HEADER HYDROLASE/HYDROLASE INHIBITOR 25-AUG-13 4ME7 TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS TOXIN MAZF IN COMPLEX WITH TITLE 2 COGNATE ANTITOXIN MAZE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA INTERFERASE ENDOA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ENDORIBONUCLEASE ENDOA, TOXIN ENDOA, MRNA INTERFERASE MAZF- COMPND 5 BS, MAZF-BS; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ANTITOXIN ENDOAI; COMPND 10 CHAIN: E, F; COMPND 11 SYNONYM: ANTITOXIN MAZE-BS, MAZE-BS, ENDOA INHIBITOR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU04660, MAZF, NDOA, YDCE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 13 ORGANISM_TAXID: 224308; SOURCE 14 STRAIN: 168; SOURCE 15 GENE: BSU04650, MAZE, NDOAI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET KEYWDS TOXIN-ANTITOXIN SYSTEM, MAZE-MAZF, STRESS RESPONSE, MRNA CLEVAGE, KEYWDS 2 MAZE, ANTITOXIN, MAZF, MRNA INTERFERASE, ENDOA, YDCE, HYDROLASE- KEYWDS 3 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.K.SIMANSHU,D.J.PATEL REVDAT 6 06-DEC-23 4ME7 1 REMARK REVDAT 5 20-SEP-23 4ME7 1 SEQADV LINK REVDAT 4 15-NOV-17 4ME7 1 REMARK REVDAT 3 27-NOV-13 4ME7 1 JRNL REVDAT 2 30-OCT-13 4ME7 1 JRNL REVDAT 1 23-OCT-13 4ME7 0 JRNL AUTH D.K.SIMANSHU,Y.YAMAGUCHI,J.H.PARK,M.INOUYE,D.J.PATEL JRNL TITL STRUCTURAL BASIS OF MRNA RECOGNITION AND CLEAVAGE BY TOXIN JRNL TITL 2 MAZF AND ITS REGULATION BY ANTITOXIN MAZE IN BACILLUS JRNL TITL 3 SUBTILIS. JRNL REF MOL.CELL V. 52 447 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 24120662 JRNL DOI 10.1016/J.MOLCEL.2013.09.006 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 17139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3387 - 6.6738 0.98 1383 153 0.2483 0.2719 REMARK 3 2 6.6738 - 5.2998 1.00 1349 151 0.2674 0.3057 REMARK 3 3 5.2998 - 4.6306 1.00 1336 148 0.2215 0.2677 REMARK 3 4 4.6306 - 4.2076 1.00 1310 145 0.2058 0.2722 REMARK 3 5 4.2076 - 3.9062 1.00 1314 146 0.2402 0.2931 REMARK 3 6 3.9062 - 3.6760 1.00 1298 144 0.2579 0.3448 REMARK 3 7 3.6760 - 3.4920 1.00 1307 145 0.2682 0.2932 REMARK 3 8 3.4920 - 3.3400 1.00 1302 145 0.2771 0.3251 REMARK 3 9 3.3400 - 3.2115 1.00 1291 143 0.2970 0.3605 REMARK 3 10 3.2115 - 3.1007 1.00 1285 144 0.3249 0.3876 REMARK 3 11 3.1007 - 3.0037 0.98 1263 141 0.3558 0.3729 REMARK 3 12 3.0037 - 2.9179 0.77 987 109 0.3565 0.4441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4653 REMARK 3 ANGLE : 1.085 