HEADER METAL TRANSPORT 27-AUG-13 4MF9 TITLE CRYSTAL STRUCTURE OF HOLO-PHUS, A HEME-BINDING PROTEIN FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMIN DEGRADING FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PHUS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOST-PATHOGEN INTERACTIONS, STRUCTURAL GENOMICS, MONTREAL-KINGSTON KEYWDS 2 BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, HEME-TRAFFICKING KEYWDS 3 PROTEIN, HEME-DEGRADING ENZYME, HEME, HEMO, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.J.Y.LEE,Z.JIA,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS AUTHOR 2 INITIATIVE (BSGI) REVDAT 4 28-FEB-24 4MF9 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4MF9 1 REMARK REVDAT 2 08-OCT-14 4MF9 1 JRNL REVDAT 1 05-MAR-14 4MF9 0 JRNL AUTH M.J.LEE,D.SCHEP,B.MCLAUGHLIN,M.KAUFMANN,Z.JIA JRNL TITL STRUCTURAL ANALYSIS AND IDENTIFICATION OF PHUS AS A JRNL TITL 2 HEME-DEGRADING ENZYME FROM PSEUDOMONAS AERUGINOSA. JRNL REF J.MOL.BIOL. V. 426 1936 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24560694 JRNL DOI 10.1016/J.JMB.2014.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7125 - 5.1738 1.00 2855 151 0.1787 0.1937 REMARK 3 2 5.1738 - 4.1189 1.00 2782 146 0.1535 0.1634 REMARK 3 3 4.1189 - 3.6018 1.00 2726 144 0.1729 0.2035 REMARK 3 4 3.6018 - 3.2742 1.00 2721 143 0.1845 0.2254 REMARK 3 5 3.2742 - 3.0404 1.00 2727 144 0.2087 0.2364 REMARK 3 6 3.0404 - 2.8617 1.00 2724 143 0.2098 0.2656 REMARK 3 7 2.8617 - 2.7188 1.00 2723 143 0.2169 0.2601 REMARK 3 8 2.7188 - 2.6007 1.00 2716 143 0.2176 0.2502 REMARK 3 9 2.6007 - 2.5008 1.00 2683 142 0.2116 0.2482 REMARK 3 10 2.5008 - 2.4146 1.00 2714 143 0.2181 0.2702 REMARK 3 11 2.4146 - 2.3393 1.00 2702 142 0.2096 0.2763 REMARK 3 12 2.3393 - 2.2725 1.00 2697 142 0.2055 0.2664 REMARK 3 13 2.2725 - 2.2127 1.00 2691 141 0.2140 0.2871 REMARK 3 14 2.2127 - 2.1588 1.00 2682 142 0.2249 0.2755 REMARK 3 15 2.1588 - 2.1098 1.00 2704 142 0.2261 0.3075 REMARK 3 16 2.1098 - 2.0650 1.00 2705 142 0.2457 0.2974 REMARK 3 17 2.0650 - 2.0237 1.00 2659 140 0.2561 0.3200 REMARK 3 18 2.0237 - 1.9855 1.00 2718 143 0.2881 0.3550 REMARK 3 19 1.9855 - 1.9501 0.97 2603 138 0.2964 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5590 REMARK 3 ANGLE : 1.163 7631 REMARK 3 CHIRALITY : 0.078 818 REMARK 3 PLANARITY : 0.006 998 REMARK 3 DIHEDRAL : 16.282 2007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M SODIUM ACETATE, 0.1 M TRIS, 30% REMARK 280 PEG 4000, PH 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 93.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.30000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 93.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.30000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 93.50000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 93.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 21.30000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 93.50000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 93.