data_4MFR # _entry.id 4MFR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MFR pdb_00004mfr 10.2210/pdb4mfr/pdb RCSB RCSB081854 ? ? WWPDB D_1000081854 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4ILU _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4MFR _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-08-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kaur, G.' 1 'Thakur, K.G.' 2 # _citation.id primary _citation.title ;Crystal structure of Mycobacterium tuberculosis CarD, an essential RNA polymerase binding protein, reveals a quasidomain-swapped dimeric structural architecture. ; _citation.journal_abbrev Proteins _citation.journal_volume 82 _citation.page_first 879 _citation.page_last 884 _citation.year 2014 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 1097-0134 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24115125 _citation.pdbx_database_id_DOI 10.1002/prot.24419 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kaur, G.' 1 ? primary 'Dutta, D.' 2 ? primary 'Thakur, K.G.' 3 ? # _cell.length_a 93.248 _cell.length_b 93.248 _cell.length_c 87.832 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4MFR _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4MFR _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA polymerase-binding transcription factor CarD' 18988.516 1 ? S162A ? ? 2 non-polymer syn 'IODIDE ION' 126.904 16 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 13 ? ? ? ? 5 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA AALEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA AALEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 PHE n 1 4 LYS n 1 5 VAL n 1 6 GLY n 1 7 ASP n 1 8 THR n 1 9 VAL n 1 10 VAL n 1 11 TYR n 1 12 PRO n 1 13 HIS n 1 14 HIS n 1 15 GLY n 1 16 ALA n 1 17 ALA n 1 18 LEU n 1 19 VAL n 1 20 GLU n 1 21 ALA n 1 22 ILE n 1 23 GLU n 1 24 THR n 1 25 ARG n 1 26 THR n 1 27 ILE n 1 28 LYS n 1 29 GLY n 1 30 GLU n 1 31 GLN n 1 32 LYS n 1 33 GLU n 1 34 TYR n 1 35 LEU n 1 36 VAL n 1 37 LEU n 1 38 LYS n 1 39 VAL n 1 40 ALA n 1 41 GLN n 1 42 GLY n 1 43 ASP n 1 44 LEU n 1 45 THR n 1 46 VAL n 1 47 ARG n 1 48 VAL n 1 49 PRO n 1 50 ALA n 1 51 GLU n 1 52 ASN n 1 53 ALA n 1 54 GLU n 1 55 TYR n 1 56 VAL n 1 57 GLY n 1 58 VAL n 1 59 ARG n 1 60 ASP n 1 61 VAL n 1 62 VAL n 1 63 GLY n 1 64 GLN n 1 65 GLU n 1 66 GLY n 1 67 LEU n 1 68 ASP n 1 69 LYS n 1 70 VAL n 1 71 PHE n 1 72 GLN n 1 73 VAL n 1 74 LEU n 1 75 ARG n 1 76 ALA n 1 77 PRO n 1 78 HIS n 1 79 THR n 1 80 GLU n 1 81 GLU n 1 82 PRO n 1 83 THR n 1 84 ASN n 1 85 TRP n 1 86 SER n 1 87 ARG n 1 88 ARG n 1 89 TYR n 1 90 LYS n 1 91 ALA n 1 92 ASN n 1 93 LEU n 1 94 GLU n 1 95 LYS n 1 96 LEU n 1 97 ALA n 1 98 SER n 1 99 GLY n 1 100 ASP n 1 101 VAL n 1 102 ASN n 1 103 LYS n 1 104 VAL n 1 105 ALA n 1 106 GLU n 1 107 VAL n 1 108 VAL n 1 109 ARG n 1 110 ASP n 1 111 LEU n 1 112 TRP n 1 113 ARG n 1 114 ARG n 1 115 ASP n 1 116 GLN n 1 117 GLU n 1 118 ARG n 1 119 GLY n 1 120 LEU n 