HEADER TRANSFERASE/TRANSFERASE INHIBITOR 31-AUG-13 4MII OBSLTE 10-JUN-15 4MII 4ZU8 TITLE CRYSTAL STRUCTURE OF O-ACETYLSERINE SULFHYDRYLASE FROM HAEMOPHILUS TITLE 2 INFLUENZAE IN COMPLEX WITH PRE-REACTIVE O-ACETYL SERINE, ALPHA- TITLE 3 AMINOACRYLATE REACTION INTERMEDIATE AND PEPTIDE INHIBITOR AT THE TITLE 4 RESOLUTION OF 2.25 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE SYNTHASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: CSASE, O-ACETYLSERINE (THIOL)-LYASE, OAS-TL, O-ACETYLSERINE COMPND 5 SULFHYDRYLASE; COMPND 6 EC: 2.5.1.47; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: C-TERMINAL FRAGMENT FROM SERINE ACETYLTRANSFERASE; COMPND 10 CHAIN: A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC51907; SOURCE 5 GENE: CYSK, HI_1103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 14 ORGANISM_TAXID: 90371 KEYWDS ALPHA/BETA FOLD, ROSSMANN FOLD CYSK, CATALYTIC ACTIVITY CYSTEINE KEYWDS 2 SYNTHASE ACTIVITY TRANSFERASE ACTIVITY, SERINE ACETYL TRANSFERASE, KEYWDS 3 STRUCTURAL GENOMICS, ENZYME FUNCTION INITIATIVE, TRANSFERASE- KEYWDS 4 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SINGH,A.KAUSHIK,M.K.EKKA,S.KUMARAN REVDAT 2 10-JUN-15 4MII 1 OBSLTE REVDAT 1 03-SEP-14 4MII 0 JRNL AUTH A.K.SINGH,A.KAUSHIK,M.K.EKKA,S.KUMARAN JRNL TITL CRYSTAL STRUCTURE OF O-ACETYLSERINE SULFHYDRYLASE FROM JRNL TITL 2 HAEMOPHILUS INFLUENZAE IN COMPLEX WITH PRE-REACTIVE O-ACETYL JRNL TITL 3 SERINE, ALPHA-AMINOACRYLATE REACTION INTERMEDIATE AND JRNL TITL 4 PEPTIDE INHIBITOR AT THE RESOLUTION OF 2.25 ANGSTROM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6253 - 3.8394 1.00 2710 146 0.1829 0.1870 REMARK 3 2 3.8394 - 3.0479 0.99 2632 130 0.1799 0.2415 REMARK 3 3 3.0479 - 2.6628 1.00 2660 130 0.1846 0.2297 REMARK 3 4 2.6628 - 2.4194 1.00 2598 147 0.1974 0.2756 REMARK 3 5 2.4194 - 2.2460 0.99 2603 139 0.2239 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 57.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.09400 REMARK 3 B22 (A**2) : -11.09400 REMARK 3 B33 (A**2) : 22.18810 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2367 REMARK 3 ANGLE : 1.200 3215 REMARK 3 CHIRALITY : 0.079 383 REMARK 3 PLANARITY : 0.006 415 REMARK 3 DIHEDRAL : 14.259 854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB081952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE POLAR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.621 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4HO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M SODIUM CITRATE, 0.1M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.32150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 56.32150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.94900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.32150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.47450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.32150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.42350 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.32150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.32150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.94900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 