data_4MDW # _entry.id 4MDW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MDW pdb_00004mdw 10.2210/pdb4mdw/pdb RCSB RCSB081787 ? ? WWPDB D_1000081787 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416512 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4MDW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-08-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (ydhK) from Bacillus subtilis subsp. subtilis str. 168 at 2.00 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4MDW _cell.length_a 27.692 _cell.length_b 64.174 _cell.length_c 80.499 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MDW _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein YdhK' 18783.787 1 ? ? 'UNP residues 41-205' ? 2 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNNNST(MLY)ESTHDNHSDSSTHEE(MSE)DHSGSADVPEGLQES(MLY)NP(MLY)Y(MLY)VGSQVIINTSH(MSE) (MLY)G(MSE)(MLY)GAEATVTGAYDTTAYVVSYTPTNGGQRVDHH(MLY)WVIQEEI(MLY)DAGD(MLY)TLQPGDQ VILEASH(MSE)(MLY)G(MSE)(MLY)GATAEIDSAE(MLY)TTVY(MSE)VDYTSTTSGE(MLY)V(MLY)NHKWVTE DELSA(MLY) ; _entity_poly.pdbx_seq_one_letter_code_can ;GNNNSTKESTHDNHSDSSTHEEMDHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAEATVTGAYDTTAYVVSYT PTNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTE DELSAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-416512 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 ASN n 1 4 ASN n 1 5 SER n 1 6 THR n 1 7 MLY n 1 8 GLU n 1 9 SER n 1 10 THR n 1 11 HIS n 1 12 ASP n 1 13 ASN n 1 14 HIS n 1 15 SER n 1 16 ASP n 1 17 SER n 1 18 SER n 1 19 THR n 1 20 HIS n 1 21 GLU n 1 22 GLU n 1 23 MSE n 1 24 ASP n 1 25 HIS n 1 26 SER n 1 27 GLY n 1 28 SER n 1 29 ALA n 1 30 ASP n 1 31 VAL n 1 32 PRO n 1 33 GLU n 1 34 GLY n 1 35 LEU n 1 36 GLN n 1 37 GLU n 1 38 SER n 1 39 MLY n 1 40 ASN n 1 41 PRO n 1 42 MLY n 1 43 TYR n 1 44 MLY n 1 45 VAL n 1 46 GLY n 1 47 SER n 1 48 GLN n 1 49 VAL n 1 50 ILE n 1 51 ILE n 1 52 ASN n 1 53 THR n 1 54 SER n 1 55 HIS n 1 56 MSE n 1 57 MLY n 1 58 GLY n 1 59 MSE n 1 60 MLY n 1 61 GLY n 1 62 ALA n 1 63 GLU n 1 64 ALA n 1 65 THR n 1 66 VAL n 1 67 THR n 1 68 GLY n 1 69 ALA n 1 70 TYR n 1 71 ASP n 1 72 THR n 1 73 THR n 1 74 ALA n 1 75 TYR n 1 76 VAL n 1 77 VAL n 1 78 SER n 1 79 TYR n 1 80 THR n 1 81 PRO n 1 82 THR n 1 83 ASN n 1 84 GLY n 1 85 GLY n 1 86 GLN n 1 87 ARG n 1 88 VAL n 1 89 ASP n 1 90 HIS n 1 91 HIS n 1 92 MLY n 1 93 TRP n 1 94 VAL n 1 95 ILE n 1 96 GLN n 1 97 GLU n 1 98 GLU n 1 99 ILE n 1 100 MLY n 1 101 ASP n 1 102 ALA n 1 103 GLY n 1 104 ASP n 1 105 MLY n 1 106 THR n 1 107 LEU n 1 108 GLN n 1 109 PRO n 1 110 GLY n 1 111 ASP n 1 112 GLN n 1 113 VAL n 1 114 ILE n 1 115 LEU n 1 116 GLU n 1 117 ALA n 1 118 SER n 1 119 HIS n 1 120 MSE n 1 121 MLY n 1 122 GLY n 1 123 MSE n 1 124 MLY n 1 125 GLY n 1 126 ALA n 1 127 THR n 1 128 ALA n 1 129 GLU n 1 130 ILE n 1 131 ASP n 1 132 SER n 1 133 ALA n 1 134 GLU n 1 135 MLY n 1 136 THR n 1 137 THR n 1 138 VAL n 1 139 TYR n 1 140 MSE n 1 141 VAL n 1 142 ASP n 1 143 TYR n 1 144 THR n 1 145 SER n 1 146 THR n 1 147 THR n 1 148 SER n 1 149 GLY n 1 150 GLU n 1 151 MLY n 1 152 VAL n 1 153 MLY n 1 154 ASN n 1 155 HIS n 1 156 LYS n 1 157 TRP n 1 158 VAL n 1 159 THR n 1 160 GLU n 1 161 ASP n 1 162 GLU n 1 163 LEU n 1 164 SER n 1 165 ALA n 1 166 MLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ydhK, BSU05790' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis subsp. subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YDHK_BACSU _struct_ref.pdbx_db_accession O05503 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NNNSTKESTHDNHSDSSTHEEMDHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAEATVTGAYDTTAYVVSYTP TNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTED ELSAK ; _struct_ref.pdbx_align_begin 41 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MDW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O05503 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 41 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4MDW _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O05503 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4MDW # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;5.0% polyethylene glycol 3000, 40.0% polyethylene glycol 400, 0.1M MES pH 6.0, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-08-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97926 1.0 3 0.97885 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97926,0.97885 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4MDW _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 27.692 _reflns.number_obs 9897 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.percent_possible_obs 94.700 _reflns.B_iso_Wilson_estimate 26.410 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.070 2382 ? 1527 0.692 1.4 ? ? ? ? ? 83.900 1 1 2.070 2.150 3097 ? 1727 0.605 1.7 ? ? ? ? ? 95.700 2 1 2.150 2.250 3375 ? 1873 0.431 2.2 ? ? ? ? ? 96.900 3 1 2.250 2.370 3169 ? 1824 0.360 2.7 ? ? ? ? ? 96.000 4 1 2.370 2.520 3206 ? 1814 0.267 3.6 ? ? ? ? ? 95.400 5 1 2.520 2.710 3152 ? 1767 0.238 4.1 ? ? ? ? ? 96.700 6 1 2.710 2.990 3172 ? 1847 0.143 5.9 ? ? ? ? ? 95.900 7 1 2.990 3.420 3301 ? 1811 0.070 10.8 ? ? ? ? ? 96.500 8 1 3.420 4.300 3145 ? 1768 0.038 16.9 ? ? ? ? ? 95.400 9 1 4.300 ? 3242 ? 1793 0.030 21.1 ? ? ? ? ? 94.100 10 1 # _refine.entry_id 4MDW _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 27.692 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.4300 _refine.ls_number_reflns_obs 9863 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. ZERO OCCUPANCY HYDROGENS WERE INCLUDED DURING REFINEMENT TO IMPROVE THE ANTI-BUMPING RESTRAINTS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. MAD PHASE RESTRAINTS WERE USED DURING REFINEMENT. 7. LYSINE 195 APPEARS TO HAVE BEEN PROTECTED FROM REDUCTIVE METHYLATION AND WAS MODELED AS LYSINE. ALL OTHER LYSINES HAVE BEEN MODELED AS MLY (N-DIMETHYL-LYSINE). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1824 _refine.ls_R_factor_R_work 0.1788 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2597 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_number_reflns_R_free 475 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 36.6102 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7154 _refine.aniso_B[2][2] -2.8983 _refine.aniso_B[3][3] 2.1829 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9550 _refine.correlation_coeff_Fo_to_Fc_free 0.9135 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 114.280 _refine.B_iso_min 16.010 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4MDW _refine_analyze.Luzzati_coordinate_error_obs 0.234 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1136 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 1243 _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 27.692 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 605 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 32 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 329 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2264 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 7 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 157 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance 1 ? ? 