6266 REMARK 3 CHIRALITY : 0.067 751 REMARK 3 PLANARITY : 0.003 806 REMARK 3 DIHEDRAL : 14.676 1796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.2013 21.1067 -24.0215 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.3140 REMARK 3 T33: 0.2255 T12: 0.0916 REMARK 3 T13: -0.0047 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 3.3098 L22: 0.9715 REMARK 3 L33: 0.5537 L12: 1.0549 REMARK 3 L13: -0.2562 L23: -0.2527 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: 0.6349 S13: 0.0141 REMARK 3 S21: -0.0248 S22: -0.0296 S23: -0.0319 REMARK 3 S31: 0.0874 S32: 0.0156 S33: 0.0411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'B' AND (RESSEQ 1:16 OR RESSEQ REMARK 3 24:113 ) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ 1:16 OR RESSEQ REMARK 3 24:113 ) REMARK 3 ATOM PAIRS NUMBER : 798 REMARK 3 RMSD : 0.076 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'B' AND (RESSEQ 1:16 OR RESSEQ REMARK 3 24:113 ) REMARK 3 SELECTION : CHAIN 'C' AND (RESSEQ 1:16 OR RESSEQ REMARK 3 24:113 ) REMARK 3 ATOM PAIRS NUMBER : 838 REMARK 3 RMSD : 0.065 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'E' AND (RESSEQ 7:83 ) REMARK 3 SELECTION : CHAIN 'F' AND (RESSEQ 7:83 ) REMARK 3 ATOM PAIRS NUMBER : 614 REMARK 3 RMSD : 0.063 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ME7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.918 REMARK 200 RESOLUTION RANGE LOW (A) : 45.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: PDB ENTRY 4MDX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 6.5 AND 3% (V/V) ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.75150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.16700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.80900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.16700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.75150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.80900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 13A REMARK 465 PRO A 13B REMARK 465 VAL A 13C REMARK 465 VAL A 13D REMARK 465 GLY A 13E REMARK 465 SER A 13F REMARK 465 GLU A 13G REMARK 465 GLN A 13H REMARK 465 GLY A 13I REMARK 465 GLY A 13J REMARK 465 PHE A 115 REMARK 465 VAL B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 GLU B 20 REMARK 465 GLN B 21 REMARK 465 GLY B 22 REMARK 465 ASP B 115 REMARK 465 PHE B 116 REMARK 465 GLU C 20 REMARK 465 GLN C 21 REMARK 465 GLY C 22 REMARK 465 GLY C 23 REMARK 