56.32150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.42350 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 56.32150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 11.47450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU X 312 REMARK 465 GLY X 313 REMARK 465 ILE X 314 REMARK 465 GLU X 315 REMARK 465 GLY X 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 55 CG CD CE NZ REMARK 470 LYS X 61 CG CD CE NZ REMARK 470 LYS X 87 CG CD CE NZ REMARK 470 ARG X 102 CG CD NE CZ NH1 NH2 REMARK 470 LEU X 113 CG CD1 CD2 REMARK 470 LYS X 121 CG CD CE NZ REMARK 470 ARG X 137 CG CD NE CZ NH1 NH2 REMARK 470 TYR X 138 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS X 163 CG CD CE NZ REMARK 470 GLU X 218 CG CD OE1 OE2 REMARK 470 LYS X 220 CG CD CE NZ REMARK 470 LEU X 306 CG CD1 CD2 REMARK 470 PHE A 267 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 269 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER X 70 O PDA X 401 2.02 REMARK 500 OE2 GLU X 64 OG1 THR X 89 2.10 REMARK 500 O ILE X 130 OG SER X 133 2.11 REMARK 500 O THR X 91 O HOH X 550 2.12 REMARK 500 O ASP X 67 O HOH X 548 2.17 REMARK 500 N THR X 69 O HOH X 550 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 267 C GLU A 268 N 0.267 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 267 CA - C - N ANGL. DEV. = 23.1 DEGREES REMARK 500 PHE A 267 O - C - N ANGL. DEV. = -30.3 DEGREES REMARK 500 GLU A 268 C - N - CA ANGL. DEV. = 27.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 70 -87.84 105.69 REMARK 500 LYS X 126 107.75 -47.45 REMARK 500 ALA X 127 -55.23 164.09 REMARK 500 PRO X 135 -160.34 -63.07 REMARK 500 SER X 136 -35.71 59.78 REMARK 500 THR X 156 -63.36 -123.34 REMARK 500 TYR A 269 -78.06 -42.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 267 -23.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER X 70 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDA X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAS X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF C-TERMINAL FRAGMENT REMARK 800 FROM SERINE ACETYLTRANSFERASE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MH9 RELATED DB: PDB REMARK 900 RELATED ID: 4MIL RELATED DB: PDB DBREF 4MII X 1 316 UNP P45040 CYSK_HAEIN 1 316 DBREF 4MII A 267 272 UNP F5ZW64 F5ZW64_SALTU 267 272 SEQRES 1 X 316 MET ALA ILE TYR ALA ASP ASN SER TYR SER ILE GLY ASN SEQRES 2 X 316 THR PRO LEU VAL ARG LEU LYS HIS PHE GLY HIS ASN GLY SEQRES 3 X 316 ASN VAL VAL VAL LYS ILE GLU GLY ARG ASN PRO SER TYR SEQRES 4 X 316 SER VAL LYS CYS ARG ILE GLY ALA ASN MET VAL TRP GLN SEQRES 5 X 316 ALA GLU LYS ASP GLY THR LEU THR LYS GLY LYS GLU ILE SEQRES 6 X 316 VAL ASP ALA THR SER GLY ASN THR GLY ILE ALA LEU ALA SEQRES 7 X 316 TYR VAL ALA ALA ALA ARG GLY TYR LYS ILE THR LEU THR SEQRES 8 X 316 MET PRO GLU THR MET SER LEU GLU ARG LYS ARG LEU LEU SEQRES 9 X 316 CYS GLY LEU GLY VAL ASN LEU VAL LEU THR GLU GLY ALA SEQRES 10 X 316 LYS GLY MET LYS GLY ALA ILE ALA LYS ALA GLU GLU ILE SEQRES 11 X 316 VAL ALA SER ASP PRO