data_4MGT # _entry.id 4MGT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MGT pdb_00004mgt 10.2210/pdb4mgt/pdb NDB NA2712 ? ? RCSB RCSB081892 ? ? WWPDB D_1000081892 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4MG2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4MGT _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-08-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, B.' 1 'Gan, J.' 2 'Yang, C.G.' 3 # _citation.id primary _citation.title ;The complex structures of ALKBH2 mutants cross-linked to dsDNA reveal the conformational swing of β-hairpin ; _citation.journal_abbrev 'Sci China Chem' _citation.journal_volume 57 _citation.page_first 307 _citation.page_last 313 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country CN _citation.journal_id_ISSN 1674-7291 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1007/s11426-013-5029-z # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, B.' 1 ? primary 'Gan, J.' 2 ? primary 'Yang, C.G.' 3 ? # _cell.length_a 129.099 _cell.length_b 129.099 _cell.length_c 84.466 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4MGT _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 4MGT _symmetry.Int_Tables_number 182 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23238.545 1 1.14.11.33 R110A 'UNP residues 56-258' ? 2 polymer syn DNA1 4313.831 1 ? ? ? ? 3 polymer syn DNA2 3993.676 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, DNA oxidative demethylase ALKBH2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLG ; ;MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPW IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLG ; A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DA)(DC)(DA)(DG)(DT)(DG)(DA)(DG)(DA)(DC)(DA)' TCGACAGTGAGACA B ? 3 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(DC)(DT)(DC)(DA)(2YR)(DT)(DG)(DT)(DC)(DG)' TGTCTCAXTGTCG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 TRP n 1 4 ARG n 1 5 HIS n 1 6 ILE n 1 7 ARG n 1 8 ALA n 1 9 GLU n 1 10 GLY n 1 11 LEU n 1 12 ASP n 1 13 SER n 1 14 SER n 1 15 TYR n 1 16 THR n 1 17 VAL n 1 18 LEU n 1 19 PHE n 1 20 GLY n 1 21 LYS n 1 22 ALA n 1 23 GLU n 1 24 ALA n 1 25 ASP n 1 26 GLU n 1 27 ILE n 1 28 PHE n 1 29 GLN n 1 30 GLU n 1 31 LEU n 1 32 GLU n 1 33 LYS n 1 34 GLU n 1 35 VAL n 1 36 GLU n 1 37 TYR n 1 38 PHE n 1 39 THR n 1 40 GLY n 1 41 ALA n 1 42 LEU n 1 43 ALA n 1 44 ARG n 1 45 VAL n 1 46 GLN n 1 47 VAL n 1 48 PHE n 1 49 GLY n 1 50 LYS n 1 51 TRP n 1 52 HIS n 1 53 SER n 1 54 VAL n 1 55 PRO n 1 56 ALA n 1 57 LYS n 1 58 GLN n 1 59 ALA n 1 60 THR n 1 61 TYR n 1 62 GLY n 1 63 ASP n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 THR n 1 68 TYR n 1 69 THR n 1 70 PHE n 1 71 SER n 1 72 GLY n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 SER n 1 77 PRO n 1 78 LYS n 1 79 PRO n 1 80 TRP n 1 81 ILE n 1 82 PRO n 1 83 VAL n 1 84 LEU n 1 85 GLU n 1 86 ARG n 1 87 ILE n 1 88 ARG n 1 89 ASP n 1 90 HIS n 1 91 VAL n 1 92 SER n 1 93 GLY n 1 94 VAL n 1 95 THR n 1 96 GLY n 1 97 GLN n 1 98 THR n 1 99 PHE n 1 100 ASN n 1 101 PHE n 1 102 VAL n 1 103 LEU n 1 104 ILE n 1 105 ASN n 1 106 ARG n 1 107 TYR n 1 108 LYS n 1 109 ASP n 1 110 GLY n 1 111 SER n 1 112 ASP n 1 113 HIS n 1 114 ILE n 1 115 CYS n 1 116 GLU n 1 117 HIS n 1 118 ARG n 1 119 ASP n 1 120 ASP n 1 121 GLU n 1 122 ARG n 1 123 GLU n 1 124 LEU n 1 125 ALA n 1 126 PRO n 1 127 GLY n 1 128 SER n 1 129 PRO n 1 130 ILE n 1 131 ALA n 1 132 SER n 1 133 VAL n 1 134 SER n 1 135 PHE n 1 136 GLY n 1 137 ALA n 1 138 SER n 1 139 ARG n 1 140 ASP n 1 141 PHE n 1 142 VAL n 1 143 PHE n 1 144 ARG n 1 145 HIS n 1 146 LYS n 1 147 ASP n 1 148 SER n 1 149 ARG n 1 150 GLY n 1 151 LYS n 1 152 SER n 1 153 PRO n 1 154 SER n 1 155 ARG n 1 156 ARG n 1 157 VAL n 1 158 ALA n 1 159 VAL n 1 160 VAL n 1 161 ARG n 1 162 LEU n 1 163 PRO n 1 164 LEU n 1 165 ALA n 1 166 HIS n 1 167 GLY n 1 168 SER n 1 169 LEU n 1 170 LEU n 1 171 MET n 1 172 MET n 1 173 ASN n 1 174 HIS n 1 175 PRO n 1 176 THR n 1 177 ASN n 1 178 THR n 1 179 HIS n 1 180 TRP n 1 181 TYR n 1 182 HIS n 1 183 SER n 1 184 LEU n 1 185 PRO n 1 186 VAL n 1 187 ARG n 1 188 LYS n 1 189 LYS n 1 190 VAL n 1 191 LEU n 1 192 ALA n 1 193 PRO n 1 194 ARG n 1 195 VAL n 1 196 ASN n 1 197 LEU n 1 198 THR n 1 199 PHE n 1 200 ARG n 1 201 LYS n 1 202 ILE n 1 203 LEU n 1 204 LEU n 1 205 GLY n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DA n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DC n 3 5 DT n 3 6 DC n 3 7 DA n 3 8 2YR n 3 9 DT n 3 10 DG n 3 11 DT n 3 12 DC n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? Synthesis 3 1 sample ? ? ? ? ? Synthesis # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL ; 56 ? 2 PDB 4MGT 4MGT 2 ? ? ? 3 PDB 4MGT 4MGT 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4MGT A 2 ? 204 ? Q6NS38 56 ? 258 ? 56 258 2 2 4MGT B 1 ? 14 ? 4MGT 10 ? 23 ? 10 23 3 3 4MGT C 1 ? 13 ? 4MGT 28 ? 40 ? 28 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MGT MET A 1 ? UNP Q6NS38 ? ? 