465 ASP C 115 REMARK 465 PHE C 116 REMARK 465 LEU D 13 REMARK 465 SER D 14 REMARK 465 PRO D 15 REMARK 465 VAL D 16 REMARK 465 VAL D 17 REMARK 465 GLY D 18 REMARK 465 SER D 19 REMARK 465 GLU D 20 REMARK 465 GLN D 21 REMARK 465 GLY D 22 REMARK 465 GLY D 23 REMARK 465 ASP D 115 REMARK 465 PHE D 116 REMARK 465 SER E 0 REMARK 465 MSE E 1 REMARK 465 SER E 2 REMARK 465 GLU E 3 REMARK 465 SER E 4 REMARK 465 SER E 5 REMARK 465 THR E 84 REMARK 465 THR E 85 REMARK 465 VAL E 86 REMARK 465 GLU E 87 REMARK 465 ARG E 88 REMARK 465 LEU E 89 REMARK 465 VAL E 90 REMARK 465 SER E 91 REMARK 465 GLY E 92 REMARK 465 GLY E 93 REMARK 465 SER F 0 REMARK 465 MSE F 1 REMARK 465 SER F 2 REMARK 465 GLU F 3 REMARK 465 SER F 4 REMARK 465 SER F 5 REMARK 465 ALA F 6 REMARK 465 VAL F 86 REMARK 465 GLU F 87 REMARK 465 ARG F 88 REMARK 465 LEU F 89 REMARK 465 VAL F 90 REMARK 465 SER F 91 REMARK 465 GLY F 92 REMARK 465 GLY F 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 ILE C 114 CG1 CG2 CD1 REMARK 470 GLN D 52 CG CD OE1 NE2 REMARK 470 LYS D 53 CG CD CE NZ REMARK 470 GLN D 79 CG CD OE1 NE2 REMARK 470 GLU F 81 CG CD OE1 OE2 REMARK 470 GLU F 83 CG CD OE1 OE2 REMARK 470 THR F 84 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 -76.20 -85.31 REMARK 500 ALA A 53 88.26 55.70 REMARK 500 LEU A 55 158.12 167.75 REMARK 500 LYS A 64 38.34 -75.61 REMARK 500 ARG A 65 -59.48 -149.07 REMARK 500 TYR A 66 43.96 -96.38 REMARK 500 THR A 88 -71.47 -88.77 REMARK 500 LYS A 90 -169.76 -67.10 REMARK 500 ILE A 91 -69.95 -141.24 REMARK 500 ALA A 111 70.20 56.46 REMARK 500 LEU B 13 41.07 -103.18 REMARK 500 THR B 89 -96.60 -103.73 REMARK 500 LEU C 13 40.31 -102.50 REMARK 500 VAL C 16 179.51 69.61 REMARK 500 THR C 89 -96.83 -104.59 REMARK 500 THR C 93 -166.86 -167.73 REMARK 500 THR D 89 -97.06 -104.67 REMARK 500 THR D 93 -168.76 -165.75 REMARK 500 ARG E 7 -83.49 -82.90 REMARK 500 THR F 8 168.15 -47.62 REMARK 500 GLU F 83 -95.10 -84.20 REMARK 500 THR F 84 2.68 -68.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MDX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAZF IN COMPLEX WITH RNA DBREF 4ME7 A 2 115 UNP P96622 ENDOA_BACSU 2 116 DBREF 4ME7 B 2 116 UNP P96622 ENDOA_BACSU 2 116 DBREF 4ME7 C 2 116 UNP P96622 ENDOA_BACSU 2 116 DBREF 4ME7 D 2 116 UNP P96622 ENDOA_BACSU 2 116 DBREF 4ME7 E 2 93 UNP P96621 ENDAI_BACSU 2 93 DBREF 4ME7 F 2 93 UNP P96621 ENDAI_BACSU 2 93 SEQADV 4ME7 MSE A 1 UNP P96622 EXPRESSION TAG SEQADV 4ME7 