1.000 HARMONIC 'X-RAY DIFFRACTION' t_utility_angle 2 ? ? 1.000 HARMONIC 'X-RAY DIFFRACTION' t_utility_torsion 1 ? ? 1.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_ideal_dist_contact 2382 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2264 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 4077 1.210 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.900 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 3.190 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0000 _refine_ls_shell.d_res_low 2.2400 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 96.4300 _refine_ls_shell.number_reflns_R_work 2516 _refine_ls_shell.R_factor_all 0.2064 _refine_ls_shell.R_factor_R_work 0.2046 _refine_ls_shell.R_factor_R_free 0.2452 _refine_ls_shell.percent_reflns_R_free 4.8100 _refine_ls_shell.number_reflns_R_free 127 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2643 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF1541 family protein (ydhK) from Bacillus subtilis subsp. subtilis str. 168 at 2.00 A resolution' _struct.entry_id 4MDW _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;PF07563 family, DUF1541, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4MDW # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 20 ? HIS A 25 ? HIS A 59 HIS A 64 1 ? 6 HELX_P HELX_P2 2 GLU A 97 ? ILE A 99 ? GLU A 136 ILE A 138 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 22 C ? ? ? 1_555 A MSE 23 N ? ? A GLU 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.363 ? ? covale2 covale both ? A MSE 23 C ? ? ? 1_555 A ASP 24 N ? ? A MSE 62 A ASP 63 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale3 covale both ? A SER 38 C ? ? ? 1_555 A MLY 39 N ? ? A SER 77 A MLY 78 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MLY 39 C ? ? ? 1_555 A ASN 40 N ? ? A MLY 78 A ASN 79 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale5 covale both ? A PRO 41 C ? ? ? 1_555 A MLY 42 N ? ? A PRO 80 A MLY 81 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale6 covale both ? A MLY 42 C ? ? ? 1_555 A TYR 43 N ? ? A MLY 81 A TYR 82 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale7 covale both ? A TYR 43 C ? ? ? 1_555 A MLY 44 N ? ? A TYR 82 A MLY 83 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MLY 44 C ? ? ? 1_555 A VAL 45 N ? ? A MLY 83 A VAL 84 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale9 covale both ? A HIS 55 C ? ? ? 1_555 A MSE 56 N ? ? A HIS 94 A MSE 95 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale10 covale both ? A MSE 56 C ? ? ? 1_555 A MLY 57 N ? ? A MSE 95 A MLY 96 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale11 covale both ? A MLY 57 C ? ? ? 1_555 A GLY 58 N ? ? A MLY 96 A GLY 97 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? A GLY 58 C ? ? ? 1_555 A MSE 59 N ? ? A GLY 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale13 covale both ? A MSE 59 C ? ? ? 