0.1516 0.2021 REMARK 3 13 1.9883 - 1.9360 1.00 2619 138 0.1544 0.1619 REMARK 3 14 1.9360 - 1.8887 1.00 2594 141 0.1642 0.2300 REMARK 3 15 1.8887 - 1.8458 1.00 2591 138 0.1699 0.2332 REMARK 3 16 1.8458 - 1.8065 1.00 2593 139 0.1701 0.1884 REMARK 3 17 1.8065 - 1.7704 1.00 2590 142 0.1732 0.1950 REMARK 3 18 1.7704 - 1.7370 1.00 2613 142 0.1806 0.2289 REMARK 3 19 1.7370 - 1.7060 1.00 2593 117 0.1813 0.2332 REMARK 3 20 1.7060 - 1.6771 1.00 2579 156 0.1893 0.2096 REMARK 3 21 1.6771 - 1.6500 1.00 2573 139 0.1936 0.2114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3512 REMARK 3 ANGLE : 1.022 4790 REMARK 3 CHIRALITY : 0.073 517 REMARK 3 PLANARITY : 0.005 627 REMARK 3 DIHEDRAL : 16.274 1323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7017 26.3749 -4.1731 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1126 REMARK 3 T33: 0.0360 T12: 0.0127 REMARK 3 T13: -0.0120 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.1335 L22: 4.8211 REMARK 3 L33: 0.8722 L12: -0.1817 REMARK 3 L13: -0.8565 L23: -0.1666 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.2048 S13: -0.1329 REMARK 3 S21: 0.2492 S22: 0.0765 S23: 0.0350 REMARK 3 S31: 0.0203 S32: 0.0303 S33: 0.0527 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1092 18.2772 6.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.2452 REMARK 3 T33: 0.1422 T12: 0.0272 REMARK 3 T13: -0.0027 T23: 0.0943 REMARK 3 L TENSOR REMARK 3 L11: 2.4589 L22: 2.3202 REMARK 3 L33: 3.5281 L12: -0.2859 REMARK 3 L13: -0.0506 L23: -0.8594 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.7324 S13: -0.4659 REMARK 3 S21: 0.5022 S22: 0.0222 S23: -0.1779 REMARK 3 S31: 0.0711 S32: 0.0355 S33: 0.0152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7914 36.2469 -4.3418 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.1269 REMARK 3 T33: 0.1267 T12: -0.0151 REMARK 3 T13: -0.0260 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 2.7534 L22: 4.8120 REMARK 3 L33: 3.3969 L12: 0.0781 REMARK 3 L13: 0.3546 L23: -1.6784 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.2077 S13: 0.1329 REMARK 3 S21: 0.4023 S22: -0.0064 S23: -0.4131 REMARK 3 S31: -0.2832 S32: 0.2450 S33: 0.0518 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8625 29.6415 -0.6676 REMARK 3 T TENSOR REMARK 3 T11: 0.1494 T22: 0.0981 REMARK 3 T33: 0.0835 T12: 0.0228 REMARK 3 T13: 0.0370 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.8799 L22: 2.7435 REMARK 3 L33: 1.7146 L12: 2.0502 REMARK 3 L13: -1.7592 L23: -0.9031 REMARK 3 S TENSOR REMARK 3 S11: -0.1779 S12: 0.0476 S13: -0.1320 REMARK 3 S21: 0.1733 S22: 0.1176 S23: 0.1917 REMARK 3 S31: 0.0957 S32: -0.2220 S33: 0.0330 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6256 32.0997 3.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.1401 REMARK 3 T33: 0.0733 T12: 0.0322 REMARK 3 T13: 0.0282 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.1397 L22: 0.5105 REMARK 3 L33: 1.4548 L12: -0.0798 REMARK 3 L13: -1.3996 L23: -0.3030 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: -0.3285 S13: -0.0342 REMARK 3 S21: 0.3035 S22: 0.0472 S23: 0.0840 REMARK 3 S31: -0.0204 S32: 0.2325 S33: 0.0768 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4549 32.3827 4.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.1217 REMARK 3 T33: 0.1291 T12: 0.0274 REMARK 3 T13: 0.0585 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.4929 L22: 2.3569 REMARK 3 L33: 2.6998 L12: 0.5733 REMARK 3 L13: -1.7609 L23: -0.6868 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.1254 S13: 0.2124 REMARK 3 S21: 0.2958 S22: 0.0903 S23: 0.5248 REMARK 3 S31: -0.0296 S32: -0.1200 S33: -0.1120 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8267 24.6646 -13.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.0754 REMARK 3 T33: 0.0889 T12: 0.0006 REMARK 3 T13: -0.0021 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.8008 L22: 1.7259 REMARK 3 L33: 1.1205 L12: -0.0650 REMARK 3 L13: -0.5173 L23: -0.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0792 S12: -0.0046 S13: -0.2111 REMARK 3 S21: -0.1046 S22: 0.0109 S23: -0.1132 REMARK 3 S31: 0.0416 S32: 0.0758 S33: 0.0516 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8774 10.9141 -6.7206 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.1468 REMARK 3 T33: 0.2891 T12: 0.0107 REMARK 3 T13: 0.0630 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 2.5631 L22: 1.6117 REMARK 3 L33: 1.3814 L12: -0.0714 REMARK 3 L13: 1.2597 L23: -0.