'initiating methionine' 55 1 1 4MGT SER A 13 ? UNP Q6NS38 CYS 67 conflict 67 2 1 4MGT ALA A 56 ? UNP Q6NS38 ARG 110 'engineered mutation' 110 3 1 4MGT SER A 111 ? UNP Q6NS38 CYS 165 conflict 165 4 1 4MGT CYS A 115 ? UNP Q6NS38 GLY 169 conflict 169 5 1 4MGT SER A 138 ? UNP Q6NS38 CYS 192 conflict 192 6 1 4MGT GLY A 205 ? UNP Q6NS38 ? ? 'expression tag' 259 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4MGT _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;12% PEG 5000, 100mM sodium chloride, 50mM Magnesium chloride, 100mM cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U # _reflns.entry_id 4MGT _reflns.observed_criterion_sigma_F 1.5 _reflns.observed_criterion_sigma_I 1.8 _reflns.d_resolution_high 2.60 _reflns.d_resolution_low 50.00 _reflns.number_all 13880 _reflns.number_obs 13760 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.60 2.69 ? 95.1 ? ? ? ? ? ? ? ? ? 1 1 2.69 2.80 ? 99.3 ? ? ? ? ? ? ? ? ? 2 1 2.80 2.93 ? 99.7 ? ? ? ? ? ? ? ? ? 3 1 2.93 3.08 ? 99.9 ? ? ? ? ? ? ? ? ? 4 1 3.08 3.28 ? 99.8 ? ? ? ? ? ? ? ? ? 5 1 3.28 3.53 ? 99.9 ? ? ? ? ? ? ? ? ? 6 1 # _refine.entry_id 4MGT _refine.ls_d_res_high 2.6000 _refine.ls_d_res_low 30.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3800 _refine.ls_number_reflns_obs 13200 _refine.ls_number_reflns_all 13849 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2330 _refine.ls_R_factor_R_work 0.2306 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2759 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 649 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 70.637 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.4100 _refine.aniso_B[2][2] 0.4100 _refine.aniso_B[3][3] -1.3500 _refine.aniso_B[1][2] 0.4100 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9340 _refine.correlation_coeff_Fo_to_Fc_free 0.9060 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.4480 _refine.pdbx_overall_ESU_R_Free 0.3060 _refine.overall_SU_ML 0.2170 _refine.overall_SU_B 21.8690 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3S5A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 118.400 _refine.B_iso_min 20.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1600 _refine_hist.pdbx_number_atoms_nucleic_acid 550 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2151 _refine_hist.d_res_high 2.6000 _refine_hist.d_res_low 30.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2271 0.010 0.017 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1886 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3180 1.398 1.710 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4345 0.954 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 200 6.590 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 78 31.566 21.923 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 274 18.169 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16 14.535 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 324 0.082 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2167 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 550 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.6000 _refine_ls_shell.d_res_low 2.6670 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.0500 _refine_ls_shell.number_reflns_R_work 858 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3980 _refine_ls_shell.R_factor_R_free 0.4870 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 902 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MGT _struct.title 'ALKBH2 R110A cross-linked to undamaged dsDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MGT _struct_keywords.text 'protein-DNA complex, OXIDOREDUCTASE-DNA complex' _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 20 ? VAL A 35 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 ILE A 27 ? GLY A 96 ? ILE A 81 GLY A 150 1 ? 70 HELX_P HELX_P3 3 ASP A 120 ? LEU A 124 ? ASP A 174 LEU A 178 5 ? 5 HELX_P HELX_P4 4 PRO A 175 ? HIS A 179 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 115 SG ? ? ? 1_555 C 2YR 8 S ? ? A CYS 169 C 2YR 35 1_555 ? ? ? ? ? ? ? 2.101 ? ? covale2 covale both ? C DA 7 "O3'" ? ? ? 1_555 C 2YR 8 P ? ? C DA 34 C 2YR 35 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale both ? C 2YR 8 "O3'" ? ? ? 1_555 C DT 9 P ? ? C 2YR 35 C DT 36 1_555 ? ? ? ? ? ? ? 1.596 ? ? metalc1 metalc ? ? A ASP 119 OD1 ? ? ? 1_555 D MG . MG ? ? A ASP 173 A MG 301 1_555 ? ? ? ? ? ? ? 