HEADER VIRAL PROTEIN/APOPTOSIS 30-AUG-13 4MI8 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF MURINE GAMMA-HERPESVIRUS 68 BCL-2 TITLE 2 HOMOLOG M11 AND A BECLIN 1 BH3 DOMAIN-DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2 HOMOLOG (GENE 16?); COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-136; COMPND 5 SYNONYM: M11, M11 PROTEIN, V-BCL-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BECLIN-1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 107-130; COMPND 11 SYNONYM: COILED-COIL MYOSIN-LIKE BCL2-INTERACTING PROTEIN, PROTEIN COMPND 12 GT197; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: MUHV-4; SOURCE 4 ORGANISM_TAXID: 33708; SOURCE 5 GENE: GAMMAHV.M11, M11, V-BCL-2, V-BCL-2 GAMMAHV.M11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(D+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS BH3D, BCL-2 FAMILY, ANTI-APOPTOTIC AND ANTI-AUTOPHAGIC ACTIVITIES, KEYWDS 2 VIRAL PROTEIN-APOPTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.SU,Y.MEI,S.SINHA REVDAT 4 30-OCT-24 4MI8 1 REMARK SEQADV REVDAT 3 17-FEB-16 4MI8 1 AUTHOR REVDAT 2 08-OCT-14 4MI8 1 JRNL REVDAT 1 29-JAN-14 4MI8 0 JRNL AUTH M.SU,Y.MEI,R.SANISHVILI,B.LEVINE,C.L.COLBERT,S.SINHA JRNL TITL TARGETING GAMMA-HERPESVIRUS 68 BCL-2-MEDIATED JRNL TITL 2 DOWN-REGULATION OF AUTOPHAGY. JRNL REF J.BIOL.CHEM. V. 289 8029 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24443581 JRNL DOI 10.1074/JBC.M113.515361 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 989 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2614 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3539 ; 1.970 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 5.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;31.320 ;23.680 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;18.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1942 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6313 41.3706 13.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1162 REMARK 3 T33: 0.0859 T12: -0.0203 REMARK 3 T13: 0.0881 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.9062 L22: 7.5447 REMARK 3 L33: 1.3266 L12: 0.3261 REMARK 3 L13: -0.2465 L23: -2.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.3130 S13: 0.0936 REMARK 3 S21: -0.1901 S22: -0.0546 S23: -0.5255 REMARK 3 S31: -0.0073 S32: 0.0455 S33: 0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2406 70.9044 12.7799 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0819 REMARK 3 T33: 0.0737 T12: -0.0378 REMARK 3 T13: -0.0599 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.1173 L22: 2.4018 REMARK 3 L33: 1.4249 L12: -0.4776 REMARK 3 L13: 0.4413 L23: 0.6981 REMARK 3 S TENSOR REMARK 3 S11: 0.0928 S12: 0.1702 S13: -0.1338 REMARK 3 S21: 0.1979 S22: -0.0260 S23: 0.0158 REMARK 3 S31: 0.1699 S32: -0.0555 S33: -0.0668 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 108 C 127 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4562 26.1554 14.9517 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.0250 REMARK 3 T33: 0.1315 T12: 0.0066 REMARK 3 T13: 0.0980 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 8.8079 L22: 8.4085 REMARK 3 L33: 3.1155 L12: -2.1041 REMARK 3 L13: -2.5972 L23: -2.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.4181 S13: -0.6039 REMARK 3 S21: -0.3665 S22: -0.1888 S23: -0.3024 REMARK 3 S31: 0.2909 S32: -0.0181 S33: 0.2809 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 106 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3757 86.1927 13.