1_555 A MLY 60 N ? ? A MSE 98 A MLY 99 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale14 covale both ? A MLY 60 C ? ? ? 1_555 A GLY 61 N ? ? A MLY 99 A GLY 100 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A HIS 91 C ? ? ? 1_555 A MLY 92 N ? ? A HIS 130 A MLY 131 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale16 covale both ? A MLY 92 C ? ? ? 1_555 A TRP 93 N ? ? A MLY 131 A TRP 132 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale17 covale both ? A ILE 99 C ? ? ? 1_555 A MLY 100 N ? ? A ILE 138 A MLY 139 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale18 covale both ? A MLY 100 C ? ? ? 1_555 A ASP 101 N ? ? A MLY 139 A ASP 140 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale19 covale both ? A ASP 104 C ? ? ? 1_555 A MLY 105 N ? ? A ASP 143 A MLY 144 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale20 covale both ? A MLY 105 C ? ? ? 1_555 A THR 106 N ? ? A MLY 144 A THR 145 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale21 covale both ? A HIS 119 C ? ? ? 1_555 A MSE 120 N ? ? A HIS 158 A MSE 159 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale22 covale both ? A MSE 120 C ? ? ? 1_555 A MLY 121 N ? ? A MSE 159 A MLY 160 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale23 covale both ? A MLY 121 C ? ? ? 1_555 A GLY 122 N ? ? A MLY 160 A GLY 161 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale24 covale both ? A GLY 122 C ? ? ? 1_555 A MSE 123 N ? ? A GLY 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale25 covale both ? A MSE 123 C ? ? ? 1_555 A MLY 124 N ? ? A MSE 162 A MLY 163 1_555 ? ? ? ? ? ? ? 1.357 ? ? covale26 covale both ? A MLY 124 C ? ? ? 1_555 A GLY 125 N ? ? A MLY 163 A GLY 164 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale27 covale both ? A GLU 134 C ? ? ? 1_555 A MLY 135 N ? ? A GLU 173 A MLY 174 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale28 covale both ? A MLY 135 C ? ? ? 1_555 A THR 136 N ? ? A MLY 174 A THR 175 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? A TYR 139 C ? ? ? 1_555 A MSE 140 N ? ? A TYR 178 A MSE 179 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale30 covale both ? A MSE 140 C ? ? ? 1_555 A VAL 141 N ? ? A MSE 179 A VAL 180 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale31 covale both ? A GLU 150 C ? ? ? 1_555 A MLY 151 N ? ? A GLU 189 A MLY 190 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale32 covale both ? A MLY 151 C ? ? ? 1_555 A VAL 152 N ? ? A MLY 190 A VAL 191 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale33 covale both ? A VAL 152 C ? ? ? 1_555 A MLY 153 N ? ? A VAL 191 A MLY 192 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale34 covale both ? A MLY 153 C ? ? ? 1_555 A ASN 154 N ? ? A MLY 192 A ASN 193 1_555 ? ? ? ? ? ? ? 1.361 ? ? covale35 covale both ? A ALA 165 C ? ? ? 1_555 A MLY 166 N ? ? A ALA 204 A MLY 205 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MLY 92 A . ? MLY 131 A TRP 93 A ? TRP 132 A 1 -4.06 2 LYS 156 A . ? LYS 195 A TRP 157 A ? TRP 196 A 1 -6.