HEADER HYDROLASE 27-AUG-13 4MEM TITLE CRYSTAL STRUCTURE OF THE RAT USP11 DUSP-UBL DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DUSP-UBL DOMAINS, UNP RESIDUES 19-237; COMPND 5 EC: 3.4.19.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 STRAIN: 10116; SOURCE 6 GENE: RCG_42884, USP11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS DOMAIN PRESENT IN UBIQUITIN SPECIFIC PROTEASES (DUSP), UBIQUITIN-LIKE KEYWDS 2 DOMAIN (UBL), DU FINGER, UBIQUITIN THIOLESTERASE, HYDROLASE, KEYWDS 3 DEUBIQUITINATING ENZYME (DUB) EXPDTA X-RAY DIFFRACTION AUTHOR S.HARPER,H.E.GRATTON,I.CORNACIU,M.OBERER,D.J.SCOTT,J.EMSLEY,I.DREVENY REVDAT 3 20-SEP-23 4MEM 1 SEQADV REVDAT 2 28-MAY-14 4MEM 1 JRNL REVDAT 1 07-MAY-14 4MEM 0 JRNL AUTH S.HARPER,H.E.GRATTON,I.CORNACIU,M.OBERER,D.J.SCOTT,J.EMSLEY, JRNL AUTH 2 I.DREVENY JRNL TITL STRUCTURE AND CATALYTIC REGULATORY FUNCTION OF UBIQUITIN JRNL TITL 2 SPECIFIC PROTEASE 11 N-TERMINAL AND UBIQUITIN-LIKE DOMAINS. JRNL REF BIOCHEMISTRY V. 53 2966 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24724799 JRNL DOI 10.1021/BI500116X REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.6372 - 4.4757 1.00 2855 142 0.1972 0.2558 REMARK 3 2 4.4757 - 3.5527 1.00 2691 149 0.1718 0.1903 REMARK 3 3 3.5527 - 3.1036 1.00 2625 158 0.2253 0.2587 REMARK 3 4 3.1036 - 2.8199 1.00 2639 157 0.2490 0.3086 REMARK 3 5 2.8199 - 2.6178 1.00 2621 139 0.2786 0.3563 REMARK 3 6 2.6178 - 2.4634 1.00 2611 140 0.2931 0.3253 REMARK 3 7 2.4634 - 2.3401 1.00 2622 111 0.2999 0.3420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3613 REMARK 3 ANGLE : 0.916 4925 REMARK 3 CHIRALITY : 0.036 524 REMARK 3 PLANARITY : 0.005 642 REMARK 3 DIHEDRAL : 13.536 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 26:146 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0652 17.1371 87.8067 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3705 REMARK 3 T33: 0.3412 T12: 0.0309 REMARK 3 T13: -0.0112 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.4324 L22: 2.8283 REMARK 3 L33: 1.2332 L12: 1.5738 REMARK 3 L13: -1.4249 L23: -0.8826 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: 0.0102 S13: -0.1038 REMARK 3 S21: 0.0308 S22: 0.0496 S23: 0.0411 REMARK 3 S31: 0.0053 S32: -0.1203 S33: 0.0274 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 147:237 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8650 -15.0875 100.5098 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.4516 REMARK 3 T33: 0.4300 T12: -0.0463 REMARK 3 T13: -0.0573 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.1241 L22: 3.0437 REMARK 3 L33: 1.7432 L12: -1.1325 REMARK 3 L13: -0.1365 L23: -2.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: 0.0645 S13: -0.0097 REMARK 3 S21: -0.0426 S22: 0.1589 S23: 0.2399 REMARK 3 S31: 0.1569 S32: -0.2107 S33: -0.0342 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 27:144 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3721 7.6158 138.7792 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.3260 REMARK 3 T33: 0.3212 T12: 0.0352 REMARK 3 T13: -0.0093 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.0963 L22: 3.4342 REMARK 3 L33: 3.9034 L12: -0.3017 REMARK 3 L13: -0.1150 L23: 1.6109 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.1143 S13: -0.0345 REMARK 3 S21: -0.1091 S22: -0.0062 S23: 0.1764 REMARK 3 S31: -0.0112 S32: -0.0935 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 145:242 REMARK 3 ORIGIN FOR THE GROUP (A): -40.5015 -19.6132 112.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.4610 T22: 0.4976 REMARK 3 T33: 0.3621 T12: 0.0790 REMARK 3 T13: -0.0073 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.6301 L22: 3.0588 REMARK 3 L33: 3.4027 L12: -0.1515 REMARK 3 L13: 0.4322 L23: 0.8278 REMARK 3 S TENSOR REMARK 3 S11: -0.2052 S12: -0.1220 S13: 0.1645 REMARK 3 S21: 0.1209 S22: 0.2547 S23: -0.0846 REMARK 3 S31: 0.0904 S32: 0.0902 S33: -0.0284 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.77 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.292 REMARK 200 RESOLUTION RANGE LOW (A) : 74.635 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4MEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M MALIC ACID, 24% W/V PEG 3350, REMARK 280 10 MM STRONTIUM CHLORIDE, PH 6.77, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.07800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.63450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.07800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.63450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAIN A CHAIN B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 37.28500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ASP A 19 REMARK 465 ARG A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 GLN A 23 REMARK 465 PRO A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 18 REMARK 465 ASP B 19 REMARK 465 ARG B 20 REMARK 465 GLU B 21 REMARK 465 THR B 22 REMARK 465 GLN B 23 REMARK 465 PRO B 24 REMARK 465 GLU B 25 REMARK 465 ALA B 26 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LEU A 237 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 325 O HOH B 327 3346 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 42 37.65 -88.85 REMARK 500 GLN A 89 31.80 -97.13 REMARK 500 ASP A 123 -124.29 52.71 REMARK 500 ASP A 155 70.13 -151.27 REMARK 500 GLU B 42 40.49 -86.07 REMARK 500 ASP B 123 -125.35 52.82 REMARK 500 ASP B 155 73.60 -151.89 REMARK 500 SER B 196 179.42 60.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MEL RELATED DB: PDB REMARK 900 THE SAME DOMAINS FROM HUMAN USP11 DBREF 4MEM A 19 237 UNP Q5D006 Q5D006_RAT 19 237 DBREF 4MEM B 19 237 UNP Q5D006 Q5D006_RAT 19 237 SEQADV 4MEM MET A 18 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM GLU A 238 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 239 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 240 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 241 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 242 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 243 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS A 244 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM MET B 18 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM GLU B 238 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 239 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 240 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 241 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 242 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 243 UNP Q5D006 EXPRESSION TAG SEQADV 4MEM HIS B 244 UNP Q5D006 EXPRESSION TAG SEQRES 1 A 227 MET ASP ARG GLU THR GLN PRO GLU ALA MET PRO ASP LEU SEQRES 2 A 227 ASP GLN GLN TRP ARG GLN ILE GLY ASN GLY ARG GLU ARG SEQRES 3 A 227 PRO LEU ARG ALA GLY GLU SER TRP PHE LEU VAL GLU LYS SEQRES 4 A 227 HIS TRP TYR LYS GLN TRP GLU ALA TYR VAL LYS GLY GLY SEQRES 5 A 227 ASP GLN ASP ALA SER THR PHE PRO GLY SER ILE ASN ASN SEQRES 6 A 227 SER GLY LEU PHE GLU ASP GLN ILE SER TRP HIS LEU ARG SEQRES 7 A 227 GLU ARG LEU VAL GLU GLY ASP ASP TYR VAL LEU LEU PRO SEQRES 8 A 227 ALA PRO ALA TRP ASN TYR LEU VAL SER TRP TYR GLY LEU SEQRES 9 A 227 LYS ASP ASP GLN PRO PRO ILE GLU ARG LYS VAL ILE GLU SEQRES 10 A 227 LEU PRO GLY ILE ARG LYS VAL GLU VAL TYR PRO ILE GLU SEQRES 11 A 227 LEU LEU LEU VAL GLN HIS SER ASP MET GLU THR ALA LEU SEQRES 12 A 227 THR ILE GLN PHE SER TYR SER ASP SER VAL ASP LEU VAL SEQRES 13 A 227 LEU GLN THR ALA ARG GLU GLN PHE LEU VAL GLU PRO GLN SEQRES 14 A 227 GLU ASP THR ARG LEU TRP THR LYS ASN SER GLU GLY SER SEQRES 15 A 227 LEU ASP ARG LEU CYS ASN THR GLN ILE THR LEU LEU ASP SEQRES 16 A 227 ALA CYS LEU GLU THR GLY GLN LEU VAL ILE MET GLU THR SEQRES 17 A 227 ARG ASN LYS ASP GLY THR TRP PRO SER ALA GLN LEU GLU SEQRES 18 A 227 HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 MET ASP ARG GLU THR GLN PRO GLU ALA MET PRO ASP LEU SEQRES 2 B 227 ASP GLN GLN TRP ARG GLN ILE GLY ASN GLY ARG GLU ARG SEQRES 3 B 227 PRO LEU ARG ALA GLY GLU SER TRP PHE LEU VAL GLU LYS SEQRES 4 B 227 HIS TRP TYR LYS GLN TRP GLU ALA TYR VAL LYS GLY GLY SEQRES 5 B 227 ASP GLN ASP ALA SER THR PHE PRO GLY SER ILE ASN ASN SEQRES 6 B 227 SER GLY LEU PHE GLU ASP GLN ILE SER TRP HIS LEU ARG SEQRES 7 B 227 GLU ARG LEU VAL GLU GLY ASP ASP TYR VAL LEU LEU PRO SEQRES 8 B 227 ALA PRO ALA TRP ASN TYR LEU VAL SER TRP TYR GLY LEU SEQRES 9 B 227 LYS ASP ASP GLN PRO PRO ILE GLU ARG LYS VAL ILE GLU SEQRES 10 B 227 LEU PRO GLY ILE ARG LYS VAL GLU VAL TYR PRO ILE GLU SEQRES 11 B 227 LEU LEU LEU VAL GLN HIS SER ASP MET GLU THR ALA LEU SEQRES 12 B 227 THR ILE GLN PHE SER TYR SER ASP SER VAL ASP LEU VAL SEQRES 13 B 227 LEU GLN THR ALA ARG GLU GLN PHE LEU VAL GLU PRO GLN SEQRES 14 B 227 GLU ASP THR ARG LEU TRP THR LYS ASN SER GLU GLY SER SEQRES 15 B 227 LEU ASP ARG LEU CYS ASN THR GLN ILE THR LEU LEU ASP SEQRES 16 B 227 ALA CYS LEU GLU THR GLY GLN LEU VAL ILE MET GLU THR SEQRES 17 B 227 ARG ASN LYS ASP GLY THR TRP PRO SER ALA GLN LEU GLU SEQRES 18 B 227 HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *53(H2 O) HELIX 1 1 ASP A 29 GLU A 42 1 14 HELIX 2 2 LYS A 56 GLY A 69 1 14 HELIX 3 3 ASN A 82 PHE A 86 5 5 HELIX 4 4 ALA A 109 GLY A 120 1 12 HELIX 5 5 SER A 169 PHE A 181 1 13 HELIX 6 6 TRP A 232 GLN A 236 5 5 HELIX 7 7 ASP B 29 GLU B 42 1 14 HELIX 8 8 LYS B 56 GLY B 69 1 14 HELIX 9 9 ASN B 82 PHE B 86 5 5 HELIX 10 10 ALA B 109 GLY B 120 1 12 HELIX 11 11 SER B 169 PHE B 181 1 13 HELIX 12 12 TRP B 232 GLN B 236 5 5 SHEET 1 A 4 TYR A 104 PRO A 108 0 SHEET 2 A 4 SER A 50 GLU A 55 -1 N PHE A 52 O LEU A 107 SHEET 3 A 4 GLU A 129 LEU A 135 -1 O ARG A 130 N TRP A 51 SHEET 4 A 4 ILE A 138 VAL A 141 -1 O ILE A 138 N LEU A 135 SHEET 1 B 5 ASP A 155 PHE A 164 0 SHEET 2 B 5 ILE A 146 GLN A 152 -1 N LEU A 148 O ILE A 162 SHEET 3 B 5 LEU A 220 THR A 225 1 O VAL A 221 N LEU A 149 SHEET 4 B 5 THR A 189 LYS A 194 -1 N ARG A 190 O GLU A 224 SHEET 5 B 5 LEU A 200 ARG A 202 -1 O ASP A 201 N THR A 193 SHEET 1 C 4 TYR B 104 PRO B 108 0 SHEET 2 C 4 SER B 50 GLU B 55 -1 N PHE B 52 O LEU B 107 SHEET 3 C 4 GLU B 129 LEU B 135 -1 O ARG B 130 N TRP B 51 SHEET 4 C 4 ILE B 138 GLU B 142 -1 O LYS B 140 N ILE B 133 SHEET 1 D 5 ASP B 155 PHE B 164 0 SHEET 2 D 5 ILE B 146 GLN B 152 -1 N LEU B 148 O ILE B 162 SHEET 3 D 5 LEU B 220 THR B 225 1 O VAL B 221 N LEU B 149 SHEET 4 D 5 THR B 189 LYS B 194 -1 N TRP B 192 O ILE B 222 SHEET 5 D 5 LEU B 200 ARG B 202 -1 O ASP B 201 N THR B 193 SSBOND 1 CYS A 204 CYS B 204 1555 1555 2.04 CISPEP 1 GLU A 197 GLY A 198 0 0.06 CISPEP 2 GLU B 197 GLY B 198 0 -2.24 CRYST1 37.285 80.156 149.269 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006699 0.00000