HEADER RNA 28-AUG-13 4MGN TITLE CO-CRYSTAL STRUCTURE OF THE G. KAUSTOPHILUS GLYQS T BOX RIBOSWITCH TITLE 2 STEM I IN COMPLEX WITH TRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYQS T BOX RIBOSWITCH; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRNA-GLYCINE; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED. OCCURS NATURALLY IN GEOBACILLUS SOURCE 4 KAUSTOPHILUS; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: IN VITRO TRANSCRIBED. OCCURS NATURALLY IN GEOBACILLUS SOURCE 8 KAUSTOPHILUS KEYWDS RNA-RNA COMPLEX, BASE STACKING, T-LOOP, RNA BINDING, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.C.GRIGG,A.KE REVDAT 3 20-SEP-23 4MGN 1 REMARK LINK REVDAT 2 27-NOV-13 4MGN 1 JRNL REVDAT 1 23-OCT-13 4MGN 0 JRNL AUTH J.C.GRIGG,A.KE JRNL TITL STRUCTURAL DETERMINANTS FOR GEOMETRY AND INFORMATION JRNL TITL 2 DECODING OF TRNA BY T BOX LEADER RNA. JRNL REF STRUCTURE V. 21 2025 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24095061 JRNL DOI 10.1016/J.STR.2013.09.001 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 25268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2959 - 8.3674 0.98 1360 153 0.1706 0.2178 REMARK 3 2 8.3674 - 6.6492 1.00 1321 147 0.2085 0.2291 REMARK 3 3 6.6492 - 5.8110 1.00 1317 146 0.2229 0.2494 REMARK 3 4 5.8110 - 5.2807 1.00 1313 142 0.2025 0.2744 REMARK 3 5 5.2807 - 4.9028 1.00 1281 143 0.2144 0.2321 REMARK 3 6 4.9028 - 4.6140 1.00 1289 148 0.2480 0.2822 REMARK 3 7 4.6140 - 4.3832 0.99 1276 137 0.2573 0.3099 REMARK 3 8 4.3832 - 4.1926 0.99 1283 139 0.2687 0.3519 REMARK 3 9 4.1926 - 4.0313 0.99 1258 134 0.2750 0.3382 REMARK 3 10 4.0313 - 3.8923 0.99 1268 134 0.2664 0.3028 REMARK 3 11 3.8923 - 3.7706 0.98 1264 138 0.2659 0.3250 REMARK 3 12 3.7706 - 3.6629 0.98 1250 141 0.3057 0.3581 REMARK 3 13 3.6629 - 3.5665 0.97 1244 135 0.3210 0.3602 REMARK 3 14 3.5665 - 3.4796 0.97 1243 138 0.3313 0.3621 REMARK 3 15 3.4796 - 3.4005 0.95 1195 132 0.3347 0.3443 REMARK 3 16 3.4005 - 3.3281 0.96 1205 135 0.3413 0.3437 REMARK 3 17 3.3281 - 3.2616 0.94 1213 136 0.3402 0.3719 REMARK 3 18 3.2616 - 3.2001 0.94 1176 134 0.3420 0.3608 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 141.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 7636 REMARK 3 ANGLE : 0.458 11904 REMARK 3 CHIRALITY : 0.019 1581 REMARK 3 PLANARITY : 0.002 317 REMARK 3 DIHEDRAL : 11.951 3800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS GROUP : 2 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000081886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 MONOCHROMATOR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26207 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 4JRC AND 4MGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM NACL, 20MM MGCL2, 40MM SODIUM REMARK 280 CACODYLATE, 12MM SPERMINE, 10% 2-METHYL-1,3 PROPANEDIOL, PH 7.0, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.71050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.71050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.41900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.59100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.41900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.59100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.71050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.41900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.59100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.71050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.41900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.59100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C