MSE B 1 UNP P96622 EXPRESSION TAG SEQADV 4ME7 MSE C 1 UNP P96622 EXPRESSION TAG SEQADV 4ME7 MSE D 1 UNP P96622 EXPRESSION TAG SEQADV 4ME7 SER E 0 UNP P96621 EXPRESSION TAG SEQADV 4ME7 MSE E 1 UNP P96621 EXPRESSION TAG SEQADV 4ME7 SER F 0 UNP P96621 EXPRESSION TAG SEQADV 4ME7 MSE F 1 UNP P96621 EXPRESSION TAG SEQRES 1 A 116 MSE ILE VAL LYS ARG GLY ASP VAL TYR PHE ALA ASP LEU SEQRES 2 A 116 SER PRO VAL VAL GLY SER GLU GLN GLY GLY VAL ARG PRO SEQRES 3 A 116 VAL LEU VAL ILE GLN ASN ASP ILE GLY ASN ARG PHE SER SEQRES 4 A 116 PRO THR ALA ILE VAL ALA ALA ILE THR ALA GLN ILE GLN SEQRES 5 A 116 LYS ALA LYS LEU PRO THR HIS VAL GLU ILE ASP ALA LYS SEQRES 6 A 116 ARG TYR GLY PHE GLU ARG ASP SER VAL ILE LEU LEU GLU SEQRES 7 A 116 GLN ILE ARG THR ILE ASP LYS GLN ARG LEU THR ASP LYS SEQRES 8 A 116 ILE THR HIS LEU ASP ASP GLU MSE MSE ASP LYS VAL ASP SEQRES 9 A 116 GLU ALA LEU GLN ILE SER LEU ALA LEU ILE ASP PHE SEQRES 1 B 116 MSE ILE VAL LYS ARG GLY ASP VAL TYR PHE ALA ASP LEU SEQRES 2 B 116 SER PRO VAL VAL GLY SER GLU GLN GLY GLY VAL ARG PRO SEQRES 3 B 116 VAL LEU VAL ILE GLN ASN ASP ILE GLY ASN ARG PHE SER SEQRES 4 B 116 PRO THR ALA ILE VAL ALA ALA ILE THR ALA GLN ILE GLN SEQRES 5 B 116 LYS ALA LYS LEU PRO THR HIS VAL GLU ILE ASP ALA LYS SEQRES 6 B 116 ARG TYR GLY PHE GLU ARG ASP SER VAL ILE LEU LEU GLU SEQRES 7 B 116 GLN ILE ARG THR ILE ASP LYS GLN ARG LEU THR ASP LYS SEQRES 8 B 116 ILE THR HIS LEU ASP ASP GLU MSE MSE ASP LYS VAL ASP SEQRES 9 B 116 GLU ALA LEU GLN ILE SER LEU ALA LEU ILE ASP PHE SEQRES 1 C 116 MSE ILE VAL LYS ARG GLY ASP VAL TYR PHE ALA ASP LEU SEQRES 2 C 116 SER PRO VAL VAL GLY SER GLU GLN GLY GLY VAL ARG PRO SEQRES 3 C 116 VAL LEU VAL ILE GLN ASN ASP ILE GLY ASN ARG PHE SER SEQRES 4 C 116 PRO THR ALA ILE VAL ALA ALA ILE THR ALA GLN ILE GLN SEQRES 5 C 116 LYS ALA LYS LEU PRO THR HIS VAL GLU ILE ASP ALA LYS SEQRES 6 C 116 ARG TYR GLY PHE GLU ARG ASP SER VAL ILE LEU LEU GLU SEQRES 7 C 116 GLN ILE ARG THR ILE ASP LYS GLN ARG LEU THR ASP LYS SEQRES 8 C 116 ILE THR HIS LEU ASP ASP GLU MSE MSE ASP LYS VAL ASP SEQRES 9 C 116 GLU ALA LEU GLN ILE SER LEU ALA LEU ILE ASP PHE SEQRES 1 D 116 MSE ILE VAL LYS ARG GLY ASP VAL TYR PHE ALA ASP LEU SEQRES 2 D 116 SER PRO VAL VAL GLY SER GLU GLN GLY GLY VAL ARG PRO SEQRES 3 D 116 VAL LEU VAL ILE GLN ASN ASP ILE GLY ASN ARG PHE SER SEQRES 4 D 116 PRO THR ALA ILE VAL ALA ALA ILE THR ALA GLN ILE GLN SEQRES 5 D 116 LYS ALA LYS LEU PRO THR