data_4MED # _entry.id 4MED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.339 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MED RCSB RCSB081804 WWPDB D_1000081804 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2021-03-17 _pdbx_database_PDB_obs_spr.pdb_id 6KZI _pdbx_database_PDB_obs_spr.replace_pdb_id 4MED _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4IAA _pdbx_database_related.details 'The same protein complexed with thioridazine' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4MED _pdbx_database_status.recvd_initial_deposition_date 2013-08-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, W.' 1 'Wan, X.' 2 'Li, W.' 3 'Xie, Y.' 4 'Huang, N.' 5 # _citation.id primary _citation.title 'Crystal structure of Ser/Thr kinase Pim1 in complex with thioridazine derivatives' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Wan, X.' 2 ? primary 'Li, W.' 3 ? primary 'Xie, Y.' 4 ? primary 'Huang, N.' 5 ? # _cell.entry_id 4MED _cell.length_a 98.925 _cell.length_b 98.925 _cell.length_c 80.830 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MED _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase pim-1' 33292.719 1 2.7.11.1 ? 'UNP residues 120-404' ? 2 non-polymer syn '4-(2-chloro-10H-phenoxazin-10-yl)-N,N-diethylbutan-1-amine' 344.878 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPHMKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI RLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKL IDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS (SEP)ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPHMKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI RLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKL IDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQ HLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 HIS n 1 4 MET n 1 5 LYS n 1 6 GLU n 1 7 LYS n 1 8 GLU n 1 9 PRO n 1 10 LEU n 1 11 GLU n 1 12 SER n 1 13 GLN n 1 14 TYR n 1 15 GLN n 1 16 VAL n 1 17 GLY n 1 18 PRO n 1 19 LEU n 1 20 LEU n 1 21 GLY n 1 22 SER n 1 23 GLY n 1 24 GLY n 1 25 PHE n 1 26 GLY n 1 27 SER n 1 28 VAL n 1 29 TYR n 1 30 SER n 1 31 GLY n 1 32 ILE n 1 33 ARG n 1 34 VAL n 1 35 SER n 1 36 ASP n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 VAL n 1 41 ALA n 1 42 ILE n 1 43 LYS n 1 44 HIS n 1 45 VAL n 1 46 GLU n 1 47 LYS n 1 48 ASP n 1 49 ARG n 1 50 ILE n 1 51 SER n 1 52 ASP n 1 53 TRP n 1 54 GLY n 1 55 GLU n 1 56 LEU n 1 57 PRO n 1 58 ASN n 1 59 GLY n 1 60 THR n 1 61 ARG n 1 62 VAL n 1 63 PRO n 1 64 MET n 1 65 GLU n 1 66 VAL n 1 67 VAL n 1 68 LEU n 1 69 LEU n 1 70 LYS n 1 71 LYS n 1 72 VAL n 1 73 SER n 1 74 SER n 1 75 GLY n 1 76 PHE n 1 77 SER n 1 78 GLY n 1 79 VAL n 1 80 ILE n 1 81 ARG n 1 82 LEU n 1 83 LEU n 1 84 ASP n 1 85 TRP n 1 86 PHE n 1 87 GLU n 1 88 ARG n 1 89 PRO n 1 90 ASP n 1 91 SER n 1 92 PHE n 1 93 VAL n 1 94 LEU n 1 95 ILE n 1 96 LEU n 1 97 GLU n 1 98 ARG n 1 99 PRO n 1 100 GLU n 1 101 PRO n 1 102 VAL n 1 103 GLN n 1 104 ASP n 1 105 LEU n 1 106 PHE n 1 107 ASP n 1 108 PHE n 1 109 ILE n 1 110 THR n 1 111 GLU n 1 112 ARG n 1 113 GLY n 1 114 ALA n 1 115 LEU n 1 116 GLN n 1 