1 121 SER n 1 122 ALA n 1 123 GLY n 1 124 GLU n 1 125 LYS n 1 126 ARG n 1 127 MET n 1 128 LEU n 1 129 ALA n 1 130 LYS n 1 131 ALA n 1 132 ARG n 1 133 GLN n 1 134 ILE n 1 135 LEU n 1 136 VAL n 1 137 GLY n 1 138 GLU n 1 139 LEU n 1 140 ALA n 1 141 LEU n 1 142 ALA n 1 143 GLU n 1 144 SER n 1 145 THR n 1 146 ASP n 1 147 ASP n 1 148 ALA n 1 149 LYS n 1 150 ALA n 1 151 GLU n 1 152 THR n 1 153 ILE n 1 154 LEU n 1 155 ASP n 1 156 GLU n 1 157 VAL n 1 158 LEU n 1 159 ALA n 1 160 ALA n 1 161 ALA n 1 162 ALA n 1 163 LEU n 1 164 GLU n 1 165 HIS n 1 166 HIS n 1 167 HIS n 1 168 HIS n 1 169 HIS n 1 170 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'carD, Rv3583c, MT3689' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CARD_MYCTU _struct_ref.pdbx_db_accession O53568 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA AS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MFR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O53568 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MFR ALA A 162 ? UNP O53568 SER 162 'engineered mutation' 162 1 1 4MFR LEU A 163 ? UNP O53568 ? ? 'expression tag' 163 2 1 4MFR GLU A 164 ? UNP O53568 ? ? 'expression tag' 164 3 1 4MFR HIS A 165 ? UNP O53568 ? ? 'expression tag' 165 4 1 4MFR HIS A 166 ? UNP O53568 ? ? 'expression tag' 166 5 1 4MFR HIS A 167 ? UNP O53568 ? ? 'expression tag' 167 6 1 4MFR HIS A 168 ? UNP O53568 ? ? 'expression tag' 168 7 1 4MFR HIS A 169 ? UNP O53568 ? ? 'expression tag' 169 8 1 4MFR HIS A 170 ? UNP O53568 ? ? 'expression tag' 170 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4MFR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.710 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 5.03 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 75.53 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1.5M Lithium Sulphate, 0.1M HEPES pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2012-04-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4MFR _reflns.observed_criterion_sigma_F 2.5 _reflns.observed_criterion_sigma_I 4.2 _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 52.73 _reflns.number_all ? _reflns.number_obs 27954 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.131 _reflns.pdbx_Rsym_value 0.122 _reflns.pdbx_netI_over_sigmaI 19.4 _reflns.B_iso_Wilson_estimate 48.903 _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.64 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.655 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.number_unique_all 1991 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MFR _refine.ls_d_res_high 2.5 _refine.ls_d_res_low 41.182 _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 25575 _refine.ls_number_reflns_all 25575 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS FRIEDEL PAIRS I_PLUS/MINUS COLUMNS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2174 _refine.ls_R_factor_R_work 0.2146 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2429 