2.360 ? ? hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 11 C DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 12 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 13 C DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 13 C DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 14 C DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 15 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 15 C DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 17 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 17 C DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 18 C DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 19 C DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 19 C DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 20 C DC 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 3 N3 ? ? B DA 21 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 3 O4 ? ? B DA 21 C DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 22 C DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 1 N3 ? ? B DA 23 C DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 1 O4 ? ? B DA 23 C DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 174 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 175 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.22 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? ALA A 8 ? ARG A 58 ALA A 62 A 2 LEU A 11 ? VAL A 17 ? LEU A 65 VAL A 71 A 3 SER A 168 ? ASN A 173 ? SER A 222 ASN A 227 A 4 ILE A 130 ? GLY A 136 ? ILE A 184 GLY A 190 A 5 ARG A 194 ? ARG A 200 ? ARG A 248 ARG A 254 A 6 PHE A 101 ? TYR A 107 ? PHE A 155 TYR A 161 A 7 GLN A 58 ? GLY A 62 ? GLN A 112 GLY A 116 A 8 LYS A 78 ? PRO A 79 ? LYS A 132 PRO A 133 B 1 ARG A 44 ? VAL A 47 ? ARG A 98 VAL A 101 B 2 LYS A 50 ? SER A 53 ? LYS A 104 SER A 107 C 1 TYR A 68 ? PHE A 70 ? TYR A 122 PHE A 124 C 2 LEU A 73 ? LEU A 75 ? LEU A 127 LEU A 129 D 1 ILE A 114 ? HIS A 117 ? ILE A 168 HIS A 171 D 2 TRP A 180 ? LEU A 184 ? TRP A 234 LEU A 238 D 3 ARG A 139 ? HIS A 145 ? ARG A 193 HIS A 199 D 4 VAL A 159 ? LEU A 164 ? VAL A 213 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 6 ? N ILE A 60 O SER A 13 ? O SER A 67 A 2 3 N THR A 16 ? N THR A 70 O LEU A 169 ? O LEU A 223 A 3 4 O LEU A 170 ? O LEU A 224 N SER A 132 ? N SER A 186 A 4 5 N PHE A 135 ? N PHE A 189 O VAL A 195 ? O VAL A 249 A 5 6 O ARG A 194 ? O ARG A 248 N TYR A 107 ? N TYR A 161 A 6 7 O ILE A 104 ? O ILE A 158 N ALA A 59 ? N ALA A 113 A 7 8 N GLY A 62 ? N GLY A 116 O LYS A 78 ? O LYS A 132 B 1 2 N VAL A 47 ? N VAL A 101 O LYS A 50 ? O LYS A 104 C 1 2 N PHE A 70 ? N PHE A 124 O LEU A 73 ? O LEU A 127 D 1 2 N HIS A 117 ? N HIS A 171 O HIS A 182 ? O HIS A 236 D 2 3 O TYR A 181 ? O TYR A 235 N ARG A 144 ? N ARG A 198 D 3 4 N ARG A 139 ? N ARG A 193 O LEU A 164 ? O LEU A 218 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 117 ? HIS A 171 . ? 1_555 ? 2 AC1 3 ASP A 119 ? ASP A 173 . ? 1_555 ? 3 AC1 3 HIS A 182 ? HIS A 236 . ? 1_555 ? # _atom_sites.entry_id 4MGT _atom_sites.fract_transf_matrix[1][1] 0.007746 _atom_sites.fract_transf_matrix[1][2] 0.004472 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008944 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011839 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 55 55 MET MET A . n A 1 2 SER 2 56 56 SER SER A . n A 1 3 TRP 3 57 57 TRP TRP A . n A 1 4 ARG 4 58 58 ARG ARG A . n A 1 5 HIS 5 59 59 HIS HIS A . n A 1 6 ILE 6 60 60 ILE ILE A . n A 1 7 ARG 7 61 61 ARG ARG A . n A 1 8 ALA 8 62 62 ALA ALA A . n A 1 9 GLU 9 63 63 GLU GLU A . n A 1 10 GLY 10 64 64 GLY GLY A . n A 1 11 LEU 11 65 65 LEU LEU A . n A 1 12 ASP 12 66 66 ASP ASP A . n A 1 13 SER 13 67 67 SER SER A . n A 1 14 SER 14 68 68 SER SER A . n A 1 15 TYR 15 69 69 TYR TYR A . n A 1 16 THR 16 70 70 THR THR A . n A 1 17 VAL 17 71 71 VAL VAL A . n A 1 18 LEU 18 72 72 LEU LEU A . n A 1 19 PHE 19 73 73 PHE PHE A . n A 1 20 GLY 20 74 74 GLY GLY A . n A 1 21 LYS 21 75 75 LYS LYS A . n A 1 22 ALA 22 76 76 ALA ALA A . n A 1 23 GLU 23 77 77 GLU GLU A . n A 1 24 ALA 24 78 78 ALA ALA A . n A 1 25 ASP 25 79 79 ASP ASP A . n A 1 26 GLU 26 80 80 GLU GLU A . n A 1 27 ILE 27 81 81 ILE ILE A . n A 1 28 PHE 28 82 82 PHE PHE A . n A 1 29 GLN 29 83 83 GLN GLN A . n A 1 30 GLU 30 84 84 GLU GLU A . n A 1 31 LEU 31 85 85 LEU LEU A . n A 1 32 GLU 32 86 86 GLU GLU A . n A 1 33 LYS 33 87 87 LYS LYS A . n A 1 34 GLU 34 88 88 GLU GLU A . n A 1 35 VAL 35 89 89 VAL VAL A . n A 1 36 GLU 36 90 90 GLU GLU A . n A 1 37 TYR 37 91 91 TYR TYR A . n A 1 38 PHE 38 92 92 PHE PHE A . n A 1 39 THR 39 93 93 THR THR A . n A 1 40 GLY 40 94 94 GLY GLY A . n A 1 41 ALA 41 95 95 ALA ALA A . n A 1 42 LEU 42 96 96 LEU LEU A . n A 1 43 ALA 43 97 97 ALA ALA A . n A 1 44 ARG 44 98 98 ARG ARG A . n A 1 45 VAL 45 99 99 VAL VAL A . n A 1 46 GLN 46 100 100 GLN GLN A . n A 1 47 VAL 47 101 101 VAL VAL A . n A 1 48 PHE 48 102 102 PHE PHE A . n A 1 49 GLY 49 103 103 GLY GLY A . n A 1 50 LYS 50 104 104 LYS LYS A . n A 1 51 TRP 51 105 105 TRP TRP A . n A 1 52 HIS 52 106 106 HIS HIS A . n A 1 53 SER 53 107 107 SER SER A . n A 1 54 VAL 54 108 108 VAL VAL A . n A 1 55 PRO 55 109 109 PRO PRO A . n A 1 56 ALA 56 110 110 ALA ALA A . n A 1 57 LYS 57 111 111 LYS LYS A . n A 1 58 GLN 58 112 112 GLN GLN A . n A 1 59 ALA 59 113 113 ALA ALA A . n A 1 60 THR 60 114 114 THR THR A . n A 1 61 TYR 61 115 115 TYR TYR A . n A 1 62 GLY 62 116 116 GLY GLY A . n A 1 63 ASP 63 117 117 ASP ASP A . n A 1 64 ALA 64 118 118 ALA ALA A . n A 1 65 GLY 65 119 119 GLY GLY A . n A 1 66 LEU 66 120 120 LEU LEU A . n A 1 67 THR 67 121 121 THR THR A . n A 1 68 TYR 68 122 122 TYR TYR A . n A 1 69 THR 69 123 123 THR THR A . n A 1 70 PHE 70 124 124 PHE PHE A . n A 1 71 SER 71 125 125 SER SER A . n A 1 72 GLY 72 126 126 GLY GLY A . n A 1 73 LEU 73 127 127 LEU LEU A . n A 1 74 THR 74 128 128 THR THR A . n A 1 75 LEU 75 129 129 LEU LEU A . n A 1 76 SER 76 130 130 SER SER A . n A 1 77 PRO 77 131 131 PRO PRO A . n A 1 78 LYS 78 132 132 LYS LYS A . n A 1 79 PRO 79 133 133 PRO PRO A . n A 1 80 TRP 80 134 134 TRP TRP A . n A 1 81 ILE 81 135 135 ILE ILE A . n A 1 82 PRO 82 136 136 PRO PRO A . n A 1 83 VAL 83 137 137 VAL VAL A . n A 1 84 LEU 84 138 138 LEU LEU A . n A 1 85 GLU 85 139 139 GLU GLU A . n A 1 86 ARG 86 140 140 ARG ARG A . n A 1 87 ILE 87 141 141 ILE ILE A . n A 1 88 ARG 88 142 142 ARG ARG A . n A 1 89 ASP 89 143 143 ASP ASP A . n A 1 90 HIS 90 144 144 HIS HIS A . n A 1 91 VAL 91 145 145 VAL VAL A . n A 1 92 SER 92 146 146 SER SER A . n A 1 93 GLY 93 147 147 GLY GLY A . n A 1 94 VAL 94 148 148 VAL VAL A . n A 1 95 THR 95 149 149 THR THR A . n A 1 96 GLY 96 150 150 GLY GLY A . n A 1 97 GLN 97 151 151 GLN GLN A . n A 1 98 THR 98 152 152 THR THR A . n A 1 99 PHE 99 153 153 PHE PHE A . n A 1 100 ASN 100 154 154 ASN ASN A . n A 1 101 PHE 101 155 155 PHE PHE A . n A 1 102 VAL 102 156 156 VAL VAL A . n A 1 103 LEU 103 157 157 LEU LEU A . n A 1 104 ILE 104 158 158 ILE ILE A . n A 1 105 ASN 105 159 159 ASN ASN A . n A 1 106 ARG 106 160 160 ARG ARG A . n A 1 107 TYR 107 161 161 TYR TYR A . n A 1 108 LYS 108 162 162 LYS LYS A . n A 1 109 ASP 109 163 163 ASP ASP A . n A 1 110 GLY 110 164 164 GLY GLY A . n A 1 111 SER 111 165 165 SER SER A . n A 1 112 ASP 112 166 166 ASP ASP A . n A 1 113 HIS 113 167 167 HIS HIS A . n A 1 114 ILE 114 168 168 ILE ILE A . n A 1 115 CYS 115 169 169 CYS CYS A . n A 1 116 GLU 116 170 170 GLU GLU A . n A 1 117 HIS 117 171 171 HIS HIS A . n A 1 118 ARG 118 172 172 ARG ARG A . n A 1 119 ASP 119 173 173 ASP ASP A . n A 1 120 ASP 120 174 174 ASP ASP A . n A 1 121 GLU 121 175 175 GLU GLU A . n A 1 122 ARG 122 176 176 ARG ARG A . n A 1 123 GLU 123 177 177 GLU GLU A . n A 1 124 LEU 124 178 178 LEU LEU A . n A 1 125 ALA 125 179 179 ALA ALA A . n A 1 126 PRO 126 180 ? ? ? A . n A 1 127 GLY 127 181 ? ? ? A . n A 1 128 SER 128 182 182 SER SER A . n A 1 129 PRO 129 183 183 PRO PRO A . n A 1 130 ILE 130 184 184 ILE ILE A . n A 1 131 ALA 131 185 185 ALA ALA A . n A 1 132 SER 132 186 186 SER SER A . n A 1 133 VAL 133 187 187 VAL VAL A . n A 1 134 SER 134 188 188 SER SER A . n A 1 135 PHE 135 189 189 PHE PHE A . n A 1 136 GLY 136 190 190 GLY GLY A . n A 1 137 ALA 137 191 191 ALA ALA A . n A 1 138 SER 138 192 192 SER SER A . n A 1 139 ARG 139 193 193 ARG ARG A . n A 1 140 ASP 140 194 194 ASP ASP A . n A 1 141 PHE 141 195 195 PHE PHE A . n A 1 142 VAL 142 196 196 VAL VAL A . n A 1 143 PHE 143 197 197 PHE PHE A . n A 1 144 ARG 144 198 198 ARG ARG A . n A 1 145 HIS 145 199 199 HIS HIS A . n A 1 146 LYS 146 200 200 LYS LYS A . n A 1 147 ASP 147 201 201 ASP ASP A . n A 1 148 SER 148 202 202 SER SER A . n A 1 149 ARG 149 203 ? ? ? A . n A 1 150 GLY 150 204 ? ? ? A . n A 1 151 LYS 151 205 ? ? ? A . n A 1 152 SER 152 206 ? ? ? A . n A 1 153 PRO 153 207 207 PRO PRO A . n A 1 154 SER 154 208 208 SER SER A . n A 1 155 ARG 155 209 209 ARG ARG A . n A 1 156 ARG 156 210 210 ARG ARG A . n A 1 157 VAL 157 211 211 VAL VAL A . n A 1 158 ALA 158 212 212 ALA ALA A . n A 1 159 VAL 159 213 213 VAL VAL A . n A 1 160 VAL 160 214 214 VAL VAL A . n A 1 161 ARG 161 215 215 ARG ARG A . n A 1 162 LEU 162 216 216 LEU LEU A . n A 1 163 PRO 163 217 217 PRO PRO A . n A 1 164 LEU 164 218 218 LEU LEU A . n A 1 165 ALA 165 219 219 ALA ALA A . n A 1 166 HIS 166 220 220 HIS HIS A . n A 1 167 GLY 167 221 221 GLY GLY A . n A 1 168 SER 168 222 222 SER SER A . n A 1 169 LEU 169 223 223 LEU LEU A . n A 1 170 LEU 170 224 224 LEU LEU A . n A 1 171 MET 171 225 225 MET MET A . n A 1 172 MET 172 226 226 MET MET A . n A 1 173 ASN 173 227 227 ASN ASN A . n A 1 174 HIS 174 228 228 HIS HIS A . n A 1 175 PRO 175 229 229 PRO PRO A . n A 1 176 THR 176 230 230 THR THR A . n A 1 177 ASN 177 231 231 ASN ASN A . n A 1 178 THR 178 232 232 THR THR A . n A 1 179 HIS 179 233 233 HIS HIS A . n A 1 180 TRP 180 234 234 TRP TRP A . n A 1 181 TYR 181 235 235 TYR TYR A . n A 1 182 HIS 182 236 236 HIS HIS A . n A 1 183 SER 183 237 237 SER SER A . n A 1 184 LEU 184 238 238 LEU LEU A . n A 1 185 PRO 185 239 239 PRO PRO A . n A 1 186 VAL 186 240 240 VAL VAL A . n A 1 187 ARG 187 241 241 ARG ARG A . n A 1 188 LYS 188 242 242 LYS LYS A . n A 1 189 LYS 189 243 243 LYS LYS A . n A 1 190 VAL 190 244 244 VAL VAL A . n A 1 191 LEU 191 245 245 LEU LEU A . n A 1 192 ALA 192 246 246 ALA ALA A . n A 1 193 PRO 193 247 247 PRO PRO A . n A 1 194 ARG 194 248 248 ARG ARG A . n A 1 195 VAL 195 249 249 VAL VAL A . n A 1 196 ASN 196 250 250 ASN ASN A . n A 1 197 LEU 197 251 251 LEU LEU A . n A 1 198 THR 198 252 252 THR THR A . n A 1 199 PHE 199 253 253 PHE PHE A . n A 1 200 ARG 200 254 254 ARG ARG A . n A 1 201 LYS 201 255 255 LYS LYS A . n A 1 202 ILE 202 256 256 ILE ILE A . n A 1 203 LEU 203 257 257 LEU LEU A . n A 1 204 LEU 204 258 258 LEU LEU A . n A 1 205 GLY 205 259 259 GLY GLY A . n B 2 1 DT 1 10 10 DT DT B . n B 2 2 DC 2 11 11 DC DC B . n B 2 3 DG 3 12 12 DG DG B . n B 2 4 