HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-13 4MDA TITLE STRUCTURE OF MOS1 TRANSPOSASE CATALYTIC DOMAIN AND RALTEGRAVIR WITH MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARINER MOS1 TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 211-345); COMPND 5 SYNONYM: MOS1 DNA TRANSPOSASE, TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MAURITIANA; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7226; SOURCE 5 GENE: MARINER\T; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNASE-H FOLD, DDD MOTIF, RECOMBINASE, DNA TRANSPOSITION, DNA KEYWDS 2 INTEGRATION, TRANSPOSON DNA, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RICHARDSON REVDAT 5 20-SEP-23 4MDA 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK REVDAT 4 07-MAY-14 4MDA 1 REMARK REVDAT 3 02-APR-14 4MDA 1 JRNL REVDAT 2 05-FEB-14 4MDA 1 JRNL REVDAT 1 22-JAN-14 4MDA 0 JRNL AUTH U.M.WOLKOWICZ,E.R.MORRIS,M.ROBSON,M.TRUBITSYNA, JRNL AUTH 2 J.M.RICHARDSON JRNL TITL STRUCTURAL BASIS OF MOS1 TRANSPOSASE INHIBITION BY THE JRNL TITL 2 ANTI-RETROVIRAL DRUG RALTEGRAVIR. JRNL REF ACS CHEM.BIOL. V. 9 743 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24397848 JRNL DOI 10.1021/CB400791U REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1641 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1834 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1704 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2487 ; 2.052 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3904 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 6.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.966 ;22.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;14.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.259 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2080 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 817 ; 1.876 ; 1.672 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 816 ; 1.875 ; 1.669 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 2.970 ; 2.491 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2F7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG4000, 100 MM TRIS, PH 6.8, REMARK 280 5 MM MANGANESE CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.61500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.29000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.30750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.29000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.92250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.30750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.92250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.61500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 164 REMARK 465 PRO A 165 REMARK 465 LYS A 166 REMARK 465 ARG A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 SER A 170 REMARK 465 TYR A 171 REMARK 465 VAL A 172 REMARK 465 ASP A 173 REMARK 465 PRO A 174 REMARK 465 GLY A 175 REMARK 465 GLN A 176 REMARK 465 PRO A 177 REMARK 465 ALA A 178 REMARK 465 THR A 179 REMARK 465 SER A 180 REMARK 465 THR A 181 REMARK 465 ALA A 182 REMARK 465 ARG A 183 REMARK 465 PRO A 184 REMARK 465 ASN A 185 REMARK 465 ARG A 186 REMARK 465 PHE A 187 REMARK 465 GLY A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 311 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 332 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 250 42.76 -102.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD1 REMARK 620 2 ASP A 249 OD2 81.1 REMARK 620 3 RLT A 403 OAH 102.8 97.8 REMARK 620 4 RLT A 403 OAE 168.8 89.4 84.2 REMARK 620 5 HOH A 552 O 93.1 172.9 87.3 96.0 REMARK 620 6 HOH A 555 O 90.2 87.7 166.5 83.5 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 284 OD1 97.2 REMARK 620 3 ASP A 284 OD2 90.2 57.2 REMARK 620 4 RLT A 403 OAH 96.3 154.2 100.8 REMARK 620 5 RLT A 403 OAG 171.6 86.6 85.6 77.5 REMARK 620 6 HOH A 536 O 91.1 95.8 152.9 105.9 96.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RLT A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MDB RELATED DB: PDB REMARK 900 CO-CRYSTAL STRUCTURE OF MOS1 TRANSPOSASE AND RALTEGRAVIR WITH MG REMARK 900 RELATED ID: 2F7T RELATED DB: PDB REMARK 900 MOS1 CATALYTIC DOMAIN STRUCTURE REMARK 900 RELATED ID: 3HOS RELATED DB: PDB REMARK 900 MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MG REMARK 900 RELATED ID: 3HOT RELATED DB: PDB REMARK 900 MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MN DBREF 4MDA A 121 345 UNP Q7JQ07 MOS1T_DROMA 121 345 SEQADV 4MDA ASN A 164 UNP Q7JQ07 SER 164 CONFLICT SEQADV 4MDA PRO A 210 UNP Q7JQ07 ARG 210 CONFLICT SEQADV 4MDA ALA A 216 UNP Q7JQ07 THR 216 ENGINEERED MUTATION SEQADV 4MDA PHE A 344 UNP Q7JQ07 LEU 344 CONFLICT SEQRES 1 A 225 PRO HIS GLU LEU ASN GLU ARG GLN MET GLU ARG ARG LYS SEQRES 2 A 225 ASN THR CYS GLU ILE LEU LEU SER ARG TYR LYS ARG LYS SEQRES 3 A 225 SER PHE LEU HIS ARG ILE VAL THR GLY ASP GLU LYS TRP SEQRES 4 A 225 ILE PHE PHE VAL ASN PRO LYS ARG LYS LYS SER TYR VAL SEQRES 5 A 225 ASP PRO GLY GLN PRO ALA THR SER THR ALA ARG PRO ASN SEQRES 6 A 225 ARG PHE GLY LYS LYS THR MET LEU CYS VAL TRP TRP ASP SEQRES 7 A 225 GLN SER GLY VAL ILE TYR TYR GLU LEU LEU LYS PRO GLY SEQRES 8 A 225 GLU THR VAL ASN ALA ALA ARG TYR GLN GLN GLN LEU ILE SEQRES 9 A 225 ASN LEU ASN ARG ALA LEU GLN ARG LYS ARG PRO GLU TYR SEQRES 10 A 225 GLN LYS ARG GLN HIS ARG VAL ILE PHE LEU HIS ASP ASN SEQRES 11 A 225 ALA PRO SER HIS THR ALA ARG ALA VAL ARG ASP THR LEU SEQRES 12 A 225 GLU THR LEU ASN TRP GLU VAL LEU PRO HIS ALA ALA TYR SEQRES 13 A 225 SER PRO ASP LEU ALA PRO SER ASP TYR HIS LEU PHE ALA SEQRES 14 A 225 SER MET GLY HIS ALA LEU ALA GLU GLN ARG PHE ASP SER SEQRES 15 A 225 TYR GLU SER VAL LYS LYS TRP LEU ASP GLU TRP PHE ALA SEQRES 16 A 225 ALA LYS ASP ASP GLU PHE TYR TRP ARG GLY ILE HIS LYS SEQRES 17 A 225 LEU PRO GLU ARG TRP GLU LYS CYS VAL ALA SER ASP GLY SEQRES 18 A 225 LYS TYR PHE GLU HET MN A 401 1 HET MN A 402 1 HET RLT A 403 32 HETNAM MN MANGANESE (II) ION HETNAM RLT N-(4-FLUOROBENZYL)-5-HYDROXY-1-METHYL-2-(1-METHYL-1- HETNAM 2 RLT {[(5-METHYL-1,3,4-OXADIAZOL-2-YL) HETNAM 3 RLT CARBONYL]AMINO}ETHYL)-6-OXO-1,6-DI HYDROPYRIMIDINE-4- HETNAM 4 RLT CARBOXAMIDE HETSYN RLT RALTEGRAVIR, MK0518 FORMUL 2 MN 2(MN 2+) FORMUL 4 RLT C20 H21 F N6 O5 FORMUL 5 HOH *158(H2 O) HELIX 1 1 ASN A 125 LYS A 146 1 22 HELIX 2 2 PHE A 148 HIS A 150 5 3 HELIX 3 3 ASN A 215 ARG A 234 1 20 HELIX 4 4 ARG A 234 LYS A 239 1 6 HELIX 5 5 ALA A 251 ALA A 256 1 6 HELIX 6 6 ALA A 256 ASN A 267 1 12 HELIX 7 7 SER A 277 LEU A 280 5 4 HELIX 8 8 ALA A 281 HIS A 286 1 6 HELIX 9 9 HIS A 286 ALA A 296 1 11 HELIX 10 10 SER A 302 LYS A 317 1 16 HELIX 11 11 ASP A 318 LYS A 328 1 11 HELIX 12 12 LYS A 328 SER A 339 1 12 SHEET 1 A 5 GLY A 201 LEU A 207 0 SHEET 2 A 5 LYS A 190 ASP A 198 -1 N CYS A 194 O GLU A 206 SHEET 3 A 5 ILE A 152 PHE A 161 -1 N THR A 154 O TRP A 197 SHEET 4 A 5 ILE A 245 LEU A 247 1 O ILE A 245 N VAL A 153 SHEET 5 A 5 GLU A 269 VAL A 270 1 O GLU A 269 N PHE A 246 LINK OD1 ASP A 156 MN MN A 401 1555 1555 2.21 LINK OD2 ASP A 156 MN MN A 402 1555 1555 2.11 LINK OD2 ASP A 249 MN MN A 401 1555 1555 2.25 LINK OD1 ASP A 284 MN MN A 402 1555 1555 2.13 LINK OD2 ASP A 284 MN MN A 402 1555 1555 2.42 LINK MN MN A 401 OAH RLT A 403 1555 1555 2.16 LINK MN MN A 401 OAE RLT A 403 1555 1555 2.16 LINK MN MN A 401 O HOH A 552 1555 1555 2.20 LINK MN MN A 401 O HOH A 555 1555 1555 2.15 LINK MN MN A 402 OAH RLT A 403 1555 1555 2.12 LINK MN MN A 402 OAG RLT A 403 1555 1555 2.26 LINK MN MN A 402 O HOH A 536 1555 1555 2.15 SITE 1 AC1 6 ASP A 156 ASP A 249 MN A 402 RLT A 403 SITE 2 AC1 6 HOH A 552 HOH A 555 SITE 1 AC2 5 ASP A 156 ASP A 284 MN A 401 RLT A 403 SITE 2 AC2 5 HOH A 536 SITE 1 AC3 15 ASP A 156 ASP A 249 ASN A 250 ALA A 251 SITE 2 AC3 15 ALA A 275 TYR A 276 ASP A 284 SER A 302 SITE 3 AC3 15 GLU A 304 SER A 305 LYS A 308 MN A 401 SITE 4 AC3 15 MN A 402 HOH A 552 HOH A 555 CRYST1 44.580 44.580 209.230 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004779 0.00000