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.2221 S13: -0.5053 REMARK 3 S21: -0.0277 S22: 0.1711 S23: 0.3194 REMARK 3 S31: -0.0647 S32: -0.2357 S33: -0.0899 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2879 25.3681 -5.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.1531 REMARK 3 T33: 0.1306 T12: 0.0184 REMARK 3 T13: -0.0244 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.6908 L22: 4.0539 REMARK 3 L33: 5.0325 L12: 1.8473 REMARK 3 L13: -1.6560 L23: -4.4961 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: -0.3030 S13: -0.1988 REMARK 3 S21: 0.4134 S22: -0.2499 S23: -0.3274 REMARK 3 S31: -0.1357 S32: 0.3470 S33: 0.1577 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58009 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 0.2M POTASSIUM NITRATE, REMARK 280 0.1M BIS-TRIS-PROPANE PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.75800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.75800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.50050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.50050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.75800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.50050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.75800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.50050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 447 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 490 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 LYS A 2 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 ASP A 185 REMARK 465 ASP A 186 REMARK 465 ASP A 187 REMARK 465 ASP A 188 REMARK 465 LYS A 189 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 192 REMARK 465 GLY B 193 REMARK 465 ASP B 194 REMARK 465 ASP B 195 REMARK 465 ASP B 196 REMARK 465 ASP B 197 REMARK 465 LYS B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 27.54 48.37 REMARK 500 HIS B 33 -115.57 59.80 REMARK 500 THR B 90 -72.29 -124.63 REMARK 500 ASN B 113 18.98 -140.77 REMARK 500 PRO B 124 -168.08 -79.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MCY RELATED DB: PDB REMARK 900 RELATED ID: 4MCZ RELATED DB: PDB REMARK 900 RELATED ID: 4MD0 RELATED DB: PDB REMARK 900 RELATED ID: 4MD4 RELATED DB: PDB REMARK 900 RELATED ID: 4MDI RELATED DB: PDB REMARK 900 RELATED ID: 4MDJ RELATED DB: PDB DBREF 4MD5 A 1 181 UNP P01903 DRA_HUMAN 26 206 DBREF 4MD5 B 1 190 UNP P13760 2B14_HUMAN 30 219 DBREF 4MD5 C 1 13 UNP P08670 VIME_HUMAN 66 78 SEQADV 4MD5 THR A 182 UNP P01903 EXPRESSION TAG SEQADV 4MD5 SER A 183 UNP P01903 EXPRESSION TAG SEQADV 4MD5 GLY A 184 UNP P01903 EXPRESSION TAG SEQADV 4MD5 ASP A 185 UNP P01903 EXPRESSION TAG SEQADV 4MD5 ASP A 186 UNP P01903 EXPRESSION TAG SEQADV 4MD5 ASP A 187 UNP P01903 EXPRESSION TAG SEQADV 4MD5 ASP A 188 UNP P01903 EXPRESSION TAG SEQADV 4MD5 LYS A 189 UNP P01903 EXPRESSION TAG SEQADV 4MD5 GLY B -1 UNP P13760 EXPRESSION TAG SEQADV 4MD5 SER B 0 UNP P13760 EXPRESSION TAG SEQADV 4MD5 ARG B 71 UNP P13760 LYS 100 VARIANT SEQADV 4MD5 VAL B 86 UNP P13760 GLY 115 VARIANT SEQADV 4MD5 THR B 191 UNP P13760 EXPRESSION TAG SEQADV 4MD5 GLY B 192 UNP P13760 EXPRESSION TAG SEQADV 4MD5 GLY B 193 UNP P13760 EXPRESSION TAG SEQADV 4MD5 ASP B 194 UNP P13760 EXPRESSION TAG SEQADV 4MD5 ASP B 195 UNP P13760 EXPRESSION TAG SEQADV 4MD5 ASP B 196 UNP P13760 EXPRESSION TAG SEQADV 4MD5 ASP B 197 UNP P13760 EXPRESSION TAG SEQADV 4MD5 LYS B 198 UNP P13760 EXPRESSION TAG SEQRES 1 A 189 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 189 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 189 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 189 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 189 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 189 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 189 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 189 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 189 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 189 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 189 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 