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 88 ? ILE A 95 ? VAL A 127 ILE A 134 A 2 GLU A 63 ? TYR A 79 ? GLU A 102 TYR A 118 A 3 THR A 127 ? THR A 144 ? THR A 166 THR A 183 A 4 MLY A 151 ? THR A 159 ? MLY A 190 THR A 198 B 1 GLN A 112 ? ILE A 114 ? GLN A 151 ILE A 153 B 2 THR A 127 ? THR A 144 ? THR A 166 THR A 183 B 3 GLU A 63 ? TYR A 79 ? GLU A 102 TYR A 118 B 4 GLN A 48 ? ILE A 51 ? GLN A 87 ILE A 90 B 5 LEU A 163 ? ALA A 165 ? LEU A 202 ALA A 204 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 88 ? O VAL A 127 N TYR A 79 ? N TYR A 118 A 2 3 N SER A 78 ? N SER A 117 O GLU A 129 ? O GLU A 168 A 3 4 N TYR A 143 ? N TYR A 182 O VAL A 152 ? O VAL A 191 B 1 2 N VAL A 113 ? N VAL A 152 O ALA A 128 ? O ALA A 167 B 2 3 O GLU A 129 ? O GLU A 168 N SER A 78 ? N SER A 117 B 3 4 O ALA A 64 ? O ALA A 103 N VAL A 49 ? N VAL A 88 B 4 5 N ILE A 50 ? N ILE A 89 O SER A 164 ? O SER A 203 # _atom_sites.entry_id 4MDW _atom_sites.fract_transf_matrix[1][1] 0.036112 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015583 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012423 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASN 2 41 ? ? ? A . n A 1 3 ASN 3 42 ? ? ? A . n A 1 4 ASN 4 43 ? ? ? A . n A 1 5 SER 5 44 ? ? ? A . n A 1 6 THR 6 45 ? ? ? A . n A 1 7 MLY 7 46 ? ? ? A . n A 1 8 GLU 8 47 ? ? ? A . n A 1 9 SER 9 48 ? ? ? A . n A 1 10 THR 10 49 ? ? ? A . n A 1 11 HIS 11 50 ? ? ? A . n A 1 12 ASP 12 51 ? ? ? A . n A 1 13 ASN 13 52 ? ? ? A . n A 1 14 HIS 14 53 ? ? ? A . n A 1 15 SER 15 54 ? ? ? A . n A 1 16 ASP 16 55 ? ? ? A . n A 1 17 SER 17 56 ? ? ? A . n A 1 18 SER 18 57 ? ? ? A . n A 1 19 THR 19 58 ? ? ? A . n A 1 20 HIS 20 59 59 HIS HIS A . n A 1 21 GLU 21 60 60 GLU GLU A . n A 1 22 GLU 22 61 61 GLU GLU A . n A 1 23 MSE 23 62 62 MSE MSE A . n A 1 24 ASP 24 63 63 ASP ASP A . n A 1 25 HIS 25 64 64 HIS HIS A . n A 1 26 SER 26 65 65 SER SER A . n A 1 27 GLY 27 66 66 GLY GLY A . n A 1 28 SER 28 67 67 SER SER A . n A 1 29 ALA 29 68 68 ALA ALA A . n A 1 30 ASP 30 69 69 ASP ASP A . n A 1 31 VAL 31 70 70 VAL VAL A . n A 1 32 PRO 32 71 71 PRO PRO A . n A 1 33 GLU 33 72 72 GLU GLU A . n A 1 34 GLY 34 73 73 GLY GLY A . n A 1 35 LEU 35 74 74 LEU LEU A . n A 1 36 GLN 36 75 75 GLN GLN A . n A 1 37 GLU 37 76 76 GLU GLU A . n A 1 38 SER 38 77 77 SER SER A . n A 1 39 MLY 39 78 78 MLY MLY A . n A 1 40 ASN 40 79 79 ASN ASN A . n A 1 41 PRO 41 80 80 PRO PRO A . n A 1 42 MLY 42 81 81 MLY MLY A . n A 1 43 TYR 43 82 82 TYR TYR A . n A 1 44 MLY 44 83 83 MLY MLY A . n A 1 45 VAL 45 84 84 VAL VAL A . n A 1 46 GLY 46 85 85 GLY GLY A . n A 1 47 SER 47 86 86 SER SER A . n A 1 48 GLN 48 87 87 GLN GLN A . n A 1 49 VAL 49 88 88 VAL VAL A . n A 1 50 ILE 50 89 89 ILE ILE A . n A 1 51 ILE 51 90 90 ILE ILE A . n A 1 52 ASN 52 91 91 ASN ASN A . n A 1 53 THR 53 92 92 THR THR A . n A 1 54 SER 54 93 93 SER SER A . n A 1 55 HIS 55 94 94 HIS HIS A . n A 1 56 MSE 56 95 95 MSE MSE A . n A 1 57 MLY 57 96 96 MLY MLY A . n A 1 58 GLY 58 97 97 GLY GLY A . n A 1 59 MSE 59 98 98 MSE MSE A . n A 1 60 MLY 60 99 99 MLY MLY A . n A 1 61 GLY 61 100 100 GLY GLY A . n A 1 62 ALA 62 101 101 ALA ALA A . n A 1 63 GLU 63 102 102 GLU GLU A . n A 1 64 ALA 64 103 103 ALA ALA A . n A 1 65 THR 65 104 104 THR THR A . n A 1 66 VAL 66 105 105 VAL VAL A . n A 1 67 THR 67 106 106 THR THR A . n A 1 68 GLY 68 107 107 GLY GLY A . n A 1 69 ALA 69 108 108 ALA ALA A . n A 1 70 TYR 70 109 109 TYR TYR A . n A 1 71 ASP 71 110 110 ASP ASP A . n A 1 72 THR 72 111 111 THR THR A . n A 1 73 THR 73 112 112 THR THR A . n A 1 74 ALA 74 113 113 ALA ALA A . n A 1 75 TYR 75 114 114 TYR TYR A . n A 1 76 VAL 76 115 115 VAL VAL A . n A 1 77 VAL 77 116 116 VAL VAL A . n A 1 78 