DA 4 13 13 DA DA B . n B 2 5 DC 5 14 14 DC DC B . n B 2 6 DA 6 15 15 DA DA B . n B 2 7 DG 7 16 16 DG DG B . n B 2 8 DT 8 17 17 DT DT B . n B 2 9 DG 9 18 18 DG DG B . n B 2 10 DA 10 19 19 DA DA B . n B 2 11 DG 11 20 20 DG DG B . n B 2 12 DA 12 21 21 DA DA B . n B 2 13 DC 13 22 22 DC DC B . n B 2 14 DA 14 23 23 DA DA B . n C 3 1 DT 1 28 28 DT DT C . n C 3 2 DG 2 29 29 DG DG C . n C 3 3 DT 3 30 30 DT DT C . n C 3 4 DC 4 31 31 DC DC C . n C 3 5 DT 5 32 32 DT DT C . n C 3 6 DC 6 33 33 DC DC C . n C 3 7 DA 7 34 34 DA DA C . n C 3 8 2YR 8 35 35 2YR 2YR C . n C 3 9 DT 9 36 36 DT DT C . n C 3 10 DG 10 37 37 DG DG C . n C 3 11 DT 11 38 38 DT DT C . n C 3 12 DC 12 39 39 DC DC C . n C 3 13 DG 13 40 40 DG DG C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id MG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id MG _pdbx_nonpoly_scheme.auth_mon_id MG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3030 ? 1 MORE -25 ? 1 'SSA (A^2)' 14140 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-26 2 'Structure model' 1 1 2014-05-28 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_ref_seq_dif 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_conn.conn_type_id' 13 4 'Structure model' '_struct_conn.id' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 16 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_conn_type.id' 31 4 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.600 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 13363 _diffrn_reflns.pdbx_Rmerge_I_obs 0.101 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.06 _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_redundancy 27.60 _diffrn_reflns.pdbx_percent_possible_obs 99.40 _diffrn_reflns.number 369194 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.60 50.00 ? ? 0.047 ? 1.091 29.70 99.70 1 4.45 5.60 ? ? 0.070 ? 1.001 32.00 100.00 1 3.88 4.45 ? ? 0.083 ? 1.091 33.00 99.90 1 3.53 3.88 ? ? 0.124 ? 1.046 33.30 100.00 1 3.28 3.53 ? ? 0.195 ? 1.131 33.40 99.90 1 3.08 3.28 ? ? 0.296 ? 1.100 32.40 99.80 1 2.93 3.08 ? ? 0.430 ? 1.006 29.50 99.90 1 2.80 2.93 ? ? 0.604 ? 1.005 24.40 99.70 1 2.69 2.80 ? ? 0.830 ? 0.994 17.00 99.30 1 2.60 2.69 ? ? 0.894 ? 1.046 9.70 95.10 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 38.5321 -35.7958 -3.9841 0.0893 0.1134 0.1436 -0.0461 0.0924 -0.0157 2.2961 2.0276 0.8263 0.3991 -0.4412 0.0611 0.0754 0.1311 -0.2065 -0.0527 0.1947 -0.0687 0.0060 -0.0854 0.0888 'X-RAY DIFFRACTION' 2 ? refined 48.5332 -18.5380 6.0190 0.1365 0.1490 0.1155 -0.1077 0.0864 -0.1156 4.0321 4.0644 10.5692 -2.0794 2.9621 -3.6353 -0.0510 0.2095 -0.1585 -0.2312 0.2087 -0.2432 0.2772 -0.4956 -0.1955 'X-RAY DIFFRACTION' 3 ? refined 50.5074 -18.0512 6.0938 0.3126 0.2411 0.1853 -0.1964 0.1069 -0.1934 5.2287 4.0922 6.3168 -0.5377 0.8077 -2.4960 0.0461 0.0913 -0.1374 0.0436 -0.0745 0.0400 0.2201 -0.9046 0.3679 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 55 A 259 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 10 B 23 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 28 C 40 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 4 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 63 ? ? -58.53 102.07 2 1 ASP A 173 ? ? -45.06 157.40 3 1 HIS A 228 ? ? -35.14 137.32 4 1 PRO A 229 ? ? -105.67 44.09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 180 ? A PRO 126 2 1 Y 1 A GLY 181 ? A GLY 127 3 1 Y 1 A ARG 203 ? A ARG 149 4 1 Y 1 A GLY 204 ? A GLY 150 5 1 Y 1 A LYS 205 ? A LYS 151 6 1 Y 1 A SER 206 ? A SER 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2YR P P N N 1 2YR OP1 O N N 2 2YR OP2 O N N 3 2YR "O5'" O N N 4 2YR "C5'" C N N 5 2YR "C4'" C N R 6 2YR "O4'" O N N 7 2YR "C3'" C N S 8 2YR "O3'" O N N 9 2YR "C2'" C N N 10 2YR "C1'" C N R 11 2YR N1 N N N 12 2YR C2 C N N 13 2YR O2 O N N 14 2YR N3 N N N 15 2YR C4 C N N 16 2YR N4 N N N 17 2YR C5 C N N 18 2YR C6 C N N 19 2YR S S N N 20 2YR C8 C N N 21 2YR C9 C N N 22 2YR H2 H N N 23 2YR H3 H N N 24 2YR H4 H N N 25 2YR H5 H N N 26 2YR H6 H N N 27 2YR H7 H N N 28 2YR H8 H N N 29 2YR H9 H N N 30 2YR H10 H N N 31 2YR H11 H N N 32 2YR H12 H N N 33 2YR H13 H N N 34 2YR H14 H N N 35 2YR H15 H N N 36 2YR H16 H N N 37 2YR H17 H N N 38 2YR H18 H N N 39 2YR OP3 O N N 40 2YR H20 H N N 41 ALA N N N N 42 ALA CA C N S 43 ALA C C N N 44 ALA O O N N 45 ALA CB C N N 46 ALA OXT O N N 47 ALA H H N N 48 ALA H2 H N N 49 ALA HA H N N 50 ALA HB1 H N N 51 ALA HB2 H N N 52 ALA HB3 H N N 53 ALA HXT H N N 54 ARG N N N N 55 ARG CA C N S 56 ARG C C N N 57 ARG O O N N 58 ARG CB C N N 59 ARG CG C N N 60 ARG CD C N N 61 ARG NE N N N 62 ARG CZ C N N 63 ARG NH1 N N N 64 ARG NH2 N N N 65 ARG OXT O N N 66 ARG H H N N 67 ARG H2 H N N 68 ARG HA H N N 69 ARG HB2 H N N 70 ARG HB3 H N N 71 ARG HG2 H N N 72 ARG HG3 H N N 73 ARG HD2 H N N 74 ARG HD3 H N N 75 ARG HE H N N 76 ARG HH11 H N N 77 ARG HH12 H N N 78 ARG HH21 H N N 79 ARG HH22 H N N 80 ARG HXT H N N 81 ASN N N N N 82 ASN CA C N S 83 ASN C C N N 84 ASN O O N N 85 ASN CB C N N 86 ASN CG C N N 87 ASN OD1 O N N 88 ASN ND2 N N N 89 ASN OXT O N N 90 ASN H H N N 91 ASN