HIS VAL GLU ILE ASP ALA LYS SEQRES 6 D 116 ARG TYR GLY PHE GLU ARG ASP SER VAL ILE LEU LEU GLU SEQRES 7 D 116 GLN ILE ARG THR ILE ASP LYS GLN ARG LEU THR ASP LYS SEQRES 8 D 116 ILE THR HIS LEU ASP ASP GLU MSE MSE ASP LYS VAL ASP SEQRES 9 D 116 GLU ALA LEU GLN ILE SER LEU ALA LEU ILE ASP PHE SEQRES 1 E 94 SER MSE SER GLU SER SER ALA ARG THR GLU MSE LYS ILE SEQRES 2 E 94 SER LEU PRO GLU ASN LEU VAL ALA GLU LEU ASP GLY VAL SEQRES 3 E 94 ALA MSE ARG GLU LYS ARG SER ARG ASN GLU LEU ILE SER SEQRES 4 E 94 GLN ALA VAL ARG ALA TYR VAL SER GLU ARG THR THR ARG SEQRES 5 E 94 HIS ASN ARG ASP LEU MSE ARG ARG GLY TYR MSE GLU MSE SEQRES 6 E 94 ALA LYS ILE ASN LEU ASN ILE SER SER GLU ALA HIS PHE SEQRES 7 E 94 ALA GLU CYS GLU ALA GLU THR THR VAL GLU ARG LEU VAL SEQRES 8 E 94 SER GLY GLY SEQRES 1 F 94 SER MSE SER GLU SER SER ALA ARG THR GLU MSE LYS ILE SEQRES 2 F 94 SER LEU PRO GLU ASN LEU VAL ALA GLU LEU ASP GLY VAL SEQRES 3 F 94 ALA MSE ARG GLU LYS ARG SER ARG ASN GLU LEU ILE SER SEQRES 4 F 94 GLN ALA VAL ARG ALA TYR VAL SER GLU ARG THR THR ARG SEQRES 5 F 94 HIS ASN ARG ASP LEU MSE ARG ARG GLY TYR MSE GLU MSE SEQRES 6 F 94 ALA LYS ILE ASN LEU ASN ILE SER SER GLU ALA HIS PHE SEQRES 7 F 94 ALA GLU CYS GLU ALA GLU THR THR VAL GLU ARG LEU VAL SEQRES 8 F 94 SER GLY GLY MODRES 4ME7 MSE A 1 MET SELENOMETHIONINE MODRES 4ME7 MSE A 98 MET SELENOMETHIONINE MODRES 4ME7 MSE A 99 MET SELENOMETHIONINE MODRES 4ME7 MSE B 1 MET SELENOMETHIONINE MODRES 4ME7 MSE B 99 MET SELENOMETHIONINE MODRES 4ME7 MSE B 100 MET SELENOMETHIONINE MODRES 4ME7 MSE C 1 MET SELENOMETHIONINE MODRES 4ME7 MSE C 99 MET SELENOMETHIONINE MODRES 4ME7 MSE C 100 MET SELENOMETHIONINE MODRES 4ME7 MSE D 1 MET SELENOMETHIONINE MODRES 4ME7 MSE D 99 MET SELENOMETHIONINE MODRES 4ME7 MSE D 100 MET SELENOMETHIONINE MODRES 4ME7 MSE E 10 MET SELENOMETHIONINE MODRES 4ME7 MSE E 27 MET SELENOMETHIONINE MODRES 4ME7 MSE E 57 MET SELENOMETHIONINE MODRES 4ME7 MSE E 62 MET SELENOMETHIONINE MODRES 4ME7 MSE E 64 MET SELENOMETHIONINE MODRES 4ME7 MSE F 10 MET SELENOMETHIONINE MODRES 4ME7 MSE F 27 MET SELENOMETHIONINE MODRES 4ME7 MSE F 57 MET SELENOMETHIONINE MODRES 4ME7 MSE F 62 MET SELENOMETHIONINE MODRES 4ME7 MSE F 64 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 98 8 HET MSE A 99 8 HET MSE B 1 8 HET MSE B 99 8 HET MSE B 100 8 HET MSE C 1 8 HET MSE C 99 8 HET MSE C 100 8 HET MSE D 1 8 HET MSE D 99 8 HET MSE D 100 8 HET MSE E 10 8 HET MSE E 27 8 HET MSE