B 73 REMARK 465 C B 74 REMARK 465 A B 75 REMARK 465 C D 74 REMARK 465 A D 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' G B 15 N2 G B 58 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 11 O3' - P - O5' ANGL. DEV. = -18.0 DEGREES REMARK 500 G A 11 O3' - P - OP1 ANGL. DEV. = 14.8 DEGREES REMARK 500 C B 2 O3' - P - O5' ANGL. DEV. = -19.3 DEGREES REMARK 500 C B 2 O3' - P - OP2 ANGL. DEV. = 20.4 DEGREES REMARK 500 C D 2 O3' - P - O5' ANGL. DEV. = -15.0 DEGREES REMARK 500 C D 2 O3' - P - OP2 ANGL. DEV. = 49.7 DEGREES REMARK 500 C D 2 O3' - P - OP1 ANGL. DEV. = -43.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 55 O6 REMARK 620 2 G A 56 O6 74.1 REMARK 620 3 C B 55 O2 84.2 154.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 55 O6 REMARK 620 2 G C 56 O6 75.6 REMARK 620 3 G C 62 O6 81.7 117.1 REMARK 620 4 C D 55 O2 85.2 153.6 76.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A D 25 O5' REMARK 620 2 C D 26 OP2 107.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U D 54 O4 REMARK 620 2 A D 57 OP2 86.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MGM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE IN VITRO TRANSCRIBED G. KAUSTOPHILUS TRNA- REMARK 900 GLY DBREF 4MGN A 10 95 PDB 4MGN 4MGN 10 95 DBREF 4MGN C 10 95 PDB 4MGN 4MGN 10 95 DBREF 4MGN B 1 75 PDB 4MGN 4MGN 1 75 DBREF 4MGN D 1 75 PDB 4MGN 4MGN 1 75 SEQRES 1 A 86 GTP G A A U C A A U A G U A SEQRES 2 A 86 G U U A A C C C U C U C U SEQRES 3 A 86 U C C G A A G C G A G C C SEQRES 4 A 86 G G G G G C G G U G G G A SEQRES 5 A 86 G C C C G G U G A A G A C SEQRES 6 A 86 G G U U A A U G A A A C G SEQRES 7 A 86 G C A G U U C C SEQRES 1 B 75 GTP C G G A A G U A G U U C SEQRES 2 B 75 A G U G G U A G A A C A C SEQRES 3 B 75 C A C C U U G C C A A G G SEQRES 4 B 75 U G G G G G U C G C G G G SEQRES 5 B 75 U U C G A G U C C C G U C SEQRES 6 B 75 U U C C G C U C C A SEQRES 1 C 86 GTP G A A U C A A U A G U A SEQRES 2 C 86 G U U A A C C C U C U C U SEQRES 3 C 86 U C C G A A G C G A G C C SEQRES 4 C 86 G G G G G C G G U G G G A SEQRES 5 C 86 G C C C G G U G A A G A C SEQRES 6 C 86 G G U U A A U G A A A C G SEQRES 7 C 86 G C A G U U C C SEQRES 1 D 75 GTP C G G A A G U A G U U C SEQRES 2 D 75 A G U G G U A G A A C A C SEQRES 3 D 75 C A C C U U G C C A A G G SEQRES 4 D 75 U G G G G G U C G C G G G SEQRES 5 D 75 U U C G A G U C C C G U C SEQRES 6 D 75 U U C C G C U C C A MODRES 4MGN GTP A 10 G GUANOSINE-5'-TRIPHOSPHATE MODRES 4MGN GTP B 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 4MGN GTP C 10 G GUANOSINE-5'-TRIPHOSPHATE MODRES 4MGN GTP D 1 G GUANOSINE-5'-TRIPHOSPHATE HET GTP A 10 32 HET GTP B 1 32 HET GTP C 10 32 HET GTP D 1 32 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG C 101 1 HET MG C 102 1 HET MG C 103 1 HET MG C 104 1 HET MG D 101 1 HET MG D 102 1 HET MG D 103 1 HET MG D 104 1 HET MG D 105 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 GTP 