SER 78 117 117 SER SER A . n A 1 79 TYR 79 118 118 TYR TYR A . n A 1 80 THR 80 119 119 THR THR A . n A 1 81 PRO 81 120 120 PRO PRO A . n A 1 82 THR 82 121 121 THR THR A . n A 1 83 ASN 83 122 122 ASN ASN A . n A 1 84 GLY 84 123 123 GLY GLY A . n A 1 85 GLY 85 124 124 GLY GLY A . n A 1 86 GLN 86 125 125 GLN GLN A . n A 1 87 ARG 87 126 126 ARG ARG A . n A 1 88 VAL 88 127 127 VAL VAL A . n A 1 89 ASP 89 128 128 ASP ASP A . n A 1 90 HIS 90 129 129 HIS HIS A . n A 1 91 HIS 91 130 130 HIS HIS A . n A 1 92 MLY 92 131 131 MLY MLY A . n A 1 93 TRP 93 132 132 TRP TRP A . n A 1 94 VAL 94 133 133 VAL VAL A . n A 1 95 ILE 95 134 134 ILE ILE A . n A 1 96 GLN 96 135 135 GLN GLN A . n A 1 97 GLU 97 136 136 GLU GLU A . n A 1 98 GLU 98 137 137 GLU GLU A . n A 1 99 ILE 99 138 138 ILE ILE A . n A 1 100 MLY 100 139 139 MLY MLY A . n A 1 101 ASP 101 140 140 ASP ASP A . n A 1 102 ALA 102 141 141 ALA ALA A . n A 1 103 GLY 103 142 142 GLY GLY A . n A 1 104 ASP 104 143 143 ASP ASP A . n A 1 105 MLY 105 144 144 MLY MLY A . n A 1 106 THR 106 145 145 THR THR A . n A 1 107 LEU 107 146 146 LEU LEU A . n A 1 108 GLN 108 147 147 GLN GLN A . n A 1 109 PRO 109 148 148 PRO PRO A . n A 1 110 GLY 110 149 149 GLY GLY A . n A 1 111 ASP 111 150 150 ASP ASP A . n A 1 112 GLN 112 151 151 GLN GLN A . n A 1 113 VAL 113 152 152 VAL VAL A . n A 1 114 ILE 114 153 153 ILE ILE A . n A 1 115 LEU 115 154 154 LEU LEU A . n A 1 116 GLU 116 155 155 GLU GLU A . n A 1 117 ALA 117 156 156 ALA ALA A . n A 1 118 SER 118 157 157 SER SER A . n A 1 119 HIS 119 158 158 HIS HIS A . n A 1 120 MSE 120 159 159 MSE MSE A . n A 1 121 MLY 121 160 160 MLY MLY A . n A 1 122 GLY 122 161 161 GLY GLY A . n A 1 123 MSE 123 162 162 MSE MSE A . n A 1 124 MLY 124 163 163 MLY MLY A . n A 1 125 GLY 125 164 164 GLY GLY A . n A 1 126 ALA 126 165 165 ALA ALA A . n A 1 127 THR 127 166 166 THR THR A . n A 1 128 ALA 128 167 167 ALA ALA A . n A 1 129 GLU 129 168 168 GLU GLU A . n A 1 130 ILE 130 169 169 ILE ILE A . n A 1 131 ASP 131 170 170 ASP ASP A . n A 1 132 SER 132 171 171 SER SER A . n A 1 133 ALA 133 172 172 ALA ALA A . n A 1 134 GLU 134 173 173 GLU GLU A . n A 1 135 MLY 135 174 174 MLY MLY A . n A 1 136 THR 136 175 175 THR THR A . n A 1 137 THR 137 176 176 THR THR A . n A 1 138 VAL 138 177 177 VAL VAL A . n A 1 139 TYR 139 178 178 TYR TYR A . n A 1 140 MSE 140 179 179 MSE MSE A . n A 1 141 VAL 141 180 180 VAL VAL A . n A 1 142 ASP 142 181 181 ASP ASP A . n A 1 143 TYR 143 182 182 TYR TYR A . n A 1 144 THR 144 183 183 THR THR A . n A 1 145 SER 145 184 184 SER SER A . n A 1 146 THR 146 185 185 THR THR A . n A 1 147 THR 147 186 186 THR THR A . n A 1 148 SER 148 187 187 SER SER A . n A 1 149 GLY 149 188 188 GLY GLY A . n A 1 150 GLU 150 189 189 GLU GLU A . n A 1 151 MLY 151 190 190 MLY MLY A . n A 1 152 VAL 152 191 191 VAL VAL A . n A 1 153 MLY 153 192 192 MLY MLY A . n A 1 154 ASN 154 193 193 ASN ASN A . n A 1 155 HIS 155 194 194 HIS HIS A . n A 1 156 LYS 156 195 195 LYS LYS A . n A 1 157 TRP 157 196 196 TRP TRP A . n A 1 158 VAL 158 197 197 VAL VAL A . n A 1 159 THR 159 198 198 THR THR A . n A 1 160 GLU 160 199 199 GLU GLU A . n A 1 161 ASP 161 200 200 ASP ASP A . n A 1 162 GLU 162 201 201 GLU GLU A . n A 1 163 LEU 163 202 202 LEU LEU A . n A 1 164 SER 164 203 203 SER SER A . n A 1 165 ALA 165 204 204 ALA ALA A . n A 1 166 MLY 166 205 205 MLY MLY