189 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 189 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 189 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP THR SEQRES 15 A 189 SER GLY ASP ASP ASP ASP LYS SEQRES 1 B 200 GLY SER GLY ASP THR ARG PRO ARG PHE LEU GLU GLN VAL SEQRES 2 B 200 LYS HIS GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL SEQRES 3 B 200 ARG PHE LEU ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR SEQRES 4 B 200 VAL ARG PHE ASP SER ASP VAL GLY GLU TYR ARG ALA VAL SEQRES 5 B 200 THR GLU LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER SEQRES 6 B 200 GLN LYS ASP LEU LEU GLU GLN ARG ARG ALA ALA VAL ASP SEQRES 7 B 200 THR TYR CYS ARG HIS ASN TYR GLY VAL VAL GLU SER PHE SEQRES 8 B 200 THR VAL GLN ARG ARG VAL TYR PRO GLU VAL THR VAL TYR SEQRES 9 B 200 PRO ALA LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU SEQRES 10 B 200 VAL CYS SER VAL ASN GLY PHE TYR PRO GLY SER ILE GLU SEQRES 11 B 200 VAL ARG TRP PHE ARG ASN GLY GLN GLU GLU LYS THR GLY SEQRES 12 B 200 VAL VAL SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR SEQRES 13 B 200 PHE GLN THR LEU VAL MET LEU GLU THR VAL PRO ARG SER SEQRES 14 B 200 GLY GLU VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU SEQRES 15 B 200 THR SER PRO LEU THR VAL GLU TRP ARG ALA THR GLY GLY SEQRES 16 B 200 ASP ASP ASP ASP LYS SEQRES 1 C 13 SER ALA VAL ARG LEU CIR SER SER VAL PRO GLY VAL ARG MODRES 4MD5 ASN A 118 ASN GLYCOSYLATION SITE MODRES 4MD5 ASN B 19 ASN GLYCOSYLATION SITE MODRES 4MD5 ASN A 78 ASN GLYCOSYLATION SITE MODRES 4MD5 CIR C 6 ARG CITRULLINE HET CIR C 6 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG A 201 14 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET NAG B 201 14 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET PGE B 205 10 HETNAM CIR CITRULLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CIR C6 H13 N3 O3 FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 6 EDO 8(C2 H6 O2) FORMUL 15 PGE C6 H14 O4 FORMUL 16 HOH *466(H2 O) HELIX 1 1 LEU A 45 PHE A 51 5 7 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 THR B 51 LEU B 53 5 3 HELIX 4 4 GLY B 54 SER B 63 1 10 HELIX 5 5 GLN B 64 TYR B 78 1 15 HELIX 6 6 TYR B 78 GLU B 87 1 10 HELIX 7 7 SER B 88 THR B 90 5 3 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 N HIS A 33 O VAL A 42 SHEET 3 A 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 8 PHE B 7 PHE B 18 -1 O PHE B 17 N HIS A 5 SHEET 6 A 8 ARG B 23 TYR B 32 -1 O LEU B 27 N GLU B 14 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O PHE B 40 N ASP B 28 SHEET 8 A 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 B 4 GLU A 88 THR A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 B 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 C 4 GLU A 88 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O LEU A 151 N LEU A 105 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 LYS A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 D 4 VAL A 160 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 D 4 LEU A 174 GLU A 179 -1 O TRP A 178 N TYR A 161 SHEET 1 E 4 GLU B 98 ALA B 104 0 SHEET 2 E 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 E 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 E 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 F 4 GLU B 98 ALA B 104 0 SHEET 2 F 4 LEU B 114 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 F 4 PHE B 155 GLU B 162 -1 O THR B 157 N VAL B 119 SHEET 4 F 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 G 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 ARG B 189 -1 O TRP B 188 N TYR B 171 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.09 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 LINK ND2 ASN A 78 C1 NAG A 201 1555 1555 1.44 LINK ND2 ASN A 118 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 19 C1 NAG B 201 1555 1555 1.44 LINK C LEU C 5 N CIR C 6 1555 1555 1.31 LINK C CIR C 6 N SER C 7 1555 1555 1.32 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 ASN A 15 PRO A 16 0 3.38 CISPEP 2 THR A 113 PRO A 114 0 0.61 CISPEP 3 TYR B 123 PRO B 124 0 1.88 CISPEP 4 ALA B 190 THR B 191 0 3.72 CRYST1 67.420 183.001 77.516 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012901 0.00000