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 HIS B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 334 O1A HEM A 400 1.47 REMARK 500 OD2 ASP A 173 O HOH A 656 1.83 REMARK 500 SG CYS B 274 O HOH B 522 1.83 REMARK 500 OD2 ASP A 280 O HOH A 603 1.94 REMARK 500 CE MET A 101 O HOH A 629 1.95 REMARK 500 OE2 GLU B 80 O HOH B 741 1.96 REMARK 500 O HOH B 592 O HOH B 603 1.96 REMARK 500 OE1 GLU A 251 O ALA B 129 1.96 REMARK 500 NH2 ARG B 22 O HOH B 742 1.97 REMARK 500 O HOH B 539 O HOH B 603 2.01 REMARK 500 O HOH B 663 O HOH B 692 2.03 REMARK 500 NH2 ARG A 199 OE2 GLU A 232 2.05 REMARK 500 NH2 ARG A 130 OE2 GLU B 346 2.07 REMARK 500 O HOH B 661 O HOH B 731 2.07 REMARK 500 O HOH B 615 O HOH B 704 2.07 REMARK 500 O HOH B 512 O HOH B 728 2.08 REMARK 500 OE2 GLU B 165 O HOH B 698 2.10 REMARK 500 OE2 GLU B 251 O HOH B 645 2.11 REMARK 500 O GLU B 127 O GLY B 131 2.11 REMARK 500 NE ARG A 130 O HOH A 651 2.12 REMARK 500 O HOH B 665 O HOH B 745 2.12 REMARK 500 O HOH B 685 O HOH B 755 2.13 REMARK 500 OE1 GLU A 80 O HOH A 593 2.14 REMARK 500 O HOH A 575 O HOH A 597 2.14 REMARK 500 NH2 ARG A 112 O HOH A 689 2.15 REMARK 500 OD2 ASP A 342 O HOH A 641 2.16 REMARK 500 N ASP A 173 O HOH A 683 2.16 REMARK 500 O HOH B 608 O HOH B 729 2.17 REMARK 500 SG CYS A 274 O HOH A 532 2.18 REMARK 500 OD2 ASP B 280 O HOH B 724 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 517 O HOH B 625 6445 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 85 CD GLU A 85 OE1 -0.067 REMARK 500 GLU A 85 CD GLU A 85 OE2 -0.077 REMARK 500 GLU B 232 CD GLU B 232 OE1 -0.066 REMARK 500 GLU B 235 CD GLU B 235 OE2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU B 21 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU B 21 CB - CG - CD1 ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 112 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 112 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 199 CG - CD - NE ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG B 199 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 222 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 222 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 345 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 345 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 51 -68.45 -104.52 REMARK 500 ASN A 79 -162.87 -124.29 REMARK 500 ASP A 108 -76.22 -119.55 REMARK 500 ALA A 152 -163.21 -128.01 REMARK 500 ASP A 173 161.32 73.92 REMARK 500 ALA A 174 21.80 -145.27 REMARK 500 LEU A 176 114.44 82.73 REMARK 500 CYS A 274 -54.65 -124.57 REMARK 500 ASP A 280 -133.10 55.05 REMARK 500 PRO B 26 -97.63 -140.22 REMARK 500 ILE B 51 -66.92 -106.32 REMARK 500 ASN B 79 -166.72 -120.11 REMARK 500 ASP B 108 -75.88 -111.86 REMARK 500 THR B 128 176.09 61.21 REMARK 500 ALA B 152 -148.02 -131.95 REMARK 500 LEU B 176 103.33 62.75 REMARK 500 CYS B 274 -59.86 -120.50 REMARK 500 ASP B 280 -134.25 53.