117 GLU n 1 118 GLU n 1 119 LEU n 1 120 ALA n 1 121 ARG n 1 122 SER n 1 123 PHE n 1 124 PHE n 1 125 TRP n 1 126 GLN n 1 127 VAL n 1 128 LEU n 1 129 GLU n 1 130 ALA n 1 131 VAL n 1 132 ARG n 1 133 HIS n 1 134 CYS n 1 135 HIS n 1 136 ASN n 1 137 CYS n 1 138 GLY n 1 139 VAL n 1 140 LEU n 1 141 HIS n 1 142 ARG n 1 143 ASP n 1 144 ILE n 1 145 LYS n 1 146 ASP n 1 147 GLU n 1 148 ASN n 1 149 ILE n 1 150 LEU n 1 151 ILE n 1 152 ASP n 1 153 LEU n 1 154 ASN n 1 155 ARG n 1 156 GLY n 1 157 GLU n 1 158 LEU n 1 159 LYS n 1 160 LEU n 1 161 ILE n 1 162 ASP n 1 163 PHE n 1 164 GLY n 1 165 SER n 1 166 GLY n 1 167 ALA n 1 168 LEU n 1 169 LEU n 1 170 LYS n 1 171 ASP n 1 172 THR n 1 173 VAL n 1 174 TYR n 1 175 THR n 1 176 ASP n 1 177 PHE n 1 178 ASP n 1 179 GLY n 1 180 THR n 1 181 ARG n 1 182 VAL n 1 183 TYR n 1 184 SER n 1 185 PRO n 1 186 PRO n 1 187 GLU n 1 188 TRP n 1 189 ILE n 1 190 ARG n 1 191 TYR n 1 192 HIS n 1 193 ARG n 1 194 TYR n 1 195 HIS n 1 196 GLY n 1 197 ARG n 1 198 SER n 1 199 ALA n 1 200 ALA n 1 201 VAL n 1 202 TRP n 1 203 SER n 1 204 LEU n 1 205 GLY n 1 206 ILE n 1 207 LEU n 1 208 LEU n 1 209 TYR n 1 210 ASP n 1 211 MET n 1 212 VAL n 1 213 CYS n 1 214 GLY n 1 215 ASP n 1 216 ILE n 1 217 PRO n 1 218 PHE n 1 219 GLU n 1 220 HIS n 1 221 ASP n 1 222 GLU n 1 223 GLU n 1 224 ILE n 1 225 ILE n 1 226 ARG n 1 227 GLY n 1 228 GLN n 1 229 VAL n 1 230 PHE n 1 231 PHE n 1 232 ARG n 1 233 GLN n 1 234 ARG n 1 235 VAL n 1 236 SER n 1 237 SEP n 1 238 GLU n 1 239 CYS n 1 240 GLN n 1 241 HIS n 1 242 LEU n 1 243 ILE n 1 244 ARG n 1 245 TRP n 1 246 CYS n 1 247 LEU n 1 248 ALA n 1 249 LEU n 1 250 ARG n 1 251 PRO n 1 252 SER n 1 253 ASP n 1 254 ARG n 1 255 PRO n 1 256 THR n 1 257 PHE n 1 258 GLU n 1 259 GLU n 1 260 ILE n 1 261 GLN n 1 262 ASN n 1 263 HIS n 1 264 PRO n 1 265 TRP n 1 266 MET n 1 267 GLN n 1 268 ASP n 1 269 VAL n 1 270 LEU n 1 271 LEU n 1 272 PRO n 1 273 GLN n 1 274 GLU n 1 275 THR n 1 276 ALA n 1 277 GLU n 1 278 ILE n 1 279 HIS n 1 280 LEU n 1 281 HIS n 1 282 SER n 1 283 LEU n 1 284 SER n 1 285 PRO n 1 286 GLY n 1 287 PRO n 1 288 SER n 1 289 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIM1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Star (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PIM1_HUMAN _struct_ref.pdbx_db_accession P11309 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK ; _struct_ref.pdbx_align_begin 120 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MED _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 289 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11309 _struct_ref_seq.db_align_beg 120 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 404 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 29 _struct_ref_seq.pdbx_auth_seq_align_end 313 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MED GLY A 1 ? UNP P11309 ? ? 'expression tag' 25 1 1 4MED PRO A 2 ? UNP P11309 ? ? 'expression tag' 26 2 1 4MED HIS A 3 ? UNP P11309 ? ? 'expression tag' 27 3 1 4MED MET A 4 ? UNP P11309 ? ? 