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2547 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 39.2576 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 184.500 _refine.B_iso_min 12.410 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4MFR _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1290 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 87 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1408 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 41.182 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.015 ? ? ? ? 'X-RAY DIFFRACTION' f_angle_deg 1.507 ? ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.819 ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.number_reflns_R_work _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 2.5001 2.5482 1298 147 0.3087 0.3712 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.5482 2.6002 1277 142 0.3108 0.3576 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.6002 2.6567 1290 118 0.2799 0.2817 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.6567 2.7185 1243 165 0.2814 0.2903 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.7185 2.7864 1292 143 0.2776 0.3258 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.7864 2.8618 1282 144 0.2549 0.2615 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.8618 2.9460 1266 148 0.2402 0.2860 . . . 18 . . . . 'X-RAY DIFFRACTION' 2.9460 3.0410 1286 138 0.2327 0.2824 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.0410 3.1497 1266 140 0.2185 0.2593 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.1497 3.2757 1309 142 0.2302 0.2748 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.2757 3.4247 1258 146 0.2064 0.2438 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.4247 3.6052 1289 139 0.1807 0.1871 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.6052 3.8309 1292 133 0.1762 0.2124 . . . 18 . . . . 'X-RAY DIFFRACTION' 3.8309 4.1265 1268 153 0.1692 0.2040 . . . 18 . . . . 'X-RAY DIFFRACTION' 4.1265 4.5412 1271 157 0.1633 0.1675 . . . 18 . . . . 'X-RAY DIFFRACTION' 4.5412 5.1973 1268 145 0.1713 0.2371 . . . 18 . . . . 'X-RAY DIFFRACTION' 5.1973 6.5438 1309 110 0.2291 0.2120 . . . 18 . . . . 'X-RAY DIFFRACTION' 6.5438 41.1871 1264 137 0.2523 0.2709 . . . 18 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4MFR _struct.title 'Crystal structure of Mycobacterium tuberculosis CarD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MFR _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Tudor-like domain, Five helical bundle, Transcriptional regulator, RNA polymerase, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 3 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 4 ? AA N N 4 ? BA N N 4 ? CA N N 4 ? DA N N 4 ? EA N N 4 ? FA N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 41 ? ASP A 43 ? GLN A 41 ASP A 43 5 ? 3 HELX_P HELX_P2 2 GLU A 51 ? ALA A 53 ? GLU A 51 ALA A 53 5 ? 3 HELX_P HELX_P3 3 VAL A 62 ? ALA A 76 ? VAL A 62 ALA A 76 1 ? 