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 209 NE2 REMARK 620 2 HEM A 400 NA 101.8 REMARK 620 3 HEM A 400 NB 103.0 85.8 REMARK 620 4 HEM A 400 NC 84.8 170.4 85.9 REMARK 620 5 HEM A 400 ND 79.9 92.7 177.0 95.3 REMARK 620 6 HOH A 689 O 172.0 73.6 70.5 99.1 106.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 209 NE2 REMARK 620 2 HEM B 400 NA 99.7 REMARK 620 3 HEM B 400 NB 97.9 87.6 REMARK 620 4 HEM B 400 NC 83.7 173.5 86.4 REMARK 620 5 HEM B 400 ND 85.0 93.0 177.0 92.8 REMARK 620 6 HOH B 558 O 169.9 70.4 80.2 106.0 97.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 400 DBREF 4MF9 A 1 354 UNP O68880 O68880_PSEAI 1 354 DBREF 4MF9 B 1 354 UNP O68880 O68880_PSEAI 1 354 SEQADV 4MF9 HIS A -5 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS A -4 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS A -3 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS A -2 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS A -1 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS A 0 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B -5 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B -4 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B -3 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B -2 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B -1 UNP O68880 EXPRESSION TAG SEQADV 4MF9 HIS B 0 UNP O68880 EXPRESSION TAG SEQRES 1 A 360 HIS HIS HIS HIS HIS HIS MET SER SER THR PRO SER LEU SEQRES 2 A 360 SER HIS SER PRO ALA GLU LEU TYR ARG ALA TRP GLN ASP SEQRES 3 A 360 LEU ARG ALA GLU ARG PRO GLN LEU ARG ALA ARG ASP ALA SEQRES 4 A 360 ALA ALA LEU LEU GLN VAL SER GLU GLY GLU LEU VAL ALA SEQRES 5 A 360 SER ARG VAL GLY ILE ASP ALA VAL ARG LEU ARG PRO ASP SEQRES 6 A 360 TRP ALA ALA LEU LEU PRO ALA LEU GLY GLU LEU GLY PRO SEQRES 7 A 360 ILE MET ALA LEU THR ARG ASN GLU HIS CYS VAL HIS GLU SEQRES 8 A 360 ARG LYS GLY PRO TYR ARG GLU VAL THR VAL SER ALA ASN SEQRES 9 A 360 GLY GLN MET GLY LEU VAL VAL SER PRO ASP ILE ASP LEU SEQRES 10 A 360 ARG LEU PHE LEU GLY GLY TRP ASN ALA VAL PHE ALA ILE SEQRES 11 A 360 ALA GLU GLU THR ALA ARG GLY THR GLN ARG SER ILE GLN SEQRES 12 A 360 VAL PHE ASP GLN GLN GLY VAL ALA VAL HIS LYS VAL PHE SEQRES 13 A 360 LEU ALA GLU ALA SER ASP VAL ARG ALA TRP GLU PRO LEU SEQRES 14 A 360 VAL GLU ARG LEU ARG ALA ALA GLU GLN ASP ALA VAL LEU SEQRES 15 A 360 ALA LEU HIS GLU PRO ARG ALA PRO ALA ALA ALA LEU VAL SEQRES 16 A 360 ASP ALA GLN ILE ASP ALA ALA ALA LEU ARG GLU GLY TRP SEQRES 17 A 360 ALA ALA LEU LYS ASP THR HIS HIS PHE HIS ALA LEU LEU SEQRES 18 A 360 LYS LYS HIS GLY ALA GLN ARG THR GLN ALA LEU ARG LEU SEQRES 19 A 360 ALA GLY GLY GLU TRP ALA GLU ARG LEU ASP ASN GLY ASP SEQRES 20 A 360 LEU ALA LYS LEU PHE GLU ALA ALA ALA GLU SER GLY LEU SEQRES 21 A 360 PRO ILE MET VAL PHE VAL GLY ASN ALA HIS CYS ILE GLN SEQRES 22 A 360 ILE HIS THR GLY PRO VAL CYS ASN LEU LYS TRP LEU ASP SEQRES 23 A 360 ASP TRP PHE ASN VAL LEU ASP PRO GLU PHE ASN LEU HIS SEQRES 24 A 360 LEU LYS THR THR GLY ILE ALA GLU LEU TRP ARG VAL ARG SEQRES 25 A 360 LYS PRO SER THR ASP GLY ILE VAL THR SER TRP GLU ALA SEQRES 26 A 360 PHE