'expression tag' 28 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RTX non-polymer . '4-(2-chloro-10H-phenoxazin-10-yl)-N,N-diethylbutan-1-amine' 10-DEBC 'C20 H25 Cl N2 O' 344.878 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MED _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_percent_sol 64.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.4M potassium sodium tartrate tetrahydrate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 291.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2012-10-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4MED _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.67 _reflns.d_resolution_high 2.8 _reflns.number_obs 10591 _reflns.number_all 11198 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4MED _refine.ls_number_reflns_obs 10591 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.67 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.18137 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17830 _refine.ls_R_factor_R_free 0.24249 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 528 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 52.614 _refine.aniso_B[1][1] -0.00 _refine.aniso_B[2][2] -0.00 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.597 _refine.pdbx_overall_ESU_R_Free 0.318 _refine.overall_SU_ML 0.222 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.845 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2252 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 19.67 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.015 0.019 ? 2303 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.004 0.020 ? 2167 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.866 1.960 ? 3124 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.996 3.003 ? 4972 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.659 5.000 ? 270 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36.405 23.136 ? 118 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 18.103 15.000 ? 379 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.671 15.000 ? 21 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.099 0.200 ? 330 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.021 ? 2587 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 566 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.801 _refine_ls_shell.d_res_low 2.872 _refine_ls_shell.number_reflns_R_work 766 _refine_ls_shell.R_factor_R_work 0.370 _refine_ls_shell.percent_reflns_obs 98.38 _refine_ls_shell.R_factor_R_free 0.379 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 25 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4MED _struct.title 'Crystal structure of Ser/Thr kinase Pim1 in complex with thioridazine derivatives' _struct.pdbx_descriptor 'Serine/threonine-protein kinase pim-1 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MED _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' _struct_keywords.text 'Protein-ligand complex, Kinase, Oncogene, ATP binding, Phosphorylation, Nucleus, TRANSFERASE-TRANSFERASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 9 ? GLN A 13 ? PRO A 33 GLN A 37 1 ? 5 HELX_P HELX_P2 2 ASP A 48 ? ILE A 50 ? ASP A 72 ILE A 74 5 ? 