15 HELX_P HELX_P4 4 ASN A 84 ? SER A 98 ? ASN A 84 SER A 98 1 ? 15 HELX_P HELX_P5 5 ASP A 100 ? ARG A 118 ? ASP A 100 ARG A 118 1 ? 19 HELX_P HELX_P6 6 SER A 121 ? ALA A 140 ? SER A 121 ALA A 140 1 ? 20 HELX_P HELX_P7 7 LYS A 149 ? GLU A 164 ? LYS A 149 GLU A 164 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 41 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 41 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 42 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 42 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.40 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 17 ? ILE A 27 ? ALA A 17 ILE A 27 A 2 GLU A 30 ? VAL A 39 ? GLU A 30 VAL A 39 A 3 LEU A 44 ? PRO A 49 ? LEU A 44 PRO A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 27 ? N ILE A 27 O GLU A 30 ? O GLU A 30 A 2 3 N LEU A 37 ? N LEU A 37 O VAL A 46 ? O VAL A 46 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 209 ? 2 'BINDING SITE FOR RESIDUE IOD A 209' AC2 Software A IOD 212 ? 1 'BINDING SITE FOR RESIDUE IOD A 212' AC3 Software A IOD 216 ? 2 'BINDING SITE FOR RESIDUE IOD A 216' AC4 Software A GOL 217 ? 4 'BINDING SITE FOR RESIDUE GOL A 217' AC5 Software A SO4 218 ? 3 'BINDING SITE FOR RESIDUE SO4 A 218' AC6 Software A SO4 219 ? 3 'BINDING SITE FOR RESIDUE SO4 A 219' AC7 Software A SO4 220 ? 2 'BINDING SITE FOR RESIDUE SO4 A 220' AC8 Software A SO4 221 ? 3 'BINDING SITE FOR RESIDUE SO4 A 221' AC9 Software A SO4 222 ? 4 'BINDING SITE FOR RESIDUE SO4 A 222' BC1 Software A SO4 223 ? 6 'BINDING SITE FOR RESIDUE SO4 A 223' BC2 Software A SO4 224 ? 7 'BINDING SITE FOR RESIDUE SO4 A 224' BC3 Software A SO4 225 ? 2 'BINDING SITE FOR RESIDUE SO4 A 225' BC4 Software A SO4 226 ? 3 'BINDING SITE FOR RESIDUE SO4 A 226' BC5 Software A SO4 227 ? 5 'BINDING SITE FOR RESIDUE SO4 A 227' BC6 Software A SO4 228 ? 4 'BINDING SITE FOR RESIDUE SO4 A 228' BC7 Software A SO4 229 ? 4 'BINDING SITE FOR RESIDUE SO4 A 229' BC8 Software A SO4 230 ? 3 'BINDING SITE FOR RESIDUE SO4 A 230' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 PRO A 82 ? PRO A 82 . ? 1_555 ? 2 AC1 2 SO4 CA . ? SO4 A 228 . ? 1_555 ? 3 AC2 1 GLY A 57 ? GLY A 57 . ? 1_555 ? 4 AC3 2 LYS A 32 ? LYS A 32 . ? 1_555 ? 5 AC3 2 GLU A 33 ? GLU A 33 . ? 1_555 ? 6 AC4 4 ARG A 59 ? ARG A 59 . ? 1_555 ? 7 AC4 4 ASP A 60 ? ASP A 60 . ? 1_555 ? 8 AC4 4 VAL A 61 ? VAL A 61 . ? 1_555 ? 9 AC4 4 ALA A 142 ? ALA A 142 . ? 1_555 ? 10 AC5 3 GLU A 65 ? GLU A 65 . ? 1_555 ? 11 AC5 3 LYS A 69 ? LYS A 69 . ? 1_555 ? 12 AC5 3 HOH FA . ? HOH A 310 . ? 1_555 ? 13 AC6 3 HIS A 168 ? HIS A 168 . ? 1_555 ? 14 AC6 3 HIS A 169 ? HIS A 169 . ? 1_555 ? 15 AC6 3 HIS A 170 ? HIS A 170 . ? 1_555 ? 16 AC7 2 ASP A 60 ? ASP A 60 . ? 1_555 ? 17 AC7 2 VAL A 61 ? VAL A 61 . ? 1_555 ? 18 AC8 3 ALA A 76 ? ALA A 76 . ? 1_555 ? 19 AC8 3 PRO A 77 ? PRO A 77 . ? 1_555 ? 20 AC8 3 HIS A 78 ? HIS A 78 . ? 1_555 ? 21 AC9 4 ILE A 2 ? ILE A 2 . ? 8_665 ? 