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.0105 REMARK 3 T33: 0.1144 T12: -0.0121 REMARK 3 T13: -0.0463 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 11.0520 L22: 4.2450 REMARK 3 L33: 3.7665 L12: -0.9635 REMARK 3 L13: 3.4848 L23: -0.3841 REMARK 3 S TENSOR REMARK 3 S11: -0.1786 S12: -0.0878 S13: 0.6392 REMARK 3 S21: -0.1178 S22: 0.1311 S23: 0.0338 REMARK 3 S31: -0.2871 S32: -0.0227 S33: 0.0475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24082 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M AMMONIUM SULFATE, 8% 2-PROPANOL, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.29900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.42200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.29900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 70.42200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -221.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 37.47028 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.69262 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 35.29900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 70.42200 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 2.17128 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 70.42200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 42.69262 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 330 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 363 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 364 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 214 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 GLY C 105 REMARK 465 SER C 106 REMARK 465 GLY C 107 REMARK 465 GLY C 128 REMARK 465 GLN C 129 REMARK 465 THR C 130 REMARK 465 GLY D 105 REMARK 465 GLY D 128 REMARK 465 GLN D 129 REMARK 465 THR D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 101 -19.73 -142.56 REMARK 500 VAL A 102 -65.11 -96.84 REMARK 500 TRP A 108 72.19 -100.16 REMARK 500 PHE A 132 84.42 -167.54 REMARK 500 PHE B 132 81.07 -155.39 REMARK 500 MET D 126 71.13 55.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DVU RELATED DB: PDB REMARK 900 STRUCTURE OF GAMMA-HERPESVIRUS M11 BOUND TO THE BECLIN 1 BH3D DBREF 4MI8 A 2 136 UNP P89884 P89884_MHV68 2 136 DBREF 4MI8 B 2 136 UNP P89884 P89884_MHV68 2 136 DBREF 4MI8 C 107 130 UNP Q14457 BECN1_HUMAN 107 130 DBREF 4MI8 D 107 130 UNP Q14457 BECN1_HUMAN 107 130 SEQADV 4MI8 MET A 0 UNP P89884 EXPRESSION TAG SEQADV 4MI8 ALA A 1 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 137 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 138 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 139 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 140 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 141 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS A 142 UNP P89884 EXPRESSION TAG SEQADV 4MI8 MET B 0 UNP P89884 EXPRESSION TAG SEQADV 4MI8 ALA B 1 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 137 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 138 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 139 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 140 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 141 UNP P89884 EXPRESSION TAG SEQADV 4MI8 HIS B 142 UNP P89884 EXPRESSION