H2 H N N 92 ASN HA H N N 93 ASN HB2 H N N 94 ASN HB3 H N N 95 ASN HD21 H N N 96 ASN HD22 H N N 97 ASN HXT H N N 98 ASP N N N N 99 ASP CA C N S 100 ASP C C N N 101 ASP O O N N 102 ASP CB C N N 103 ASP CG C N N 104 ASP OD1 O N N 105 ASP OD2 O N N 106 ASP OXT O N N 107 ASP H H N N 108 ASP H2 H N N 109 ASP HA H N N 110 ASP HB2 H N N 111 ASP HB3 H N N 112 ASP HD2 H N N 113 ASP HXT H N N 114 CYS N N N N 115 CYS CA C N R 116 CYS C C N N 117 CYS O O N N 118 CYS CB C N N 119 CYS SG S N N 120 CYS OXT O N N 121 CYS H H N N 122 CYS H2 H N N 123 CYS HA H N N 124 CYS HB2 H N N 125 CYS HB3 H N N 126 CYS HG H N N 127 CYS HXT H N N 128 DA OP3 O N N 129 DA P P N N 130 DA OP1 O N N 131 DA OP2 O N N 132 DA "O5'" O N N 133 DA "C5'" C N N 134 DA "C4'" C N R 135 DA "O4'" O N N 136 DA "C3'" C N S 137 DA "O3'" O N N 138 DA "C2'" C N N 139 DA "C1'" C N R 140 DA N9 N Y N 141 DA C8 C Y N 142 DA N7 N Y N 143 DA C5 C Y N 144 DA C6 C Y N 145 DA N6 N N N 146 DA N1 N Y N 147 DA C2 C Y N 148 DA N3 N Y N 149 DA C4 C Y N 150 DA HOP3 H N N 151 DA HOP2 H N N 152 DA "H5'" H N N 153 DA "H5''" H N N 154 DA "H4'" H N N 155 DA "H3'" H N N 156 DA "HO3'" H N N 157 DA "H2'" H N N 158 DA "H2''" H N N 159 DA "H1'" H N N 160 DA H8 H N N 161 DA H61 H N N 162 DA H62 H N N 163 DA H2 H N N 164 DC OP3 O N N 165 DC P P N N 166 DC OP1 O N N 167 DC OP2 O N N 168 DC "O5'" O N N 169 DC "C5'" C N N 170 DC "C4'" C N R 171 DC "O4'" O N N 172 DC "C3'" C N S 173 DC "O3'" O N N 174 DC "C2'" C N N 175 DC "C1'" C N R 176 DC N1 N N N 177 DC C2 C N N 178 DC O2 O N N 179 DC N3 N N N 180 DC C4 C N N 181 DC N4 N N N 182 DC C5 C N N 183 DC C6 C N N 184 DC HOP3 H N N 185 DC HOP2 H N N 186 DC "H5'" H N N 187 DC "H5''" H N N 188 DC "H4'" H N N 189 DC "H3'" H N N 190 DC "HO3'" H N N 191 DC "H2'" H N N 192 DC "H2''" H N N 193 DC "H1'" H N N 194 DC H41 H N N 195 DC H42 H N N 196 DC H5 H N N 197 DC H6 H N N 198 DG OP3 O N N 199 DG P P N N 200 DG OP1 O N N 201 DG OP2 O N N 202 DG "O5'" O N N 203 DG "C5'" C N N 204 DG "C4'" C N R 205 DG "O4'" O N N 206 DG "C3'" C N S 207 DG "O3'" O N N 208 DG "C2'" C N N 209 DG "C1'" C N R 210 DG N9 N Y N 211 DG C8 C Y N 212 DG N7 N Y N 213 DG C5 C Y N 214 DG C6 C N N 215 DG O6 O N N 216 DG N1 N N N 217 DG C2 C N N 218 DG N2 N N N 219 DG N3 N N N 220 DG C4 C Y N 221 DG HOP3 H N N 222 DG HOP2 H N N 223 DG "H5'" H N N 224 DG "H5''" H N N 225 DG "H4'" H N N 226 DG "H3'" H N N 227 DG "HO3'" H N N 228 DG "H2'" H N N 229 DG "H2''" H N N 230 DG "H1'" H N N 231 DG H8 H N N 232 DG H1 H N N 233 DG H21 H N N 234 DG H22 H N N 235 DT OP3 O N N 236 DT P P N N 237 DT OP1 O N N 238 DT OP2 O N N 239 DT "O5'" O N N 240 DT "C5'" C N N 241 DT "C4'" C N R 242 DT "O4'" O N N 243 DT "C3'" C N S 244 DT "O3'" O N N 245 DT "C2'" C N N 246 DT "C1'" C N R 247 DT N1 N N N 248 DT C2 C N N 249 DT O2 O N N 250 DT N3 N N N 251 DT C4 C N N 252 DT O4 O N N 253 DT C5 C N N 254 DT C7 C N N 255 DT C6 C N N 256 DT HOP3 H N N 257 DT HOP2 H N N 258 DT "H5'" H N N 259 DT "H5''" H N N 260 DT "H4'" H N N 261 DT "H3'" H N N 262 DT "HO3'" H N N 263 DT "H2'" H N N 264 DT "H2''" H N N 265 DT "H1'" H N N 266 DT H3 H N N 267 DT H71 H N N 268 DT H72 H N N 269 DT H73 H N N 270 DT H6 H N N 271 GLN N N N N 272 GLN CA C N S 273 GLN C C N N 274 GLN O O N N 275 GLN CB C N N 276 GLN CG C N N 277 GLN CD C N N 278 GLN OE1 O N N 279 GLN NE2 N N N 280 GLN OXT O N N 281 GLN H H N N 282 GLN H2 H N N 283 GLN HA H N N 284 GLN HB2 H N N 285 GLN HB3 H N N 286 GLN HG2 H N N 287 GLN HG3 H N N 288 GLN HE21 H N N 289 GLN HE22 H N N 290 GLN HXT H N N 291 GLU N N N N 292 GLU CA C N S 293 GLU C C N N 294 GLU O O N N 295 GLU CB C N N 296 GLU CG C N N 297 GLU CD C N N 298 GLU OE1 O N N 299 GLU OE2 O N N 300 GLU OXT O N N 301 GLU H H N N 302 GLU H2 H N N 303 GLU HA H N N 304 GLU HB2 H N N 305 GLU HB3 H N N 306 GLU HG2 H N N 307 GLU HG3 H N N 308 GLU HE2 H N N 309 GLU HXT H N N 310 GLY N N N N 311 GLY CA C N N 312 GLY C C N N 313 GLY O O N N 314 GLY OXT O N N 315 GLY H H N N 316 GLY H2 H N N 317 GLY HA2 H N N 318 GLY HA3 H N N 319 GLY HXT H N N 320 HIS N N N N 321 HIS CA C N S 322 HIS C C N N 323 HIS O O N N 324 HIS CB C N N 325 HIS CG C Y N 326 HIS ND1 N Y N 327 HIS CD2 C Y N 328 HIS CE1 C Y N 329 HIS NE2 N Y N 330 HIS OXT O N N 331 HIS H H N N 332 HIS H2 H N N 333 HIS HA H N N 334 HIS HB2 H N N 335 HIS HB3 H N N 336 HIS HD1 H N N 337 HIS HD2 H N N 338 HIS HE1 H N N 339 HIS HE2 H N N 340 HIS HXT H N N 341 ILE N N N N 342 ILE CA C N S 343 ILE C C N N 344 ILE O O N N 345 ILE CB C N S 346 ILE CG1 C N N 347 ILE CG2 C N N 348 ILE CD1 C N N 349 ILE OXT O N N 350 ILE H H N N 351 ILE H2 H N N 352 ILE HA H N N 353 ILE HB H N N 354 ILE HG12 H N N 355 ILE HG13 H N N 356 ILE HG21 H N N 357 ILE HG22 H N N 358 ILE HG23 H N N 359 ILE HD11 H N N 360 ILE HD12 H N N 361 ILE HD13 H N N 362 ILE HXT H N N 363 LEU N N N N 364 LEU CA C N S 365 LEU C C N N 366 LEU O O N N 367 LEU CB C N N 368 LEU CG C N N 369 LEU CD1 C N N 370 LEU CD2 C N N 371 LEU OXT O N N 372 LEU H H N N 373 LEU H2 H N N 374 LEU HA H N N 375 LEU HB2 H N N 376 LEU HB3 H N N 377 LEU HG H N N 378 LEU HD11 H N N 