22 AC9 4 PHE A 3 ? PHE A 3 . ? 8_665 ? 23 AC9 4 GLU A 33 ? GLU A 33 . ? 1_555 ? 24 AC9 4 ALA A 50 ? ALA A 50 . ? 1_555 ? 25 BC1 6 GLU A 23 ? GLU A 23 . ? 6_565 ? 26 BC1 6 ARG A 25 ? ARG A 25 . ? 6_565 ? 27 BC1 6 ARG A 47 ? ARG A 47 . ? 6_565 ? 28 BC1 6 ASN A 84 ? ASN A 84 . ? 1_555 ? 29 BC1 6 SER A 86 ? SER A 86 . ? 1_555 ? 30 BC1 6 ARG A 87 ? ARG A 87 . ? 1_555 ? 31 BC2 7 ALA A 21 ? ALA A 21 . ? 6_565 ? 32 BC2 7 ILE A 22 ? ILE A 22 . ? 6_565 ? 33 BC2 7 GLU A 23 ? GLU A 23 . ? 6_565 ? 34 BC2 7 THR A 83 ? THR A 83 . ? 1_555 ? 35 BC2 7 ASN A 84 ? ASN A 84 . ? 1_555 ? 36 BC2 7 TRP A 85 ? TRP A 85 . ? 1_555 ? 37 BC2 7 ARG A 88 ? ARG A 88 . ? 1_555 ? 38 BC3 2 GLN A 133 ? GLN A 133 . ? 1_555 ? 39 BC3 2 GLU A 151 ? GLU A 151 . ? 1_555 ? 40 BC4 3 LYS A 130 ? LYS A 130 . ? 1_555 ? 41 BC4 3 GLN A 133 ? GLN A 133 . ? 1_555 ? 42 BC4 3 ILE A 134 ? ILE A 134 . ? 1_555 ? 43 BC5 5 LEU A 128 ? LEU A 128 . ? 1_555 ? 44 BC5 5 ALA A 129 ? ALA A 129 . ? 1_555 ? 45 BC5 5 ARG A 132 ? ARG A 132 . ? 1_555 ? 46 BC5 5 HOH FA . ? HOH A 321 . ? 1_555 ? 47 BC5 5 HOH FA . ? HOH A 330 . ? 1_555 ? 48 BC6 4 GLU A 81 ? GLU A 81 . ? 1_555 ? 49 BC6 4 THR A 83 ? THR A 83 . ? 1_555 ? 50 BC6 4 ARG A 87 ? ARG A 87 . ? 1_555 ? 51 BC6 4 IOD J . ? IOD A 209 . ? 1_555 ? 52 BC7 4 HIS A 14 ? HIS A 14 . ? 1_555 ? 53 BC7 4 GLU A 156 ? GLU A 156 . ? 1_555 ? 54 BC7 4 VAL A 157 ? VAL A 157 . ? 1_555 ? 55 BC7 4 ALA A 160 ? ALA A 160 . ? 1_555 ? 56 BC8 3 LYS A 4 ? LYS A 4 . ? 1_555 ? 57 BC8 3 VAL A 5 ? VAL A 5 . ? 1_555 ? 58 BC8 3 ILE A 22 ? ILE A 22 . ? 8_665 ? # _atom_sites.entry_id 4MFR _atom_sites.fract_transf_matrix[1][1] 0.010724 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010724 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 TRP 112 112 112 TRP TRP A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 MET 127 127 127 MET MET A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 GLU 143 143 ? ? ? A . n A 1 144 SER 144 144 ? ? ? A . n A 1 145 THR 145 145 ? ? ? A . n A 1 146 ASP 146 146 ? ? ? A . n A 1 147 ASP 147 147 ? ? ? A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 HIS 167 167 167 HIS HIS A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 HIS 169 169 169 HIS HIS A . n A 1 170 HIS 170 170 170 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 201 2 IOD IOD A . C 2 IOD 1 202 3 IOD IOD A . D 2 IOD 1 203 4 IOD IOD A . E 2 IOD 1 204 5 IOD IOD A . F 2 IOD 1 205 6 IOD IOD A . G 2 IOD 1 206 7 IOD IOD A . H 2 IOD 1 207 8 IOD IOD A . I 2 IOD 1 208 9 IOD IOD A . J 2 IOD 1 209 10 IOD IOD A . K 2 IOD 1 210 11 IOD IOD A . L 2 IOD 1 211 12 IOD IOD A . M 2 IOD 1 212 13 IOD IOD A . N 2 IOD 1 213 14 IOD IOD A . O 2 IOD 1 214 3 IOD IOD A . P 2 IOD 1 215 4 IOD IOD A . Q 2 IOD 1 216 5 IOD IOD A . R 3 GOL 1 217 1 GOL GOL A . S 4 SO4 1 218 1 SO4 SO4 A . T 4 SO4 1 219 2 SO4 SO4 A . U 4 SO4 1 220 6 SO4 SO4 A . V 4 SO4 1 221 8 SO4 SO4 A . W 4 SO4 1 222 9 SO4 SO4 A . X 4 SO4 1 223 10 SO4 SO4 A . Y 4 SO4 1 224 11 SO4 SO4 A . Z 4 SO4 1 225 13 