E 57 8 HET MSE E 62 8 HET MSE E 64 8 HET MSE F 10 8 HET MSE F 27 8 HET MSE F 57 8 HET MSE F 62 8 HET MSE F 64 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 7 HOH *30(H2 O) HELIX 1 1 ASN A 31 SER A 38 1 8 HELIX 2 2 GLN A 85 LEU A 87 5 3 HELIX 3 3 ASP A 95 ALA A 111 1 17 HELIX 4 4 ILE B 34 SER B 39 1 6 HELIX 5 5 ASP B 96 LEU B 111 1 16 HELIX 6 6 ILE C 34 SER C 39 1 6 HELIX 7 7 ASP C 96 LEU C 111 1 16 HELIX 8 8 ILE D 34 SER D 39 1 6 HELIX 9 9 ASP D 96 LEU D 111 1 16 HELIX 10 10 PRO E 15 LYS E 30 1 16 HELIX 11 11 SER E 32 ALA E 75 1 44 HELIX 12 12 ALA E 75 ALA E 82 1 8 HELIX 13 13 PRO F 15 LYS F 30 1 16 HELIX 14 14 SER F 32 ALA F 75 1 44 HELIX 15 15 ALA F 75 ALA F 82 1 8 SHEET 1 A 6 HIS A 58 ILE A 61 0 SHEET 2 A 6 SER A 72 ASP A 83 -1 O ILE A 74 N VAL A 59 SHEET 3 A 6 THR A 40 THR A 47 -1 N ALA A 45 O GLN A 78 SHEET 4 A 6 PRO A 25 VAL A 28 -1 N LEU A 27 O ALA A 44 SHEET 5 A 6 ASP A 7 PHE A 10 -1 N ASP A 7 O VAL A 28 SHEET 6 A 6 THR A 92 HIS A 93 -1 O THR A 92 N VAL A 8 SHEET 1 B 6 HIS B 59 ILE B 62 0 SHEET 2 B 6 SER B 73 ASP B 84 -1 O ILE B 75 N VAL B 60 SHEET 3 B 6 THR B 41 THR B 48 -1 N ALA B 42 O ILE B 83 SHEET 4 B 6 VAL B 24 VAL B 29 -1 N LEU B 28 O ALA B 45 SHEET 5 B 6 ASP B 7 ASP B 12 -1 N ASP B 7 O VAL B 29 SHEET 6 B 6 LEU B 88 HIS B 94 -1 O ASP B 90 N PHE B 10 SHEET 1 C 6 HIS C 59 ILE C 62 0 SHEET 2 C 6 SER C 73 ASP C 84 -1 O ILE C 75 N VAL C 60 SHEET 3 C 6 THR C 41 THR C 48 -1 N ALA C 42 O ILE C 83 SHEET 4 C 6 ARG C 25 VAL C 29 -1 N LEU C 28 O ALA C 45 SHEET 5 C 6 ASP C 7 ALA C 11 -1 N ASP C 7 O VAL C 29 SHEET 6 C 6 LEU C 88 HIS C 94 -1 O THR C 93 N VAL C 8 SHEET 1 D 6 HIS D 59 ILE D 62 0 SHEET 2 D 6 SER D 73 ASP D 84 -1 O ILE D 75 N VAL D 60 SHEET 3 D 6 THR D 41 THR D 48 -1 N ALA D 42 O ILE D 83 SHEET 4 D 6 ARG D 25 VAL D 29 -1 N LEU D 28 O ALA D 45 SHEET 5 D 6 ASP D 7 ALA D 11 -1 N ASP D 7 O VAL D 29 SHEET 6 D 6 LEU D 88 HIS D 94 -1 O THR D 93 N VAL D 8 SHEET 1 E 2 MSE E 10 SER E 13 0 SHEET 2 E 2 GLU F 9 ILE F 12 -1 O MSE F 10 N ILE E 12 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N ASP A 100 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C GLU B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N ASP B 101 1555 1555 1.32 LINK C MSE C 1 N ILE C 2 1555 1555 1.33 LINK C GLU C 98 N MSE C 99 1555 1555 1.33 LINK C MSE C 99 N MSE C 100 1555 1555 1.33 LINK C MSE C 100 N ASP C 101 1555 1555 1.32 LINK C MSE D 1 N ILE D 2 1555 1555 1.33 LINK C GLU D 98 