3 HELX_P HELX_P3 3 MET A 64 ? SER A 73 ? MET A 88 SER A 97 1 ? 10 HELX_P HELX_P4 4 LEU A 105 ? GLY A 113 ? LEU A 129 GLY A 137 1 ? 9 HELX_P HELX_P5 5 GLN A 116 ? CYS A 137 ? GLN A 140 CYS A 161 1 ? 22 HELX_P HELX_P6 6 LYS A 145 ? GLU A 147 ? LYS A 169 GLU A 171 5 ? 3 HELX_P HELX_P7 7 ASP A 162 ? GLY A 166 ? ASP A 186 GLY A 190 5 ? 5 HELX_P HELX_P8 8 THR A 180 ? SER A 184 ? THR A 204 SER A 208 5 ? 5 HELX_P HELX_P9 9 PRO A 185 ? HIS A 192 ? PRO A 209 HIS A 216 1 ? 8 HELX_P HELX_P10 10 HIS A 195 ? GLY A 214 ? HIS A 219 GLY A 238 1 ? 20 HELX_P HELX_P11 11 HIS A 220 ? GLY A 227 ? HIS A 244 GLY A 251 1 ? 8 HELX_P HELX_P12 12 SER A 236 ? LEU A 247 ? SER A 260 LEU A 271 1 ? 12 HELX_P HELX_P13 13 ARG A 250 ? ARG A 254 ? ARG A 274 ARG A 278 5 ? 5 HELX_P HELX_P14 14 THR A 256 ? ASN A 262 ? THR A 280 ASN A 286 1 ? 7 HELX_P HELX_P15 15 HIS A 263 ? GLN A 267 ? HIS A 287 GLN A 291 5 ? 5 HELX_P HELX_P16 16 LEU A 271 ? LEU A 280 ? LEU A 295 LEU A 304 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 236 C ? ? ? 1_555 A SEP 237 N ? ? A SER 260 A SEP 261 1_555 ? ? ? ? ? ? ? 1.295 ? ? covale2 covale both ? A SEP 237 C ? ? ? 1_555 A GLU 238 N ? ? A SEP 261 A GLU 262 1_555 ? ? ? ? ? ? ? 1.319 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 100 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 124 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 101 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 125 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 3 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 14 ? GLY A 23 ? TYR A 38 GLY A 47 A 2 GLY A 26 ? ARG A 33 ? GLY A 50 ARG A 57 A 3 PRO A 39 ? GLU A 46 ? PRO A 63 GLU A 70 A 4 SER A 91 ? GLU A 97 ? SER A 115 GLU A 121 A 5 LEU A 82 ? GLU A 87 ? LEU A 106 GLU A 111 B 1 TRP A 53 ? GLU A 55 ? TRP A 77 GLU A 79 B 2 ARG A 61 ? PRO A 63 ? ARG A 85 PRO A 87 C 1 VAL A 102 ? ASP A 104 ? VAL A 126 ASP A 128 C 2 ILE A 149 ? ASP A 152 ? ILE A 173 ASP A 176 C 3 GLU A 157 ? LEU A 160 ? GLU A 181 LEU A 184 D 1 VAL A 139 ? LEU A 140 ? VAL A 163 LEU A 164 D 2 ALA A 167 ? LEU A 168 ? ALA A 191 LEU A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 15 ? N GLN A 39 O ILE A 32 ? O ILE A 56 A 2 3 N TYR A 29 ? N TYR A 53 O ILE A 42 ? O ILE A 66 A 3 4 N VAL A 45 ? N VAL A 69 O PHE A 92 ? O PHE A 116 A 4 5 O ILE A 95 ? O ILE A 119 N LEU A 83 ? N LEU A 107 B 1 2 N GLY A 54 ? N GLY A 78 O VAL A 62 ? O VAL A 86 C 1 2 N GLN A 103 ? N GLN A 127 O ILE A 151 ? O ILE A 175 C 2 3 N ASP A 152 ? N ASP A 176 O GLU A 157 ? O GLU A 181 D 1 2 N LEU A 140 ? N LEU A 164 O ALA A 167 ? O ALA A 191 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id RTX _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE RTX A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PHE A 25 ? PHE A 49 . ? 1_555 ? 2 AC1 8 ALA A 41 ? ALA A 65 . ? 1_555 ? 3 AC1 8 GLU A 97 ? GLU A 121 . ? 1_555 ? 4 AC1 8 ASP A 104 ? ASP A 128 . ? 1_555 ? 5 AC1 8 ASP A 107 ? ASP A 131 . ? 1_555 ? 6 AC1 8 LEU A 150 ? LEU A 174 . ? 1_555 ? 7 AC1 8 ILE A 161 ? ILE A 185 . ? 1_555 ? 8 AC1 8 ASP A 162 ? ASP A 186 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MED _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MED _atom_sites.fract_transf_matrix[1][1] 0.010109 _atom_sites.fract_transf_matrix[1][2] 0.005836 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011672 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012372 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 ? ? ? A . n A 1 2 PRO 2 26 ? ? ? A . n A 1 3 HIS 3 27 ? ? ? A . n A 1 4 MET 4 28 ? ? ? A . n A 1 5 LYS 5 29 ? ? ? A . n A 1 6 GLU 6 30 ? ? ? A . n A 1 7 LYS 7 31 ? ? ? A . n A 1 8 GLU 8 32 ? ? ? A . n A 1 9 PRO 9 33 33 PRO PRO A . n A 1 10 LEU 10 34 34 LEU LEU A . n A 1 11 GLU 11 35 35 GLU GLU A . n A 1 12 SER 12 36 36 SER SER A . n A 1 13 GLN 13 37 37 GLN GLN A . n A 1 14 TYR 14 38 38 TYR TYR A . n A 1 15 GLN 15 39 39 GLN GLN A . n A 1 16 VAL 16 40 40 VAL VAL A . n A 1 17 GLY 17 41 41 GLY GLY A . n A 1 18 PRO 18 42 42 PRO PRO A . n A 1 19 LEU 19 43 43 LEU LEU A . n A 1 20 LEU 20 44 44 LEU LEU A . n A 1 21 GLY 21 45 45 GLY GLY A . n A 1 22 SER 22 46 46 SER SER A . n A 1 23 GLY 23 47 47 GLY GLY A . n A 1 24 GLY 24 48 48 GLY GLY A . n A 1 25 PHE 25 49 49 PHE PHE A . n A 1 26 GLY 26 50 50 GLY GLY A . n A 1 27 SER 27 51 51 SER SER A . n A 1 28 VAL 28 52 52 VAL VAL A . n A 1 29 TYR 29 53 53 TYR TYR A . n A 1 30 SER 30 54 54 SER SER A . n A 1 31 GLY 31 55 55 GLY GLY A . n A 1 32 ILE 32 56 56 ILE ILE A . n A 1 33 ARG 33 57 57 ARG ARG A . n A 1 34 VAL 34 58 58 VAL VAL A . n A 1 35 SER 35 59 59 SER SER A . n A 1 36 ASP 36 60 60 ASP ASP A . n A 1 37 ASN 37 61 61 ASN ASN A . n A 1 38 LEU 38 62 62 LEU LEU A . n A 1 39 PRO 39 63 63 PRO PRO A . n A 1 40 VAL 40 64 64 VAL VAL A . n A 1 41 ALA 41 65 65 ALA ALA A . n A 1 42 ILE 42 66 66 ILE ILE A . n A 1 43 LYS 43 67 67 LYS LYS A . n A 1 44 HIS 44 68 68 HIS HIS A . n A 1 45 VAL 45 69 69 VAL VAL A . n A 1 46 GLU 46 70 70 GLU GLU A . n A 1 47 LYS 47 71 71 LYS LYS A . n A 1 48 ASP 48 72 72 ASP ASP A . n A 1 49 ARG 49 73 73 ARG ARG A . n A 1 50 ILE 50 74 74 ILE ILE A . n A 1 51 SER 51 75 75 SER SER A . n A 1 52 ASP 52 76 76 ASP ASP A . n A 1 53 TRP 53 77 77 TRP TRP A . n A 1 54 GLY 54 78 78 GLY GLY A . n A 1 55 GLU 55 79 79 GLU GLU A . n A 1 56 LEU 56 80 80 LEU LEU A . n A 1 57 PRO 57 81 81 PRO PRO A . n A 1 58 ASN 58 82 82 ASN ASN A . n A 1 59 GLY 59 83 83 GLY GLY A . n A 1 60 THR 60 84 84 THR THR A . n A 1 61 ARG 61 85 85 ARG ARG A . n A 1 62 VAL 62 86 86 VAL VAL A . n A 1 63 PRO 63 87 87 PRO PRO A . n A 1 64 MET 64 88 88 MET MET A . n A 1 65 GLU 65 89 89 GLU GLU A . n A 1 66 VAL 66 90 90 VAL VAL A . n A 1 67 VAL 67 91 91 VAL VAL A . n A 1 68 LEU 68 92 92 LEU LEU A . n A 1 69 LEU 69 93 93 LEU LEU A . n A 1 70 LYS 70 94 94 LYS LYS A . n A 1 71 LYS 71 95 95 LYS LYS A . n A 1 72 VAL 72 96 96 VAL VAL A . n A 1 73 SER 73 97 97 SER SER A . n A 1 74 SER 74 98 98 SER SER A . n A 1 75 GLY 75 99 99 GLY GLY A . n A 1 76 PHE 76 100 100 PHE PHE A . n A 1 77 SER 77 101 101 SER SER A . n A 1 78 GLY 78 102 102 GLY GLY A . n A 1 79 VAL 79 103 103 VAL VAL A . n A 1 80 ILE 80 104 104 ILE ILE A . n A 1 81 ARG 81 105 105 ARG ARG A . n A 1 82 LEU 82 106 106 LEU LEU A . n A 1 83 LEU 83 107 107 LEU LEU A . n A 1 84 ASP 84 108 108 ASP ASP A . n A 1 85 TRP 85 109 109 TRP TRP A . n A 1 86 PHE 86 110 110 PHE PHE A . n A 1 87 GLU 87 111 111 GLU GLU A . n A 1 88 ARG 88 112 112 ARG ARG A . n A 1 89 PRO 89 113 113 PRO PRO A . n A 1 90 ASP 90 114 114 ASP ASP A . n A 1 91 SER 91 115 115 SER SER A . n A 1 92 PHE 92 116 116 PHE PHE A . n A 1 93 VAL 93 117 117 VAL VAL A . n A 1 94 LEU 94 118 118 LEU LEU A . n A 1 95 ILE 95 119 119 ILE ILE A . n A 1 96 LEU 96 120 120 LEU LEU A . n A 1 97 GLU 97 121 121 GLU GLU A . n A 1 98 ARG 98 122 122 ARG ARG A . n A 1 99 PRO 99 123 123 PRO PRO A . n A 1 100 GLU 100 124 124 GLU GLU A . n A 1 101 PRO 101 125 125 PRO PRO A . n A 1 102 VAL 102 126 126 VAL VAL A . n A 1 103 GLN 103 127 127 GLN GLN A . n A 1 104 ASP 104 128 128 ASP ASP A . n A 1 105 LEU 105 129 129 LEU LEU A . n A 1 106 PHE 106 130 130 PHE PHE A . n A 1 107 ASP 107 131 131 ASP ASP A . n A 1 108 PHE 108 132 132 PHE PHE A . n A 1 109 ILE 109 133 133 ILE ILE A . n A 1 110 THR 110 134 134 THR THR A . n A 1 111 GLU 111 135 135 GLU GLU A . n A 1 112 ARG 112 136 136 ARG ARG A . n A 1 113 GLY 113 137 137 GLY GLY A . n A 1 114 ALA 114 138 138 ALA ALA A . n A 1 115 LEU 115 139 139 LEU LEU A . n A 1 116 GLN 116 140 140 GLN GLN A . n A 1 117 GLU 117 141 141 GLU GLU A . n A 1 118 GLU 118 142 142 GLU GLU A . n A 1 119 LEU 119 143 143 LEU LEU A . n A 1 120 ALA 120 144 144 ALA ALA A . n A 1 121 ARG 121 145 145 ARG ARG A . n A 1 122 SER 122 146 146 SER SER A . n A 1 123 PHE 123 147 147 PHE PHE A . n A 1 124 PHE 124 148 148 PHE PHE A . n A 1 125 TRP 125 149 149 TRP TRP A . n A 1 126 GLN 126 150 150 GLN GLN A . n A 1 127 VAL 127 151 151 VAL VAL A . n A 1 128 LEU 128 152 152 LEU LEU A . n A 1 129 GLU 129 153 153 GLU GLU A . n A 1 130 ALA 130 154 154 ALA ALA A . n A 1 131 VAL 131 155 155 VAL VAL A . n A 1 132 ARG 132 156 156 ARG ARG A . n A 1 133 HIS 133 157 157 HIS HIS A . n A 1 134 CYS 134 158 158 CYS CYS A . n A 1 135 HIS 135 159 159 HIS HIS A . n A 1 136 ASN 136 160 160 ASN ASN A . n A 1 137 CYS 137 161 161 CYS CYS A . n A 1 138 GLY 138 162 162 GLY GLY A . n A 1 139 VAL 139 163 163 VAL VAL A . n A 1 140 LEU 140 164 164 LEU LEU A . n A 1 141 HIS 141 165 165 HIS HIS A . n A 1 142 ARG 142 166 166 ARG ARG A . n A 1 143 ASP 143 167 167 ASP ASP A . n A 1 144 ILE 144 168 168 ILE ILE A . n A 1 145 LYS 145 169 169 LYS LYS A . n A 1 146 ASP 146 170 170 ASP ASP A . n A 1 147 GLU 147 171 171 GLU GLU A . n A 1 148 ASN 148 172 172 ASN ASN A . n A 1 149 ILE 149 173 173 ILE ILE A . n A 1 150 LEU 150 174 174 LEU LEU A . n A 1 151 ILE 151 175 175 ILE ILE A . n A 1 152 ASP 152 176 176 ASP ASP A . n A 1 153 LEU 153 177 177 LEU LEU A . n A 1 154 ASN 154 178 178 ASN ASN A . n A 1 155 ARG 155 179 179 ARG ARG A . n A 1 156 GLY 156 180 180 GLY GLY A . n A 1 157 GLU 157 181 181 GLU GLU A . n A 1 158 LEU 158 182 182 LEU LEU A . n A 1 159 LYS 159 183 183 LYS LYS A . n A 1 160 LEU 160 184 184 LEU LEU A . n A 1 161 ILE 161 185 185 ILE ILE A . n A 1 162 ASP 162 186 186 ASP ASP A . n A 1 163 PHE 163 187 187 PHE PHE A . n A 1 164 GLY 164 188 188 GLY GLY A . n A 1 165 SER 165 189 189 SER SER A . n A 1 166 GLY 166 190 190 GLY GLY A . n A 1 167 ALA 167 191 191 ALA ALA A . n A 1 168 LEU 168 192 192 LEU LEU A . n A 1 169 LEU 169 193 193 LEU LEU A . n A 1 170 LYS 170 194 194 LYS LYS A . n A 1 171 ASP 171 195 195 ASP ASP A . n A 1 172 THR 172 196 196 THR THR A . n A 1 173 VAL 173 197 197 VAL VAL A . n A 1 174 TYR 174 198 198 TYR TYR A . n A 1 175 THR 175 199 199 THR THR A . n A 1 176 ASP 176 200 200 ASP ASP A . n A 1 177 PHE 177 201 201 PHE PHE A . n A 1 178 ASP 178 202 202 ASP ASP A . n A 1 179 GLY 179 203 203 GLY GLY A . n A 1 180 THR 180 204 204 THR THR A . n A 1 181 ARG 181 205 205 ARG ARG A . n A 1 182 VAL 182 206 206 VAL VAL A . n A 1 183 TYR 183 207 207 TYR TYR A . n A 1 184 SER 184 208 208 SER SER A . n A 1 185 PRO 185 209 209 PRO PRO A . n A 1 186 PRO 186 210 210 PRO PRO A . n A 1 187 GLU 187 211 211 GLU GLU A . n A 1 188 TRP 188 212 212 TRP TRP A . n A 1 189 ILE 189 213 213 ILE ILE A . n A 1 190 ARG 190 214 214 ARG ARG A . n A 1 191 TYR 191 215 215 TYR TYR A . n A 1 192 HIS 192 216 216 HIS HIS A . n A 1 193 ARG 193 217 217 ARG ARG A . n A 1 194 TYR 194 218 218 TYR TYR A . n A 1 195 HIS 195 219 219 HIS HIS A . n A 1 196 GLY 196 220 220 GLY GLY A . n A 1 197 ARG 197 221 221 ARG ARG A . n A 1 198 SER 198 222 222 SER SER A . n A 1 199 ALA 199 223 223 ALA ALA A . n A 1 200 ALA 200 224 224 ALA ALA A . n A 1 201 VAL 201 225 225 VAL VAL A . n A 1 202 TRP 202 226 226 TRP TRP A . n A 1 203 SER 203 227 227 SER SER A . n A 1 204 LEU 204 228 228 LEU LEU A . n A 1 205 GLY 205 229 229 GLY GLY A . n A 1 206 ILE 206 230 230 ILE ILE A . n A 1 207 LEU 207 231 231 LEU LEU A . n A 1 208 LEU 208 232 232 LEU LEU A . n A 1 209 TYR 209 233 233 TYR TYR A . n A 1 210 ASP 210 234 234 ASP ASP A . n A 1 211 MET 211 235 235 MET MET A . n A 1 212 VAL 212 236 236 VAL VAL A . n A 1 213 CYS 213 237 237 CYS CYS A . n A 1 214 GLY 214 238 238 GLY GLY A . n A 1 215 ASP 215 239 239 ASP ASP A . n A 1 216 ILE 216 240 240 ILE ILE A . n A 1 217 PRO 217 241 241 PRO PRO A . n A 1 218 PHE 218 242 242 PHE PHE A . n A 1 219 GLU 219 243 243 GLU GLU A . n A 1 220 HIS 220 244 244 HIS HIS A . n A 1 221 ASP 221 245 245 ASP ASP A . n A 1 222 GLU 222 246 246 GLU GLU A . n A 1 223 GLU 223 247 247 GLU GLU A . n A 1 224 ILE 224 248 248 ILE ILE A . n A 1 225 ILE 225 249 249 ILE ILE A . n A 1 226 ARG 226 250 250 ARG ARG A . n A 1 227 GLY 227 251 251 GLY GLY A . n A 1 228 GLN 228 252 252 GLN GLN A . n A 1 229 VAL 229 253 253 VAL VAL A . n A 1 230 PHE 230 254 254 PHE PHE A . n A 1 231 PHE 231 255 255 PHE PHE A . n A 1 232 ARG 232 256 256 ARG ARG A . n A 1 233 GLN 233 257 257 GLN GLN A . n A 1 234 ARG 234 258 258 ARG ARG A . n A 1 235 VAL 235 259 259 VAL VAL A . n A 1 236 SER 236 260 260 SER SER A . n A 1 237 SEP 237 261 261 SEP SEP A . n A 1 238 GLU 238 262 262 GLU GLU A . n A 1 239 CYS 239 263 263 CYS CYS A . n A 1 240 GLN 240 264 264 GLN GLN A . n A 1 241 HIS 241 265 265 HIS HIS A . n A 1 242 LEU 242 266 266 LEU LEU A . n A 1 243 ILE 243 267 267 ILE ILE A . n A 1 244 ARG 244 268 268 ARG ARG A . n A 1 245 TRP 245 269 269 TRP TRP A . n A 1 246 CYS 246 270 270 CYS CYS A . n A 1 247 LEU 247 271 271 LEU LEU A . n A 1 248 ALA 248 272 272 ALA ALA A . n A 1 249 LEU 249 273 273 LEU LEU A . n A 1 250 ARG 250 274 274 ARG ARG A . n A 1 251 PRO 251 275 275 PRO PRO A . n A 1 252 SER 252 276 276 SER SER A . n A 1 253 ASP 253 277 277 ASP ASP A . n A 1 254 ARG 254 278 278 ARG ARG A . n A 1 255 PRO 255 279 279 PRO PRO A . n A 1 256 THR 256 280 280 THR THR A . n A 1 257 PHE 257 281 281 PHE PHE A . n A 1 258 GLU 258 282 282 GLU GLU A . n A 1 259 GLU 259 283 283 GLU GLU A . n A 1 260 ILE 260 284 284 ILE ILE A . n A 1 261 GLN 261 285 285 GLN GLN A . n A 1 262 ASN 262 286 286 ASN ASN A . n A 1 263 HIS 263 287 287 HIS HIS A . n A 1 264 PRO 264 288 288 PRO PRO A . n A 1 265 TRP 265 289 289 TRP TRP A . n A 1 266 MET 266 290 290 MET MET A . n A 1 267 GLN 267 291 291 GLN GLN A . n A 1 268 ASP 268 292 292 ASP ASP A . n A 1 269 VAL 269 293 293 VAL VAL A . n A 1 270 LEU 270 294 294 LEU LEU A . n A 1 271 LEU 271 295 295 LEU LEU A . n A 1 272 PRO 272 296 296 PRO PRO A . n A 1 273 GLN 273 297 297 GLN GLN A . n A 1 274 GLU 274 298 298 GLU GLU A . n A 1 275 THR 275 299 299 THR THR A . n A 1 276 ALA 276 300 300 ALA ALA A . n A 1 277 GLU 277 301 301 GLU GLU A . n A 1 278 ILE 278 302 302 ILE ILE A . n A 1 279 HIS 279 303 303 HIS HIS A . n A 1 280 LEU 280 304 304 LEU LEU A . n A 1 281 HIS 281 305 305 HIS HIS A . n A 1 282 SER 282 306 ? ? ? A . n A 1 283 LEU 283 307 ? ? ? A . n A 1 284 SER 284 308 ? ? ? A . n A 1 285 PRO 285 309 ? ? ? A . n A 1 286 GLY 286 310 ? ? ? A . n A 1 287 PRO 287 311 ? ? ? A . n A 1 288 SER 288 312 ? ? ? A . n A 1 289 LYS 289 313 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RTX _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1306 _pdbx_nonpoly_scheme.pdb_mon_id RTX _pdbx_nonpoly_scheme.auth_mon_id RTX _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SEP _pdbx_struct_mod_residue.label_seq_id 237 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SEP _pdbx_struct_mod_residue.auth_seq_id 261 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-26 2 'Structure model' 1 1 2021-03-17 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_conn 4 2 'Structure model' struct_ref_seq_dif 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 2 'Structure model' '_struct_ref_seq_dif.details' 5 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 82 ? ? -48.91 -16.50 2 1 ASP A 167 ? ? -156.27 46.09 3 1 ILE A 168 ? ? -69.60 99.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 25 ? A GLY 1 2 1 Y 1 A PRO 26 ? A PRO 2 3 1 Y 1 A HIS 27 ? A HIS 3 4 1 Y 1 A MET 28 ? A MET 4 5 1 Y 1 A LYS 29 ? A LYS 5 6 1 Y 1 A GLU 30 ? A GLU 6 7 1 Y 1 A LYS 31 ? A LYS 7 8 1 Y 1 A GLU 32 ? A GLU 8 9 1 Y 1 A SER 306 ? A SER 282 10 1 Y 1 A LEU 307 ? A LEU 283 11 1 Y 1 A SER 308 ? A SER 284 12 1 Y 1 A PRO 309 ? A PRO 285 13 1 Y 1 A GLY 310 ? A GLY 286 14 1 Y 1 A PRO 311 ? A PRO 287 15 1 Y 1 A SER 312 ? A SER 288 16 1 Y 1 A LYS 313 ? A LYS 289 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '4-(2-chloro-10H-phenoxazin-10-yl)-N,N-diethylbutan-1-amine' _pdbx_entity_nonpoly.comp_id RTX #