TAG SEQADV 4MI8 GLY C 105 UNP Q14457 EXPRESSION TAG SEQADV 4MI8 SER C 106 UNP Q14457 EXPRESSION TAG SEQADV 4MI8 GLU C 120 UNP Q14457 GLY 120 ENGINEERED MUTATION SEQADV 4MI8 ALA C 121 UNP Q14457 ASP 121 ENGINEERED MUTATION SEQADV 4MI8 GLY D 105 UNP Q14457 EXPRESSION TAG SEQADV 4MI8 SER D 106 UNP Q14457 EXPRESSION TAG SEQADV 4MI8 GLU D 120 UNP Q14457 GLY 120 ENGINEERED MUTATION SEQADV 4MI8 ALA D 121 UNP Q14457 ASP 121 ENGINEERED MUTATION SEQRES 1 A 143 MET ALA SER HIS LYS LYS SER GLY THR TYR TRP ALA THR SEQRES 2 A 143 LEU ILE THR ALA PHE LEU LYS THR VAL SER LYS VAL GLU SEQRES 3 A 143 GLU LEU ASP CYS VAL ASP SER ALA VAL LEU VAL ASP VAL SEQRES 4 A 143 SER LYS ILE ILE THR LEU THR GLN GLU PHE ARG ARG HIS SEQRES 5 A 143 TYR ASP SER VAL TYR ARG ALA ASP TYR GLY PRO ALA LEU SEQRES 6 A 143 LYS ASN TRP LYS ARG ASP LEU SER LYS LEU PHE THR SER SEQRES 7 A 143 LEU PHE VAL ASP VAL ILE ASN SER GLY ARG ILE VAL GLY SEQRES 8 A 143 PHE PHE ASP VAL GLY ARG TYR VAL CYS GLU GLU VAL LEU SEQRES 9 A 143 CYS PRO GLY SER TRP THR GLU ASP HIS GLU LEU LEU ASN SEQRES 10 A 143 ASP CYS MET THR HIS PHE PHE ILE GLU ASN ASN LEU MET SEQRES 11 A 143 ASN HIS PHE PRO LEU GLU ASP HIS HIS HIS HIS HIS HIS SEQRES 1 B 143 MET ALA SER HIS LYS LYS SER GLY THR TYR TRP ALA THR SEQRES 2 B 143 LEU ILE THR ALA PHE LEU LYS THR VAL SER LYS VAL GLU SEQRES 3 B 143 GLU LEU ASP CYS VAL ASP SER ALA VAL LEU VAL ASP VAL SEQRES 4 B 143 SER LYS ILE ILE THR LEU THR GLN GLU PHE ARG ARG HIS SEQRES 5 B 143 TYR ASP SER VAL TYR ARG ALA ASP TYR GLY PRO ALA LEU SEQRES 6 B 143 LYS ASN TRP LYS ARG ASP LEU SER LYS LEU PHE THR SER SEQRES 7 B 143 LEU PHE VAL ASP VAL ILE ASN SER GLY ARG ILE VAL GLY SEQRES 8 B 143 PHE PHE ASP VAL GLY ARG TYR VAL CYS GLU GLU VAL LEU SEQRES 9 B 143 CYS PRO GLY SER TRP THR GLU ASP HIS GLU LEU LEU ASN SEQRES 10 B 143 ASP CYS MET THR HIS PHE PHE ILE GLU ASN ASN LEU MET SEQRES 11 B 143 ASN HIS PHE PRO LEU GLU ASP HIS HIS HIS HIS HIS HIS SEQRES 1 C 26 GLY SER GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 C 26 VAL THR GLU ALA LEU PHE ASP ILE MET SER GLY GLN THR SEQRES 1 D 26 GLY SER GLY THR MET GLU ASN LEU SER ARG ARG LEU LYS SEQRES 2 D 26 VAL THR GLU ALA LEU PHE ASP ILE MET SER GLY GLN THR HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *133(H2 O) HELIX 1 1 SER A 6 LYS A 23 1 18 HELIX 2 2 GLU A 26 VAL A 30 5 5 HELIX 3 3 ASP A 31 TYR A 56 1 26 HELIX 4 4 ALA A 63 LYS A 65 5 3 HELIX 5 5 ASN A 66 ASP A 81 1 16 HELIX 6 6 ASN A 84 VAL A 102 1 19 HELIX 7 7 THR A 109 ASN A 126 1 18 HELIX 8 8 ASN A 127 PHE A 132 5 6 HELIX 9 9 SER B 6 LYS B 23 1 18 HELIX 10 10 GLU B 26 VAL B 30 5 5 HELIX 11 11 ASP B 31 TYR B 56 1 26 HELIX 12 12 TYR B 60 LYS B 65 1 6 HELIX 13 13 ASN B 66 PHE B 79 1 14 HELIX 14 14 ASN B 84 VAL B 102 1 19 HELIX 15 15 THR B 109 ASN B 126 1 18 HELIX 16 16 ASN B 127 PHE B 132 5 6 HELIX 17 17 MET C 109 ASP C 124 1 16 HELIX 18 18 GLY D 107 ASP D 124 1 18 SSBOND 1 CYS A 29 CYS B 104 1555 1555 1.99 SITE 1 AC1 6 ARG A 57 ALA A 58 HOH A 325 SO4 B 201 SITE 2 AC1 6 ARG C 115 ARG D 115 SITE 1 AC2 5 SO4 A 201 ARG B 57 ALA B 58 ARG C 115 SITE 2 AC2 5 ARG D 115 SITE 1 AC3 2 HIS B 3 LYS B 4 SITE 1 AC4 3 ASN B 127 ASN B 130 HIS B 131 CRYST1 70.598 140.844 54.038 90.00 127.81 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014165 0.000000 0.010992 0.00000 SCALE2 0.000000 0.007100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023424 0.00000