4(C10 H16 N5 O14 P3) FORMUL 5 MG 18(MG 2+) LINK O3' GTP A 10 P G A 11 1555 1555 1.59 LINK O3' GTP B 1 P C B 2 1555 1555 1.59 LINK O3' GTP C 10 P G C 11 1555 1555 1.59 LINK O3' GTP D 1 P C D 2 1555 1555 1.59 LINK O3' C A 47 MG MG A 103 1555 1555 2.46 LINK O6 G A 55 MG MG A 102 1555 1555 2.51 LINK O6 G A 56 MG MG A 102 1555 1555 3.00 LINK O6 G A 58 MG MG A 101 1555 1555 2.53 LINK OP2 G A 58 MG MG A 104 1555 1555 2.47 LINK MG MG A 102 O2 C B 55 1555 1555 2.83 LINK O6 G C 55 MG MG C 103 1555 1555 2.76 LINK O6 G C 56 MG MG C 103 1555 1555 2.95 LINK O6 G C 58 MG MG C 101 1555 1555 2.18 LINK O6 G C 62 MG MG C 103 1555 1555 2.70 LINK MG MG C 103 O2 C D 55 1555 1555 2.91 LINK OP2 U D 12 MG MG D 102 1555 1555 2.97 LINK O5' A D 25 MG MG D 104 1555 1555 2.91 LINK OP2 C D 26 MG MG D 104 1555 1555 2.11 LINK O4 U D 54 MG MG D 103 1555 1555 2.56 LINK OP2 A D 57 MG MG D 103 1555 1555 2.29 SITE 1 AC1 1 G A 58 SITE 1 AC2 4 G A 55 G A 56 G A 62 C B 55 SITE 1 AC3 5 C A 47 C A 48 G A 59 G A 60 SITE 2 AC3 5 G C 59 SITE 1 AC4 1 G A 58 SITE 1 AC5 2 GTP B 1 G B 70 SITE 1 AC6 2 G B 3 G B 4 SITE 1 AC7 3 U B 8 A B 9 U B 12 SITE 1 AC8 2 G B 41 G B 42 SITE 1 AC9 1 G C 58 SITE 1 BC1 1 G C 42 SITE 1 BC2 4 G C 55 G C 56 G C 62 C D 55 SITE 1 BC3 1 G C 50 SITE 1 BC4 3 A D 9 U D 11 U D 12 SITE 1 BC5 2 U D 54 A D 57 SITE 1 BC6 2 A D 25 C D 26 SITE 1 BC7 1 C D 26 CRYST1 92.838 205.182 161.421 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006195 0.00000 HETATM 1 PG GTP A 10 8.410 -33.514 11.875 1.00255.97 P HETATM 2 O1G GTP A 10 7.813 -33.276 10.508 1.00238.02 O HETATM 3 O2G GTP A 10 9.377 -34.672 11.809 1.00236.83 O HETATM 4 O3G GTP A 10 7.314 -33.823 12.866 1.00259.03 O HETATM 5 O3B GTP A 10 9.204 -32.187 12.322 1.00248.32 O HETATM 6 PB GTP A 10 8.514 -30.733 12.322 1.00261.70 P HETATM 7 O1B GTP A 10 7.808 -30.476 11.012 1.00250.42 O HETATM 8 O2B GTP A 10 7.546 -30.623 13.476 1.00257.02 O HETATM 9 O3A GTP A 10 9.730 -29.689 12.520 1.00253.83 O HETATM 10 PA GTP A 10 11.218 -29.877 11.912 1.00231.04 P HETATM 11 O1A GTP A 10 12.228 -29.507 12.971 1.00210.63 O HETATM 12 O2A GTP A 10 11.480 -31.280 11.419 1.00230.57 O HETATM 13 O5' GTP A 10 11.355 -28.842 10.686 1.00215.25 O HETATM 14 C5' GTP A 10 10.248 -28.363 9.957 1.00220.93 C HETATM 15 C4' GTP A 10 10.543 -28.574 8.477 1.00211.86 C HETATM 16 O4' GTP A 10 11.031 -29.879 8.235 1.00215.77 O HETATM 17 C3' GTP A 10 9.321 -28.465 7.591 1.00205.35 C HETATM 18 O3' GTP A 10 9.006 -27.132 7.280 1.00204.59 O HETATM 19 C2' GTP A 10 9.744 -29.249 6.368 1.00204.63 C HETATM 20 O2' GTP A 10 10.416 -28.409 5.459 1.00198.25 O HETATM 21 C1' GTP A 10 10.707 -30.290 6.918 1.00213.15 C HETATM 22 N9 GTP A 10 10.003 -31.587 6.945 1.00210.29 N HETATM 23 C8 GTP A 10 9.803 -32.384 8.042 1.00211.15 C HETATM 24 N7 GTP A 10 9.119 -33.486 7.656 1.00205.85 N HETATM 25 C5 GTP A 10 8.888 -33.411 6.327 1.00209.03 C HETATM 26 C6 GTP A 10 8.243 -34.261 5.436 1.00210.11 C HETATM 27 O6 GTP A 10 7.751 -35.316 5.834 1.00206.82 O HETATM 28 N1 GTP A 10 8.157 -33.917 4.102 1.00210.62 N HETATM 29 C2 GTP A 10 8.712 -32.732 3.662 1.00196.26 C HETATM 30 N2 GTP A 10 8.632 -32.394 2.378 1.00179.43 N HETATM 31 N3 GTP A 10 9.351 -31.895 4.553 1.00203.16 N HETATM 32 C4 GTP A 10 9.440 -32.224 5.865 1.00209.43 C