A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 300 300 HOH HOH A . B 2 HOH 2 301 301 HOH HOH A . B 2 HOH 3 302 302 HOH HOH A . B 2 HOH 4 303 303 HOH HOH A . B 2 HOH 5 304 304 HOH HOH A . B 2 HOH 6 305 305 HOH HOH A . B 2 HOH 7 306 306 HOH HOH A . B 2 HOH 8 307 307 HOH HOH A . B 2 HOH 9 308 308 HOH HOH A . B 2 HOH 10 309 309 HOH HOH A . B 2 HOH 11 310 310 HOH HOH A . B 2 HOH 12 311 311 HOH HOH A . B 2 HOH 13 312 312 HOH HOH A . B 2 HOH 14 313 313 HOH HOH A . B 2 HOH 15 314 314 HOH HOH A . B 2 HOH 16 315 315 HOH HOH A . B 2 HOH 17 316 316 HOH HOH A . B 2 HOH 18 317 317 HOH HOH A . B 2 HOH 19 318 318 HOH HOH A . B 2 HOH 20 319 319 HOH HOH A . B 2 HOH 21 320 320 HOH HOH A . B 2 HOH 22 321 321 HOH HOH A . B 2 HOH 23 322 322 HOH HOH A . B 2 HOH 24 323 323 HOH HOH A . B 2 HOH 25 324 324 HOH HOH A . B 2 HOH 26 325 325 HOH HOH A . B 2 HOH 27 326 326 HOH HOH A . B 2 HOH 28 327 327 HOH HOH A . B 2 HOH 29 328 328 HOH HOH A . B 2 HOH 30 329 329 HOH HOH A . B 2 HOH 31 330 330 HOH HOH A . B 2 HOH 32 331 331 HOH HOH A . B 2 HOH 33 332 332 HOH HOH A . B 2 HOH 34 333 333 HOH HOH A . B 2 HOH 35 334 334 HOH HOH A . B 2 HOH 36 335 335 HOH HOH A . B 2 HOH 37 336 336 HOH HOH A . B 2 HOH 38 337 337 HOH HOH A . B 2 HOH 39 338 338 HOH HOH A . B 2 HOH 40 339 339 HOH HOH A . B 2 HOH 41 340 340 HOH HOH A . B 2 HOH 42 341 341 HOH HOH A . B 2 HOH 43 342 342 HOH HOH A . B 2 HOH 44 343 343 HOH HOH A . B 2 HOH 45 344 344 HOH HOH A . B 2 HOH 46 345 345 HOH HOH A . B 2 HOH 47 346 346 HOH HOH A . B 2 HOH 48 347 347 HOH HOH A . B 2 HOH 49 348 348 HOH HOH A . B 2 HOH 50 349 349 HOH HOH A . B 2 HOH 51 350 350 HOH HOH A . B 2 HOH 52 351 351 HOH HOH A . B 2 HOH 53 352 352 HOH HOH A . B 2 HOH 54 353 353 HOH HOH A . B 2 HOH 55 354 354 HOH HOH A . B 2 HOH 56 355 355 HOH HOH A . B 2 HOH 57 356 356 HOH HOH A . B 2 HOH 58 357 357 HOH HOH A . B 2 HOH 59 358 358 HOH HOH A . B 2 HOH 60 359 359 HOH HOH A . B 2 HOH 61 360 360 HOH HOH A . B 2 HOH 62 361 361 HOH HOH A . B 2 HOH 63 362 362 HOH HOH A . B 2 HOH 64 363 363 HOH HOH A . B 2 HOH 65 364 364 HOH HOH A . B 2 HOH 66 365 365 HOH HOH A . B 2 HOH 67 366 366 HOH HOH A . B 2 HOH 68 367 367 HOH HOH A . B 2 HOH 69 368 368 HOH HOH A . B 2 HOH 70 369 369 HOH HOH A . B 2 HOH 71 370 370 HOH HOH A . B 2 HOH 72 371 371 HOH HOH A . B 2 HOH 73 372 372 HOH HOH A . B 2 HOH 74 373 373 HOH HOH A . B 2 HOH 75 374 374 HOH HOH A . B 2 HOH 76 375 375 HOH HOH A . B 2 HOH 77 376 376 HOH HOH A . B 2 HOH 78 377 377 HOH HOH A . B 2 HOH 79 378 378 HOH HOH A . B 2 HOH 80 379 379 HOH HOH A . B 2 HOH 81 380 380 HOH HOH A . B 2 HOH 82 381 381 HOH HOH A . B 2 HOH 83 382 382 HOH HOH A . B 2 HOH 84 383 383 HOH HOH A . B 2 HOH 85 384 384 HOH HOH A . B 2 HOH 86 385 385 HOH HOH A . B 2 HOH 87 386 386 HOH HOH A . B 2 HOH 88 387 387 HOH HOH A . B 2 HOH 89 388 388 HOH HOH A . B 2 HOH 90 389 389 HOH HOH A . B 2 HOH 91 390 390 HOH HOH A . B 2 HOH 92 391 391 HOH HOH A . B 2 HOH 93 392 392 HOH HOH A . B 2 HOH 94 393 393 HOH HOH A . B 2 HOH 95 394 394 HOH HOH A . B 2 HOH 96 395 395 HOH HOH A . B 2 HOH 97 396 396 HOH HOH A . B 2 HOH 98 397 397 HOH HOH A . B 2 HOH 99 398 398 HOH HOH A . B 2 HOH 100 399 399 HOH HOH A . B 2 HOH 101 400 400 HOH HOH A . B 2 HOH 102 401 401 HOH HOH A . B 2 HOH 103 402 402 HOH HOH A . B 2 HOH 104 403 403 HOH HOH A . B 2 HOH 105 404 404 HOH HOH A . B 2 HOH 106 405 405 HOH HOH A . B 2 HOH 107 406 406 