379 LEU HD12 H N N 380 LEU HD13 H N N 381 LEU HD21 H N N 382 LEU HD22 H N N 383 LEU HD23 H N N 384 LEU HXT H N N 385 LYS N N N N 386 LYS CA C N S 387 LYS C C N N 388 LYS O O N N 389 LYS CB C N N 390 LYS CG C N N 391 LYS CD C N N 392 LYS CE C N N 393 LYS NZ N N N 394 LYS OXT O N N 395 LYS H H N N 396 LYS H2 H N N 397 LYS HA H N N 398 LYS HB2 H N N 399 LYS HB3 H N N 400 LYS HG2 H N N 401 LYS HG3 H N N 402 LYS HD2 H N N 403 LYS HD3 H N N 404 LYS HE2 H N N 405 LYS HE3 H N N 406 LYS HZ1 H N N 407 LYS HZ2 H N N 408 LYS HZ3 H N N 409 LYS HXT H N N 410 MET N N N N 411 MET CA C N S 412 MET C C N N 413 MET O O N N 414 MET CB C N N 415 MET CG C N N 416 MET SD S N N 417 MET CE C N N 418 MET OXT O N N 419 MET H H N N 420 MET H2 H N N 421 MET HA H N N 422 MET HB2 H N N 423 MET HB3 H N N 424 MET HG2 H N N 425 MET HG3 H N N 426 MET HE1 H N N 427 MET HE2 H N N 428 MET HE3 H N N 429 MET HXT H N N 430 MG MG MG N N 431 PHE N N N N 432 PHE CA C N S 433 PHE C C N N 434 PHE O O N N 435 PHE CB C N N 436 PHE CG C Y N 437 PHE CD1 C Y N 438 PHE CD2 C Y N 439 PHE CE1 C Y N 440 PHE CE2 C Y N 441 PHE CZ C Y N 442 PHE OXT O N N 443 PHE H H N N 444 PHE H2 H N N 445 PHE HA H N N 446 PHE HB2 H N N 447 PHE HB3 H N N 448 PHE HD1 H N N 449 PHE HD2 H N N 450 PHE HE1 H N N 451 PHE HE2 H N N 452 PHE HZ H N N 453 PHE HXT H N N 454 PRO N N N N 455 PRO CA C N S 456 PRO C C N N 457 PRO O O N N 458 PRO CB C N N 459 PRO CG C N N 460 PRO CD C N N 461 PRO OXT O N N 462 PRO H H N N 463 PRO HA H N N 464 PRO HB2 H N N 465 PRO HB3 H N N 466 PRO HG2 H N N 467 PRO HG3 H N N 468 PRO HD2 H N N 469 PRO HD3 H N N 470 PRO HXT H N N 471 SER N N N N 472 SER CA C N S 473 SER C C N N 474 SER O O N N 475 SER CB C N N 476 SER OG O N N 477 SER OXT O N N 478 SER H H N N 479 SER H2 H N N 480 SER HA H N N 481 SER HB2 H N N 482 SER HB3 H N N 483 SER HG H N N 484 SER HXT H N N 485 THR N N N N 486 THR CA C N S 487 THR C C N N 488 THR O O N N 489 THR CB C N R 490 THR OG1 O N N 491 THR CG2 C N N 492 THR OXT O N N 493 THR H H N N 494 THR H2 H N N 495 THR HA H N N 496 THR HB H N N 497 THR HG1 H N N 498 THR HG21 H N N 499 THR HG22 H N N 500 THR HG23 H N N 501 THR HXT H N N 502 TRP N N N N 503 TRP CA C N S 504 TRP C C N N 505 TRP O O N N 506 TRP CB C N N 507 TRP CG C Y N 508 TRP CD1 C Y N 509 TRP CD2 C Y N 510 TRP NE1 N Y N 511 TRP CE2 C Y N 512 TRP CE3 C Y N 513 TRP CZ2 C Y N 514 TRP CZ3 C Y N 515 TRP CH2 C Y N 516 TRP OXT O N N 517 TRP H H N N 518 TRP H2 H N N 519 TRP HA H N N 520 TRP HB2 H N N 521 TRP HB3 H N N 522 TRP HD1 H N N 523 TRP HE1 H N N 524 TRP HE3 H N N 525 TRP HZ2 H N N 526 TRP HZ3 H N N 527 TRP HH2 H N N 528 TRP HXT H N N 529 TYR N N N N 530 TYR CA C N S 531 TYR C C N N 532 TYR O O N N 533 TYR CB C N N 534 TYR CG C Y N 535 TYR CD1 C Y N 536 TYR CD2 C Y N 537 TYR CE1 C Y N 538 TYR CE2 C Y N 539 TYR CZ C Y N 540 TYR OH O N N 541 TYR OXT O N N 542 TYR H H N N 543 TYR H2 H N N 544 TYR HA H N N 545 TYR HB2 H N N 546 TYR HB3 H N N 547 TYR HD1 H N N 548 TYR HD2 H N N 549 TYR HE1 H N N 550 TYR HE2 H N N 551 TYR HH H N N 552 TYR HXT H N N 553 VAL N N N N 554 VAL CA C N S 555 VAL C C N N 556 VAL O O N N 557 VAL CB C N N 558 VAL CG1 C N N 559 VAL CG2 C N N 560 VAL OXT O N N 561 VAL H H N N 562 VAL H2 H N N 563 VAL HA H N N 564 VAL HB H N N 565 VAL HG11 H N N 566 VAL HG12 H N N 567 VAL HG13 H N N 568 VAL HG21 H N N 569 VAL HG22 H N N 570 VAL HG23 H N N 571 VAL HXT H N N 572 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2YR S C8 sing N N 1 2YR C8 C9 sing N N 2 2YR N4 C9 sing N N 3 2YR N4 C4 sing N N 4 2YR C4 N3 doub N N 5 2YR C4 C5 sing N N 6 2YR N3 C2 sing N N 7 2YR C5 C6 doub N N 8 2YR C2 O2 doub N N 9 2YR C2 N1 sing N N 10 2YR C6 N1 sing N N 11 2YR N1 "C1'" sing N N 12 2YR "C2'" "C3'" sing N N 13 2YR "C2'" "C1'" sing N N 14 2YR "C3'" "O3'" sing N N 15 2YR "C3'" "C4'" sing N N 16 2YR "C1'" "O4'" sing N N 17 2YR "O4'" "C4'" sing N N 18 2YR "C4'" "C5'" sing N N 19 2YR "C5'" "O5'" sing N N 20 2YR "O5'" P sing N N 21 2YR OP2 P sing N N 22 2YR P OP1 doub N N 23 2YR OP2 H2 sing N N 24 2YR "C5'" H3 sing N N 25 2YR "C5'" H4 sing N N 26 2YR "C4'" H5 sing N N 27 2YR "C3'" H6 sing N N 28 2YR "O3'" H7 sing N N 29 2YR "C2'" H8 sing N N 30 2YR "C2'" H9 sing N N 31 2YR "C1'" H10 sing N N 32 2YR N4 H11 sing N N 33 2YR C5 H12 sing N N 34 2YR C6 H13 sing N N 35 2YR S H14 sing N N 36 2YR C8 H15 sing N N 37 2YR C8 H16 sing N N 38 2YR C9 H17 sing N N 39 2YR C9 H18 sing N N 40 2YR P OP3 sing N N 41 2YR OP3 H20 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 ILE N CA sing N N 341 ILE N H sing N N 342 ILE N H2 sing N N 343 ILE CA C sing N N 344 ILE CA CB sing N N 345 ILE CA HA sing N N 346 ILE C O doub N N 347 ILE C OXT sing N N 348 ILE CB CG1 sing N N 349 ILE CB CG2 sing N N 350 ILE CB HB sing N N 351 ILE CG1 CD1 sing N N 352 ILE CG1 HG12 sing N N 353 ILE CG1 HG13 sing N N 354 ILE CG2 HG21 sing N N 355 ILE CG2 HG22 sing N N 356 ILE CG2 HG23 sing N N 357 ILE CD1 HD11 sing N N 358 ILE CD1 HD12 sing N N 359 ILE CD1 HD13 sing N N 360 ILE OXT HXT sing N N 361 LEU N CA sing N N 362 LEU N H sing N N 363 LEU N H2 sing N