N MSE D 99 1555 1555 1.33 LINK C MSE D 99 N MSE D 100 1555 1555 1.33 LINK C MSE D 100 N ASP D 101 1555 1555 1.33 LINK C GLU E 9 N MSE E 10 1555 1555 1.32 LINK C MSE E 10 N LYS E 11 1555 1555 1.32 LINK C ALA E 26 N MSE E 27 1555 1555 1.32 LINK C MSE E 27 N ARG E 28 1555 1555 1.33 LINK C LEU E 56 N MSE E 57 1555 1555 1.33 LINK C MSE E 57 N ARG E 58 1555 1555 1.33 LINK C TYR E 61 N MSE E 62 1555 1555 1.33 LINK C MSE E 62 N GLU E 63 1555 1555 1.33 LINK C GLU E 63 N MSE E 64 1555 1555 1.33 LINK C MSE E 64 N ALA E 65 1555 1555 1.33 LINK C GLU F 9 N MSE F 10 1555 1555 1.32 LINK C MSE F 10 N LYS F 11 1555 1555 1.33 LINK C ALA F 26 N MSE F 27 1555 1555 1.33 LINK C MSE F 27 N ARG F 28 1555 1555 1.33 LINK C LEU F 56 N MSE F 57 1555 1555 1.33 LINK C MSE F 57 N ARG F 58 1555 1555 1.33 LINK C TYR F 61 N MSE F 62 1555 1555 1.33 LINK C MSE F 62 N GLU F 63 1555 1555 1.33 LINK C GLU F 63 N MSE F 64 1555 1555 1.33 LINK C MSE F 64 N ALA F 65 1555 1555 1.33 CRYST1 81.503 91.618 104.334 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012269 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009585 0.00000 MTRIX1 1 0.985198 -0.116141 0.126076 -47.30430 1 MTRIX2 1 -0.135202 -0.074343 0.988025 41.19410 1 MTRIX3 1 -0.105378 -0.990447 -0.088945 2.95518 1 MTRIX1 2 -0.999861 -0.002911 -0.016397 -40.90370 1 MTRIX2 2 0.000494 -0.989356 0.145511 45.14270 1 MTRIX3 2 -0.016646 0.145483 0.989221 -3.10509 1 MTRIX1 3 -0.999882 -0.006747 -0.013781 -40.61040 1 MTRIX2 3 0.004286 -0.985201 0.171352 45.61100 1 MTRIX3 3 -0.014733 0.171273 0.985113 -4.18004 1 HETATM 1 N MSE A 1 -28.229 3.803 -31.497 1.00131.74 N ANISOU 1 N MSE A 1 16672 17252 16130 353 251 -2548 N HETATM 2 CA MSE A 1 -27.269 4.035 -32.570 1.00133.16 C ANISOU 2 CA MSE A 1 16763 17670 16162 340 322 -2677 C HETATM 3 C MSE A 1 -26.798 5.486 -32.609 1.00132.44 C ANISOU 3 C MSE A 1 16702 17750 15868 384 280 -2398 C HETATM 4 O MSE A 1 -25.696 5.805 -32.171 1.00132.16 O ANISOU 4 O MSE A 1 16692 17601 15922 467 296 -2296 O HETATM 5 CB MSE A 1 -27.867 3.635 -33.925 1.00133.93 C ANISOU 5 CB MSE A 1 16750 18082 16057 210 367 -2949 C HETATM 6 CG MSE A 1 -29.389 3.775 -34.012 1.00133.84 C ANISOU 6 CG MSE A 1 16752 18187 15913 127 292 -2891 C HETATM 7 SE MSE A 1 -30.100 3.888 -35.837 1.00136.27 SE ANISOU 7 SE MSE A 1 16912 19041 15824 -56 310 -3102 SE HETATM 8 CE MSE A 1 -29.264 5.560 -36.395 1.00135.68 C ANISOU 8 CE MSE A 1 16814 19289 15450 -24 283 -2803 C