ASP PRO ASP GLY GLU LEU ILE VAL GLN LEU PHE GLY SEQRES 27 A 360 ALA ARG LYS PRO GLY GLU PRO GLU ARG ASP ASP TRP ARG SEQRES 28 A 360 GLU LEU ALA GLU SER PHE LYS ALA LEU SEQRES 1 B 360 HIS HIS HIS HIS HIS HIS MET SER SER THR PRO SER LEU SEQRES 2 B 360 SER HIS SER PRO ALA GLU LEU TYR ARG ALA TRP GLN ASP SEQRES 3 B 360 LEU ARG ALA GLU ARG PRO GLN LEU ARG ALA ARG ASP ALA SEQRES 4 B 360 ALA ALA LEU LEU GLN VAL SER GLU GLY GLU LEU VAL ALA SEQRES 5 B 360 SER ARG VAL GLY ILE ASP ALA VAL ARG LEU ARG PRO ASP SEQRES 6 B 360 TRP ALA ALA LEU LEU PRO ALA LEU GLY GLU LEU GLY PRO SEQRES 7 B 360 ILE MET ALA LEU THR ARG ASN GLU HIS CYS VAL HIS GLU SEQRES 8 B 360 ARG LYS GLY PRO TYR ARG GLU VAL THR VAL SER ALA ASN SEQRES 9 B 360 GLY GLN MET GLY LEU VAL VAL SER PRO ASP ILE ASP LEU SEQRES 10 B 360 ARG LEU PHE LEU GLY GLY TRP ASN ALA VAL PHE ALA ILE SEQRES 11 B 360 ALA GLU GLU THR ALA ARG GLY THR GLN ARG SER ILE GLN SEQRES 12 B 360 VAL PHE ASP GLN GLN GLY VAL ALA VAL HIS LYS VAL PHE SEQRES 13 B 360 LEU ALA GLU ALA SER ASP VAL ARG ALA TRP GLU PRO LEU SEQRES 14 B 360 VAL GLU ARG LEU ARG ALA ALA GLU GLN ASP ALA VAL LEU SEQRES 15 B 360 ALA LEU HIS GLU PRO ARG ALA PRO ALA ALA ALA LEU VAL SEQRES 16 B 360 ASP ALA GLN ILE ASP ALA ALA ALA LEU ARG GLU GLY TRP SEQRES 17 B 360 ALA ALA LEU LYS ASP THR HIS HIS PHE HIS ALA LEU LEU SEQRES 18 B 360 LYS LYS HIS GLY ALA GLN ARG THR GLN ALA LEU ARG LEU SEQRES 19 B 360 ALA GLY GLY GLU TRP ALA GLU ARG LEU ASP ASN GLY ASP SEQRES 20 B 360 LEU ALA LYS LEU PHE GLU ALA ALA ALA GLU SER GLY LEU SEQRES 21 B 360 PRO ILE MET VAL PHE VAL GLY ASN ALA HIS CYS ILE GLN SEQRES 22 B 360 ILE HIS THR GLY PRO VAL CYS ASN LEU LYS TRP LEU ASP SEQRES 23 B 360 ASP TRP PHE ASN VAL LEU ASP PRO GLU PHE ASN LEU HIS SEQRES 24 B 360 LEU LYS THR THR GLY ILE ALA GLU LEU TRP ARG VAL ARG SEQRES 25 B 360 LYS PRO SER THR ASP GLY ILE VAL THR SER TRP GLU ALA SEQRES 26 B 360 PHE ASP PRO ASP GLY GLU LEU ILE VAL GLN LEU PHE GLY SEQRES 27 B 360 ALA ARG LYS PRO GLY GLU PRO GLU ARG ASP ASP TRP ARG SEQRES 28 B 360 GLU LEU ALA GLU SER PHE LYS ALA LEU HET HEM A 400 43 HET HEM B 400 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *474(H2 O) HELIX 1 1 SER A 10 ARG A 25 1 16 HELIX 2 2 ARG A 29 LEU A 37 1 9 HELIX 3 3 SER A 40 SER A 47 1 8 HELIX 4 4 ASP A 59 LEU A 67 1 9 HELIX 5 5 GLY A 68 LEU A 70 5 3 HELIX 6 6 ASP A 156 ARG A 158 5 3 HELIX 7 7 ALA A 159 ARG A 168 1 10 HELIX 8 8 VAL A 189 ILE A 193 5 5 HELIX 9 9 ASP A 194 LEU A 205 1 12 HELIX 10 10 ASP A 207 HIS A 209 5 3 HELIX 11 11 HIS A 210 GLY A 219 1 10 HELIX 12 12 GLN A 221 GLY A 230 1 10 HELIX 13 13 GLY A 240 GLY A 253 1 14 HELIX 14 14 THR A 297 ILE A 299 5 3 HELIX 15 15 ARG A 341 SER A 350 1 10 HELIX 16 16 TYR B 15 ARG B 25 1 11 HELIX 17 17 ARG B 29 LEU B 37 1 9 HELIX 18 18 SER B 40 SER B 47 1 8 HELIX 19 19 ASP B 59 LEU B 67 1 9 HELIX 20 20 GLY B 68 LEU B 70 5 3 HELIX 21 21 ASP B 156 ARG B 158 5 3 HELIX 22 22 ALA B 159 ARG B 168 1 10 HELIX 23 23 VAL B 189 ILE B 193 5 5 HELIX 24 24 ASP B 194 ALA B 204 1 11 HELIX 25 