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 62 ? MET SELENOMETHIONINE 2 A MLY 39 A MLY 78 ? LYS N-DIMETHYL-LYSINE 3 A MLY 42 A MLY 81 ? LYS N-DIMETHYL-LYSINE 4 A MLY 44 A MLY 83 ? LYS N-DIMETHYL-LYSINE 5 A MSE 56 A MSE 95 ? MET SELENOMETHIONINE 6 A MLY 57 A MLY 96 ? LYS N-DIMETHYL-LYSINE 7 A MSE 59 A MSE 98 ? MET SELENOMETHIONINE 8 A MLY 60 A MLY 99 ? LYS N-DIMETHYL-LYSINE 9 A MLY 92 A MLY 131 ? LYS N-DIMETHYL-LYSINE 10 A MLY 100 A MLY 139 ? LYS N-DIMETHYL-LYSINE 11 A MLY 105 A MLY 144 ? LYS N-DIMETHYL-LYSINE 12 A MSE 120 A MSE 159 ? MET SELENOMETHIONINE 13 A MLY 121 A MLY 160 ? LYS N-DIMETHYL-LYSINE 14 A MSE 123 A MSE 162 ? MET SELENOMETHIONINE 15 A MLY 124 A MLY 163 ? LYS N-DIMETHYL-LYSINE 16 A MLY 135 A MLY 174 ? LYS N-DIMETHYL-LYSINE 17 A MSE 140 A MSE 179 ? MET SELENOMETHIONINE 18 A MLY 151 A MLY 190 ? LYS N-DIMETHYL-LYSINE 19 A MLY 153 A MLY 192 ? LYS N-DIMETHYL-LYSINE 20 A MLY 166 A MLY 205 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.1254 _pdbx_refine_tls.origin_y 33.4174 _pdbx_refine_tls.origin_z 19.4916 _pdbx_refine_tls.T[1][1] -0.1422 _pdbx_refine_tls.T[2][2] 0.1664 _pdbx_refine_tls.T[3][3] -0.1406 _pdbx_refine_tls.T[1][2] -0.0151 _pdbx_refine_tls.T[1][3] 0.0012 _pdbx_refine_tls.T[2][3] 0.0086 _pdbx_refine_tls.L[1][1] 0.6622 _pdbx_refine_tls.L[2][2] 0.4309 _pdbx_refine_tls.L[3][3] 2.4243 _pdbx_refine_tls.L[1][2] 0.0358 _pdbx_refine_tls.L[1][3] 0.1280 _pdbx_refine_tls.L[2][3] -0.0617 _pdbx_refine_tls.S[1][1] -0.0352 _pdbx_refine_tls.S[2][2] -0.0133 _pdbx_refine_tls.S[3][3] 0.0486 _pdbx_refine_tls.S[1][2] -0.0421 _pdbx_refine_tls.S[1][3] -0.0028 _pdbx_refine_tls.S[2][3] -0.0156 _pdbx_refine_tls.S[2][1] 0.0387 _pdbx_refine_tls.S[3][1] -0.0202 _pdbx_refine_tls.S[3][2] -0.0427 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details '{ A|59-205 }' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4MDW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 41-205 OF THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 140 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 58.99 _pdbx_validate_torsion.psi 18.78 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 69 ? CG ? A ASP 30 CG 2 1 Y 1 A ASP 69 ? OD1 ? A ASP 30 OD1 3 1 Y 1 A ASP 69 ? OD2 ? A ASP 30 OD2 4 1 Y 1 A GLU 72 ? CG ? A GLU 33 CG 5 1 Y 1 A GLU 72 ? CD ? A GLU 33 CD 6 1 Y 1 A GLU 72 ? OE1 ? A GLU 33 OE1 7 1 Y 1 A GLU 72 ? OE2 ? A GLU 33 OE2 8 1 Y 1 A MLY 78 ? CG ? A MLY 39 CG 9 1 Y 1 A MLY 78 ? CD ? A MLY 39 CD 10 1 Y 1 A MLY 78 ? CE ? A MLY 39 CE 11 1 Y 1 A MLY 78 ? NZ ? A MLY 39 NZ 12 1 Y 1 A MLY 78 ? CH1 ? A MLY 39 CH1 13 1 Y 1 A MLY 78 ? CH2 ? A MLY 39 CH2 14 1 Y 1 A MLY 96 ? CH1 ? A MLY 57 CH1 15 1 Y 1 A MLY 96 ? CH2 ? A MLY 57 CH2 16 1 Y 1 A MLY 99 ? CH1 ? A MLY 60 CH1 17 1 Y 1 A MLY 99 ? CH2 ? A MLY 60 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 41 ? A ASN 2 3 1 Y 1 A ASN 42 ? A ASN 3 4 1 Y 1 A ASN 43 ? A ASN 4 5 1 Y 1 A SER 44 ? A SER 5 6 1 Y 1 A THR 45 ? A THR 6 7 1 Y 1 A MLY 46 ? A MLY 7 8 1 Y 1 A GLU 47 ? A GLU 8 9 1 Y 1 A SER 48 ? A SER 9 10 1 Y 1 A THR 49 ? A THR 10 11 1 Y 1 A HIS 50 ? A HIS 11 12 1 Y 1 A ASP 51 ? A ASP 12 13 1 Y 1 A ASN 52 ? A ASN 13 14 1 Y 1 A HIS 53 ? A HIS 14 15 1 Y 1 A SER 54 ? A SER 15 16 1 Y 1 A ASP 55 ? A ASP 16 17 1 Y 1 A SER 56 ? A SER 17 18 1 Y 1 A SER 57 ? A SER 18 19 1 Y 1 A THR 58 ? A THR 19 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #