HEADER TRANSPORT PROTEIN 27-AUG-13 4MEV TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 RHODOFERAX FERRIREDUCENS (RFER_1840), TARGET EFI-510211, WITH BOUND TITLE 3 MALONATE, SPACE GROUP I422 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER-DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOFERAX FERRIREDUCENS; SOURCE 3 ORGANISM_TAXID: 338969; SOURCE 4 STRAIN: T118; SOURCE 5 GENE: RFER_1840; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,S.ZHAO,M.STEAD, AUTHOR 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,M.P.JACOBSON,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 20-SEP-23 4MEV 1 REMARK SEQADV REVDAT 3 15-NOV-17 4MEV 1 REMARK REVDAT 2 25-FEB-15 4MEV 1 JRNL REVDAT 1 04-SEP-13 4MEV 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 40419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5112 - 4.3304 0.95 2836 156 0.1419 0.1741 REMARK 3 2 4.3304 - 3.4406 0.97 2792 147 0.1166 0.1337 REMARK 3 3 3.4406 - 3.0067 0.98 2793 145 0.1394 0.1451 REMARK 3 4 3.0067 - 2.7322 0.99 2778 155 0.1431 0.1635 REMARK 3 5 2.7322 - 2.5367 0.99 2812 126 0.1381 0.1871 REMARK 3 6 2.5367 - 2.3873 1.00 2773 150 0.1298 0.1759 REMARK 3 7 2.3873 - 2.2678 1.00 2778 149 0.1390 0.1539 REMARK 3 8 2.2678 - 2.1692 1.00 2781 146 0.1593 0.2110 REMARK 3 9 2.1692 - 2.0857 1.00 2787 142 0.1402 0.1962 REMARK 3 10 2.0857 - 2.0138 1.00 2783 142 0.1530 0.1811 REMARK 3 11 2.0138 - 1.9508 1.00 2748 155 0.1587 0.1918 REMARK 3 12 1.9508 - 1.8951 0.96 2681 136 0.1824 0.2338 REMARK 3 13 1.8951 - 1.8452 0.93 2597 131 0.1953 0.2373 REMARK 3 14 1.8452 - 1.8000 0.89 2492 108 0.2197 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2473 REMARK 3 ANGLE : 1.259 3331 REMARK 3 CHIRALITY : 0.070 363 REMARK 3 PLANARITY : 0.006 428 REMARK 3 DIHEDRAL : 14.177 935 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5787 41.5412 23.2807 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.1195 REMARK 3 T33: 0.1133 T12: -0.0102 REMARK 3 T13: 0.0322 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0964 L22: 1.6659 REMARK 3 L33: 1.3262 L12: 0.4155 REMARK 3 L13: -0.1431 L23: -0.3441 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.0899 S13: -0.0718 REMARK 3 S21: -0.0058 S22: -0.0521 S23: -0.0629 REMARK 3 S31: 0.1847 S32: -0.0127 S33: 0.0601 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8815 55.9702 14.6737 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.1516 REMARK 3 T33: 0.1465 T12: -0.0116 REMARK 3 T13: 0.0202 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.9802 L22: 1.7522 REMARK 3 L33: 1.9654 L12: -0.2533 REMARK 3 L13: 0.0825 L23: -0.6711 REMARK 3 S TENSOR REMARK 3 S11: 0.0606 S12: -0.0040 S13: 0.0730 REMARK 3 S21: -0.0573 S22: 0.0064 S23: 0.2004 REMARK 3 S31: -0.0881 S32: -0.2975 S33: -0.0627 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2685 47.1759 17.1453 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1648 REMARK 3 T33: 0.1709 T12: -0.0419 REMARK 3 T13: 0.0122 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.9540 L22: 1.2685 REMARK 3 L33: 1.2296 L12: -0.2353 REMARK 3 L13: 0.0795 L23: -0.5890 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0794 S13: -0.0928 REMARK 3 S21: -0.0874 S22: 0.0709 S23: 0.2627 REMARK 3 S31: 0.1436 S32: -0.3306 S33: -0.1009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2110 37.8528 12.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.2137 T22: 0.1004 REMARK 3 T33: 0.1543 T12: -0.0295 REMARK 3 T13: 0.0596 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.0183 L22: 2.0265 REMARK 3 L33: 3.4219 L12: -1.6045 REMARK 3 L13: 2.1799 L23: -1.2031 REMARK 3 S TENSOR REMARK 3 S11: 0.2025 S12: 0.2285 S13: -0.2002 REMARK 3 S21: -0.3562 S22: -0.1367 S23: -0.0132 REMARK 3 S31: 0.4436 S32: 0.1891 S33: -0.0327 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3097 59.5545 4.4928 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.1557 REMARK 3 T33: 0.1752 T12: 0.0504 REMARK 3 T13: -0.0009 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.1982 L22: 3.4770 REMARK 3 L33: 2.6057 L12: 0.6458 REMARK 3 L13: -0.7948 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.1993 S13: 0.1211 REMARK 3 S21: -0.2959 S22: 0.1138 S23: 0.1896 REMARK 3 S31: -0.1723 S32: -0.0176 S33: -0.1175 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4590 63.4074 20.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.0762 REMARK 3 T33: 0.1791 T12: -0.0146 REMARK 3 T13: 0.0160 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.7217 L22: 3.5221 REMARK 3 L33: 5.4530 L12: -0.9973 REMARK 3 L13: -0.5363 L23: 0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0939 S13: 0.1235 REMARK 3 S21: 0.0929 S22: -0.0485 S23: -0.1401 REMARK 3 S31: -0.0732 S32: 0.1028 S33: 0.0562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4MCO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MG/ML PROTEIN IN 10 MM HEPES, PH REMARK 280 7.5, 10 MM MALONATE, RESERVOIR (MCSG4 C1): 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 7.0, 2 M DIAMMONIUM HYDROGEN CITRATE, CRYOPROTECTION: REMARK 280 4:1 2.5 M DIAMMONIUM HYDROGEN CITRATE:RESERVOIR, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 64.97350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.13600 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 64.97350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 52.13600 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 64.97350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 52.13600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 64.97350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 52.13600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.97350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.13600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.97350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 52.13600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 64.97350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 52.13600 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 64.97350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 64.97350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 52.13600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 782 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 PHE A 20 REMARK 465 SER A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 PHE A 24 REMARK 465 ALA A 25 REMARK 465 GLN A 26 REMARK 465 THR A 27 REMARK 465 ALA A 339 REMARK 465 GLU A 340 REMARK 465 ASN A 341 REMARK 465 LEU A 342 REMARK 465 TYR A 343 REMARK 465 PHE A 344 REMARK 465 GLN A 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 681 O HOH A 751 1.96 REMARK 500 O HOH A 636 O HOH A 654 2.05 REMARK 500 O HOH A 643 O HOH A 717 2.10 REMARK 500 O HOH A 644 O HOH A 679 2.14 REMARK 500 O HOH A 575 O HOH A 692 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 816 O HOH A 834 16555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 315 -75.92 -132.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510211 RELATED DB: TARGETTRACK DBREF 4MEV A 1 338 UNP Q21XD7 Q21XD7_RHOFD 1 338 SEQADV 4MEV ALA A 339 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV GLU A 340 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV ASN A 341 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV LEU A 342 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV TYR A 343 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV PHE A 344 UNP Q21XD7 EXPRESSION TAG SEQADV 4MEV GLN A 345 UNP Q21XD7 EXPRESSION TAG SEQRES 1 A 345 MET GLN ARG ARG GLN LEU LEU GLN SER MET GLY GLY LEU SEQRES 2 A 345 ALA ALA SER THR MET PRO PHE SER LEU ALA PHE ALA GLN SEQRES 3 A 345 THR SER ALA LEU LYS ILE SER HIS GLN PHE PRO GLY GLY SEQRES 4 A 345 THR ILE LYS GLU GLY ASP PHE ARG ASP ARG LEU VAL ARG SEQRES 5 A 345 ASN PHE ALA ALA GLU VAL GLU LYS ARG SER LYS GLY ALA SEQRES 6 A 345 MET LYS PHE GLU ILE TYR PRO GLY SER SER LEU MET LYS SEQRES 7 A 345 THR ASN ALA GLN PHE SER SER MET ARG LYS GLY ALA LEU SEQRES 8 A 345 ASP MET ALA LEU ILE PRO LEU SER TYR ALA GLY GLY GLU SEQRES 9 A 345 VAL PRO GLU LEU ASN ILE GLY LEU MET PRO GLY LEU VAL SEQRES 10 A 345 VAL SER TYR GLU GLN ALA TYR SER TRP LYS THR LYS PRO SEQRES 11 A 345 VAL GLY ILE GLU LEU THR ARG VAL LEU GLN GLU LYS GLY SEQRES 12 A 345 ILE VAL LEU ILE SER TRP ILE TRP GLN ALA GLY GLY VAL SEQRES 13 A 345 ALA SER ARG GLY LYS PRO VAL VAL GLU PRO GLU ASP ALA SEQRES 14 A 345 LYS GLY MET LYS ILE ARG GLY GLY SER ARG GLU MET ASP SEQRES 15 A 345 MET ILE LEU LYS ASP ALA GLY ALA ALA VAL VAL SER LEU SEQRES 16 A 345 PRO SER ASN GLU ILE TYR ALA ALA MET GLN THR GLY ALA SEQRES 17 A 345 MET ASP ALA ALA MET THR SER SER THR SER PHE ILE SER SEQRES 18 A 345 PHE ARG LEU GLU GLU VAL ALA LYS ALA LEU THR THR GLY SEQRES 19 A 345 ARG THR GLY ALA TYR TRP PHE MET PHE GLU PRO LEU MET SEQRES 20 A 345 MET SER LYS ALA ILE PHE ASP LYS LEU PRO LYS ASP GLN SEQRES 21 A 345 ARG ASP MET LEU MET THR VAL GLY ALA GLU MET GLU LYS SEQRES 22 A 345 PHE ALA LEU GLU ALA ALA LYS LYS ASP ASP ILE ASP VAL SEQRES 23 A 345 ALA ALA VAL TYR GLN LYS ALA GLY ALA LYS VAL VAL ASP SEQRES 24 A 345 LEU SER ASP GLY THR ILE LYS LYS TRP GLN ASP ILE ALA SEQRES 25 A 345 ARG LYS THR ALA TRP LYS ASP TYR GLY ALA LYS ASN GLU SEQRES 26 A 345 GLY CYS ALA LYS LEU LEU ALA LEU ALA GLN GLN THR LEU SEQRES 27 A 345 ALA GLU ASN LEU TYR PHE GLN HET CIT A 401 18 HET MLI A 402 9 HETNAM CIT CITRIC ACID HETNAM MLI MALONATE ION FORMUL 2 CIT C6 H8 O7 FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 HOH *340(H2 O) HELIX 1 1 ASP A 45 SER A 62 1 18 HELIX 2 2 LYS A 78 ASN A 80 5 3 HELIX 3 3 ALA A 81 LYS A 88 1 8 HELIX 4 4 PRO A 97 GLY A 102 5 6 HELIX 5 5 VAL A 105 LEU A 112 5 8 HELIX 6 6 SER A 119 TRP A 126 1 8 HELIX 7 7 LYS A 129 LYS A 142 1 14 HELIX 8 8 GLU A 165 LYS A 170 5 6 HELIX 9 9 SER A 178 ALA A 188 1 11 HELIX 10 10 PRO A 196 ASN A 198 5 3 HELIX 11 11 GLU A 199 THR A 206 1 8 HELIX 12 12 SER A 216 PHE A 222 1 7 HELIX 13 13 ARG A 223 ALA A 228 5 6 HELIX 14 14 LYS A 250 LEU A 256 1 7 HELIX 15 15 PRO A 257 ALA A 293 1 37 HELIX 16 16 SER A 301 THR A 315 1 15 HELIX 17 17 THR A 315 ALA A 322 1 8 HELIX 18 18 ASN A 324 GLN A 336 1 13 SHEET 1 A 5 PHE A 68 TYR A 71 0 SHEET 2 A 5 LEU A 30 SER A 33 1 N ILE A 32 O TYR A 71 SHEET 3 A 5 MET A 93 LEU A 95 1 O MET A 93 N SER A 33 SHEET 4 A 5 LEU A 246 SER A 249 -1 O MET A 247 N ALA A 94 SHEET 5 A 5 ILE A 144 SER A 148 -1 N VAL A 145 O MET A 248 SHEET 1 B 5 ALA A 191 VAL A 192 0 SHEET 2 B 5 LYS A 173 ARG A 175 1 N ILE A 174 O ALA A 191 SHEET 3 B 5 ALA A 211 SER A 215 1 O MET A 213 N ARG A 175 SHEET 4 B 5 TRP A 151 SER A 158 -1 N ALA A 157 O ALA A 212 SHEET 5 B 5 PHE A 241 PHE A 243 -1 O MET A 242 N GLN A 152 SHEET 1 C 6 ALA A 191 VAL A 192 0 SHEET 2 C 6 LYS A 173 ARG A 175 1 N ILE A 174 O ALA A 191 SHEET 3 C 6 ALA A 211 SER A 215 1 O MET A 213 N ARG A 175 SHEET 4 C 6 TRP A 151 SER A 158 -1 N ALA A 157 O ALA A 212 SHEET 5 C 6 ALA A 230 THR A 232 -1 O THR A 232 N VAL A 156 SHEET 6 C 6 LYS A 296 VAL A 298 1 O LYS A 296 N LEU A 231 SITE 1 AC1 13 GLN A 140 LYS A 250 PHE A 253 ASP A 254 SITE 2 AC1 13 LYS A 318 ASP A 319 ALA A 322 LYS A 323 SITE 3 AC1 13 HOH A 596 HOH A 648 HOH A 686 HOH A 713 SITE 4 AC1 13 HOH A 725 SITE 1 AC2 12 PHE A 36 ARG A 47 PRO A 97 TYR A 100 SITE 2 AC2 12 ARG A 175 SER A 197 THR A 214 SER A 215 SITE 3 AC2 12 SER A 218 TRP A 240 MET A 242 GLU A 244 CRYST1 129.947 129.947 104.272 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007695 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009590 0.00000