N 364 LEU CA C sing N N 365 LEU CA CB sing N N 366 LEU CA HA sing N N 367 LEU C O doub N N 368 LEU C OXT sing N N 369 LEU CB CG sing N N 370 LEU CB HB2 sing N N 371 LEU CB HB3 sing N N 372 LEU CG CD1 sing N N 373 LEU CG CD2 sing N N 374 LEU CG HG sing N N 375 LEU CD1 HD11 sing N N 376 LEU CD1 HD12 sing N N 377 LEU CD1 HD13 sing N N 378 LEU CD2 HD21 sing N N 379 LEU CD2 HD22 sing N N 380 LEU CD2 HD23 sing N N 381 LEU OXT HXT sing N N 382 LYS N CA sing N N 383 LYS N H sing N N 384 LYS N H2 sing N N 385 LYS CA C sing N N 386 LYS CA CB sing N N 387 LYS CA HA sing N N 388 LYS C O doub N N 389 LYS C OXT sing N N 390 LYS CB CG sing N N 391 LYS CB HB2 sing N N 392 LYS CB HB3 sing N N 393 LYS CG CD sing N N 394 LYS CG HG2 sing N N 395 LYS CG HG3 sing N N 396 LYS CD CE sing N N 397 LYS CD HD2 sing N N 398 LYS CD HD3 sing N N 399 LYS CE NZ sing N N 400 LYS CE HE2 sing N N 401 LYS CE HE3 sing N N 402 LYS NZ HZ1 sing N N 403 LYS NZ HZ2 sing N N 404 LYS NZ HZ3 sing N N 405 LYS OXT HXT sing N N 406 MET N CA sing N N 407 MET N H sing N N 408 MET N H2 sing N N 409 MET CA C sing N N 410 MET CA CB sing N N 411 MET CA HA sing N N 412 MET C O doub N N 413 MET C OXT sing N N 414 MET CB CG sing N N 415 MET CB HB2 sing N N 416 MET CB HB3 sing N N 417 MET CG SD sing N N 418 MET CG HG2 sing N N 419 MET CG HG3 sing N N 420 MET SD CE sing N N 421 MET CE HE1 sing N N 422 MET CE HE2 sing N N 423 MET CE HE3 sing N N 424 MET OXT HXT sing N N 425 PHE N CA sing N N 426 PHE N H sing N N 427 PHE N H2 sing N N 428 PHE CA C sing N N 429 PHE CA CB sing N N 430 PHE CA HA sing N N 431 PHE C O doub N N 432 PHE C OXT sing N N 433 PHE CB CG sing N N 434 PHE CB HB2 sing N N 435 PHE CB HB3 sing N N 436 PHE CG CD1 doub Y N 437 PHE CG CD2 sing Y N 438 PHE CD1 CE1 sing Y N 439 PHE CD1 HD1 sing N N 440 PHE CD2 CE2 doub Y N 441 PHE CD2 HD2 sing N N 442 PHE CE1 CZ doub Y N 443 PHE CE1 HE1 sing N N 444 PHE CE2 CZ sing Y N 445 PHE CE2 HE2 sing N N 446 PHE CZ HZ sing N N 447 PHE OXT HXT sing N N 448 PRO N CA sing N N 449 PRO N CD sing N N 450 PRO N H sing N N 451 PRO CA C sing N N 452 PRO CA CB sing N N 453 PRO CA HA sing N N 454 PRO C O doub N N 455 PRO C OXT sing N N 456 PRO CB CG sing N N 457 PRO CB HB2 sing N N 458 PRO CB HB3 sing N N 459 PRO CG CD sing N N 460 PRO CG HG2 sing N N 461 PRO CG HG3 sing N N 462 PRO CD HD2 sing N N 463 PRO CD HD3 sing N N 464 PRO OXT HXT sing N N 465 SER N CA sing N N 466 SER N H sing N N 467 SER N H2 sing N N 468 SER CA C sing N N 469 SER CA CB sing N N 470 SER CA HA sing N N 471 SER C O doub N N 472 SER C OXT sing N N 473 SER CB OG sing N N 474 SER CB HB2 sing N N 475 SER CB HB3 sing N N 476 SER OG HG sing N N 477 SER OXT HXT sing N N 478 THR N CA sing N N 479 THR N H sing N N 480 THR N H2 sing N N 481 THR CA C sing N N 482 THR CA CB sing N N 483 THR CA HA sing N N 484 THR C O doub N N 485 THR C OXT sing N N 486 THR CB OG1 sing N N 487 THR CB CG2 sing N N 488 THR CB HB sing N N 489 THR OG1 HG1 sing N N 490 THR CG2 HG21 sing N N 491 THR CG2 HG22 sing N N 492 THR CG2 HG23 sing N N 493 THR OXT HXT sing N N 494 TRP N CA sing N N 495 TRP N H sing N N 496 TRP N H2 sing N N 497 TRP CA C sing N N 498 TRP CA CB sing N N 499 TRP CA HA sing N N 500 TRP C O doub N N 501 TRP C OXT sing N N 502 TRP CB CG sing N N 503 TRP CB HB2 sing N N 504 TRP CB HB3 sing N N 505 TRP CG CD1 doub Y N 506 TRP CG CD2 sing Y N 507 TRP CD1 NE1 sing Y N 508 TRP CD1 HD1 sing N N 509 TRP CD2 CE2 doub Y N 510 TRP CD2 CE3 sing Y N 511 TRP NE1 CE2 sing Y N 512 TRP NE1 HE1 sing N N 513 TRP CE2 CZ2 sing Y N 514 TRP CE3 CZ3 doub Y N 515 TRP CE3 HE3 sing N N 516 TRP CZ2 CH2 doub Y N 517 TRP CZ2 HZ2 sing N N 518 TRP CZ3 CH2 sing Y N 519 TRP CZ3 HZ3 sing N N 520 TRP CH2 HH2 sing N N 521 TRP OXT HXT sing N N 522 TYR N CA sing N N 523 TYR N H sing N N 524 TYR N H2 sing N N 525 TYR CA C sing N N 526 TYR CA CB sing N N 527 TYR CA HA sing N N 528 TYR C O doub N N 529 TYR C OXT sing N N 530 TYR CB CG sing N N 531 TYR CB HB2 sing N N 532 TYR CB HB3 sing N N 533 TYR CG CD1 doub Y N 534 TYR CG CD2 sing Y N 535 TYR CD1 CE1 sing Y N 536 TYR CD1 HD1 sing N N 537 TYR CD2 CE2 doub Y N 538 TYR CD2 HD2 sing N N 539 TYR CE1 CZ doub Y N 540 TYR CE1 HE1 sing N N 541 TYR CE2 CZ sing Y N 542 TYR CE2 HE2 sing N N 543 TYR CZ OH sing N N 544 TYR OH HH sing N N 545 TYR OXT HXT sing N N 546 VAL N CA sing N N 547 VAL N H sing N N 548 VAL N H2 sing N N 549 VAL CA C sing N N 550 VAL CA CB sing N N 551 VAL CA HA sing N N 552 VAL C O doub N N 553 VAL C OXT sing N N 554 VAL CB CG1 sing N N 555 VAL CB CG2 sing N N 556 VAL CB HB sing N N 557 VAL CG1 HG11 sing N N 558 VAL CG1 HG12 sing N N 559 VAL CG1 HG13 sing N N 560 VAL CG2 HG21 sing N N 561 VAL CG2 HG22 sing N N 562 VAL CG2 HG23 sing N N 563 VAL OXT HXT sing N N 564 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4MGT 'double helix' 4MGT 'b-form double helix' # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'MAGNESIUM ION' _pdbx_entity_nonpoly.comp_id MG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3S5A _pdbx_initial_refinement_model.details 'PDB ENTRY 3S5A' #