25 ASP B 207 HIS B 209 5 3 HELIX 26 26 HIS B 210 GLY B 219 1 10 HELIX 27 27 GLN B 221 GLY B 230 1 10 HELIX 28 28 GLY B 240 GLY B 253 1 14 HELIX 29 29 THR B 297 ILE B 299 5 3 HELIX 30 30 ARG B 341 PHE B 351 1 11 SHEET 1 A 9 ALA A 53 LEU A 56 0 SHEET 2 A 9 TRP A 118 GLU A 127 -1 O ALA A 123 N VAL A 54 SHEET 3 A 9 THR A 132 ASP A 140 -1 O PHE A 139 N ALA A 120 SHEET 4 A 9 ALA A 145 LEU A 151 -1 O VAL A 146 N VAL A 138 SHEET 5 A 9 PRO A 72 ARG A 78 -1 N MET A 74 O PHE A 150 SHEET 6 A 9 CYS A 82 PRO A 89 -1 O ARG A 86 N ALA A 75 SHEET 7 A 9 PHE A 290 LYS A 295 -1 O ASN A 291 N GLU A 85 SHEET 8 A 9 TRP A 282 ASP A 287 -1 N PHE A 283 O LEU A 294 SHEET 9 A 9 LEU A 276 LEU A 279 -1 N LEU A 279 O TRP A 282 SHEET 1 B 9 VAL A 93 VAL A 95 0 SHEET 2 B 9 MET A 101 VAL A 104 -1 O LEU A 103 N THR A 94 SHEET 3 B 9 LEU A 111 PHE A 114 -1 O LEU A 113 N GLY A 102 SHEET 4 B 9 CYS A 265 GLY A 271 -1 O ILE A 266 N ARG A 112 SHEET 5 B 9 ILE A 256 ASN A 262 -1 N ILE A 256 O GLY A 271 SHEET 6 B 9 LEU A 326 GLY A 332 -1 O GLN A 329 N PHE A 259 SHEET 7 B 9 VAL A 314 PHE A 320 -1 N ALA A 319 O ILE A 327 SHEET 8 B 9 GLU A 301 LYS A 307 -1 N VAL A 305 O SER A 316 SHEET 9 B 9 ALA A 234 LEU A 237 -1 N LEU A 237 O LEU A 302 SHEET 1 C 9 ALA B 53 LEU B 56 0 SHEET 2 C 9 TRP B 118 GLU B 126 -1 O ALA B 123 N VAL B 54 SHEET 3 C 9 GLN B 133 ASP B 140 -1 O GLN B 133 N GLU B 126 SHEET 4 C 9 ALA B 145 LEU B 151 -1 O VAL B 149 N ILE B 136 SHEET 5 C 9 PRO B 72 ARG B 78 -1 N LEU B 76 O LYS B 148 SHEET 6 C 9 CYS B 82 PRO B 89 -1 O HIS B 84 N THR B 77 SHEET 7 C 9 PHE B 290 LYS B 295 -1 O ASN B 291 N GLU B 85 SHEET 8 C 9 TRP B 282 ASP B 287 -1 N PHE B 283 O LEU B 294 SHEET 9 C 9 LEU B 276 LEU B 279 -1 N LEU B 279 O TRP B 282 SHEET 1 D 9 VAL B 93 VAL B 95 0 SHEET 2 D 9 MET B 101 VAL B 104 -1 O LEU B 103 N THR B 94 SHEET 3 D 9 LEU B 111 PHE B 114 -1 O LEU B 113 N GLY B 102 SHEET 4 D 9 CYS B 265 GLY B 271 -1 O ILE B 266 N ARG B 112 SHEET 5 D 9 ILE B 256 ASN B 262 -1 N VAL B 260 O GLN B 267 SHEET 6 D 9 LEU B 326 GLY B 332 -1 O GLN B 329 N PHE B 259 SHEET 7 D 9 VAL B 314 PHE B 320 -1 N ALA B 319 O ILE B 327 SHEET 8 D 9 GLU B 301 LYS B 307 -1 N VAL B 305 O SER B 316 SHEET 9 D 9 ALA B 234 LEU B 237 -1 N LEU B 237 O LEU B 302 LINK NE2 HIS A 209 FE HEM A 400 1555 1555 2.32 LINK FE HEM A 400 O HOH A 689 1555 1555 2.76 LINK NE2 HIS B 209 FE HEM B 400 1555 1555 2.40 LINK FE HEM B 400 O HOH B 558 1555 1555 2.34 CISPEP 1 ARG A 91 GLU A 92 0 3.50 CISPEP 2 ARG B 91 GLU B 92 0 4.96 CISPEP 3 ALA B 129 ARG B 130 0 -11.89 SITE 1 AC1 14 LEU A 103 ARG A 112 PHE A 114 THR A 208 SITE 2 AC1 14 HIS A 209 ARG A 222 PHE A 259 LYS A 307 SITE 3 AC1 14 GLN A 329 PHE A 331 ARG A 334 PRO A 336 SITE 4 AC1 14 HOH A 602 HOH A 689 SITE 1 AC2 14 LEU B 103 ARG B 112 THR B 208 HIS B 209 SITE 2 AC2 14 ARG B 222 MET B 257 PHE B 259 LYS B 307 SITE 3 AC2 14 GLN B 329 PHE B 331 ARG B 334 HOH B 534 SITE 4 AC2 14 HOH B 558 HOH B 690 CRYST1 187.000 187.000 42.600 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023474 0.00000