SO4 SO4 A . AA 4 SO4 1 226 14 SO4 SO4 A . BA 4 SO4 1 227 15 SO4 SO4 A . CA 4 SO4 1 228 16 SO4 SO4 A . DA 4 SO4 1 229 17 SO4 SO4 A . EA 4 SO4 1 230 19 SO4 SO4 A . FA 5 HOH 1 301 1 HOH HOH A . FA 5 HOH 2 302 2 HOH HOH A . FA 5 HOH 3 303 3 HOH HOH A . FA 5 HOH 4 304 4 HOH HOH A . FA 5 HOH 5 305 5 HOH HOH A . FA 5 HOH 6 306 6 HOH HOH A . FA 5 HOH 7 307 7 HOH HOH A . FA 5 HOH 8 308 8 HOH HOH A . FA 5 HOH 9 309 9 HOH HOH A . FA 5 HOH 10 310 10 HOH HOH A . FA 5 HOH 11 311 11 HOH HOH A . FA 5 HOH 12 312 12 HOH HOH A . FA 5 HOH 13 313 13 HOH HOH A . FA 5 HOH 14 314 14 HOH HOH A . FA 5 HOH 15 315 15 HOH HOH A . FA 5 HOH 16 316 17 HOH HOH A . FA 5 HOH 17 317 19 HOH HOH A . FA 5 HOH 18 318 20 HOH HOH A . FA 5 HOH 19 319 21 HOH HOH A . FA 5 HOH 20 320 22 HOH HOH A . FA 5 HOH 21 321 23 HOH HOH A . FA 5 HOH 22 322 24 HOH HOH A . FA 5 HOH 23 323 25 HOH HOH A . FA 5 HOH 24 324 26 HOH HOH A . FA 5 HOH 25 325 27 HOH HOH A . FA 5 HOH 26 326 28 HOH HOH A . FA 5 HOH 27 327 29 HOH HOH A . FA 5 HOH 28 328 30 HOH HOH A . FA 5 HOH 29 329 31 HOH HOH A . FA 5 HOH 30 330 32 HOH HOH A . FA 5 HOH 31 331 35 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16150 ? 1 MORE -385 ? 1 'SSA (A^2)' 16160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 93.2480000000 -1.0000000000 0.0000000000 0.0000000000 93.2480000000 0.0000000000 0.0000000000 -1.0000000000 43.9160000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-06 2 'Structure model' 1 1 2022-08-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' struct_ref_seq_dif 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation.year' 6 2 'Structure model' '_database_2.pdbx_DOI' 7 2 'Structure model' '_database_2.pdbx_database_accession' 8 2 'Structure model' '_struct_ref_seq_dif.details' 9 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.500 _diffrn_reflns.pdbx_d_res_low 93.248 _diffrn_reflns.pdbx_number_obs 13977 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.122 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 6.10 _diffrn_reflns.pdbx_redundancy 14.20 _diffrn_reflns.pdbx_percent_possible_obs 100.00 _diffrn_reflns.number 198029 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 7.91 46.62 ? ? 0.029 0.029 ? 12.10 99.60 1 5.59 7.91 ? ? 0.054 0.054 ? 13.70 100.00 1 4.56 5.59 ? ? 0.062 0.062 ? 14.00 100.00 1 3.95 4.56 ? ? 0.058 0.058 ? 14.20 100.00 1 3.54 3.95 ? ? 0.078 0.078 ? 14.30 100.00 1 3.23 3.54 ? ? 0.122 0.122 ? 14.30 100.00 1 2.99 3.23 ? ? 0.206 0.206 ? 14.30 100.00 1 2.80 2.99 ? ? 0.338 0.338 ? 14.40 100.00 1 2.64 2.80 ? ? 0.483 0.483 ? 14.30 100.00 1 2.50 2.64 ? ? 0.655 0.655 ? 14.30 100.00 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345dtb . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 143 ? A GLU 143 3 1 Y 1 A SER 144 ? A SER 144 4 1 Y 1 A THR 145 ? A THR 145 5 1 Y 1 A ASP 146 ? A ASP 146 6 1 Y 1 A ASP 147 ? A ASP 147 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 GLYCEROL GOL 4 'SULFATE ION' SO4 5 water HOH #