SER ARG TYR VAL MET LEU LYS GLN SEQRES 12 X 316 PHE GLU ASN PRO ALA ASN PRO GLN ILE HIS ARG GLU THR SEQRES 13 X 316 THR GLY PRO GLU ILE TRP LYS ASP THR ASP GLY LYS VAL SEQRES 14 X 316 ASP VAL VAL VAL ALA GLY VAL GLY THR GLY GLY SER ILE SEQRES 15 X 316 THR GLY ILE SER ARG ALA ILE LYS LEU ASP PHE GLY LYS SEQRES 16 X 316 GLN ILE THR SER VAL ALA VAL GLU PRO VAL GLU SER PRO SEQRES 17 X 316 VAL ILE SER GLN THR LEU ALA GLY GLU GLU VAL LYS PRO SEQRES 18 X 316 GLY PRO HIS LYS ILE GLN GLY ILE GLY ALA GLY PHE ILE SEQRES 19 X 316 PRO LYS ASN LEU ASP LEU SER ILE ILE ASP ARG VAL GLU SEQRES 20 X 316 THR VAL ASP SER ASP THR ALA LEU ALA THR ALA ARG ARG SEQRES 21 X 316 LEU MET ALA GLU GLU GLY ILE LEU ALA GLY ILE SER SER SEQRES 22 X 316 GLY ALA ALA VAL ALA ALA ALA ASP ARG LEU ALA LYS LEU SEQRES 23 X 316 PRO GLU PHE ALA ASP LYS LEU ILE VAL VAL ILE LEU PRO SEQRES 24 X 316 SER ALA SER GLU ARG TYR LEU SER THR ALA LEU PHE GLU SEQRES 25 X 316 GLY ILE GLU GLY SEQRES 1 A 6 PHE GLU TYR GLY ASP GLY HET PDA X 401 21 HET GOL X 402 6 HET OAS X 403 10 HET GOL X 404 6 HETNAM PDA 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 PDA YLMETHYL)-AMINO]-PROPIONIC ACID HETNAM GOL GLYCEROL HETNAM OAS O-ACETYLSERINE HETSYN PDA PYRIDOXYL-ALANINE-5-PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PDA C11 H17 N2 O7 P FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 OAS C5 H9 N O4 FORMUL 7 HOH *53(H2 O) HELIX 1 1 ASP X 6 ILE X 11 5 6 HELIX 2 2 LYS X 42 ASP X 56 1 15 HELIX 3 3 GLY X 71 GLY X 85 1 15 HELIX 4 4 SER X 97 LEU X 107 1 11 HELIX 5 5 LYS X 118 ALA X 125 1 8 HELIX 6 6 ALA X 127 ASP X 134 1 8 HELIX 7 7 PRO X 147 THR X 156 1 10 HELIX 8 8 THR X 156 THR X 165 1 10 HELIX 9 9 GLY X 179 ASP X 192 1 14 HELIX 10 10 PRO X 208 ALA X 215 1 8 HELIX 11 11 ASP X 239 ILE X 243 5 5 HELIX 12 12 ASP X 250 GLY X 266 1 17 HELIX 13 13 GLY X 270 LYS X 285 1 16 HELIX 14 14 LEU X 286 ALA X 290 5 5 HELIX 15 15 ALA X 301 LEU X 306 5 6 SHEET 1 A 6 LEU X 16 ARG X 18 0 SHEET 2 A 6 VAL X 28 ILE X 32 -1 O VAL X 30 N VAL X 17 SHEET 3 A 6 LEU X 293 LEU X 298 1 O VAL X 296 N LYS X 31 SHEET 4 A 6 VAL X 169 GLY X 175 1 N VAL X 173 O VAL X 295 SHEET 5 A 6 THR X 198 PRO X 204 1 O VAL X 200 N VAL X 172 SHEET 6 A 6 ARG X 245 VAL X 249 1 O ARG X 245 N ALA X 201 SHEET 1 B 4 LEU X 113 THR X 114 0 SHEET 2 B 4 ILE X 88 PRO X 93 1 N MET X 92 O THR X 114 SHEET 3 B 4 GLU X 64 ALA X 68 1 N ILE X 65 O THR X 89 SHEET 4 B 4 TYR X 138 MET X 140 1 O VAL X 139 N VAL X 66 CISPEP 1 THR X 69 SER X 70 0 -5.32 CISPEP 2 ALA X 125 LYS X 126 0 7.41 CISPEP 3 TYR A 269 GLY A 270 0 3.47 SITE 1 AC1 26 LYS X 42 THR X 69 SER X 70 GLY X 71 SITE 2 AC1 26 ASN X 72 THR X 73 GLN X 143 GLY X 175 SITE 3 AC1 26 VAL X 176 GLY X 177 THR X 178 GLY X 179 SITE 4 AC1 26 GLY X 180 SER X 181 GLN X 227 GLY X 228 SITE 5 AC1 26 ILE X 229 SER X 272 PRO X 299 SER X 300 SITE 6 AC1 26 TYR X 305 OAS X 403 HOH X 509 HOH X 519 SITE 7 AC1 26 HOH X 534 HOH X 540 SITE 1 AC2 7 LEU X 214 THR X 248 ASP X 250 THR X 253 SITE 2 AC2 7 ARG X 282 HOH X 541 HOH X 546 SITE 1 AC3 9 SER X 70 MET X 96 ARG X 100 MET X 120 SITE 2 AC3 9 PHE X 144 GLY X 228 ALA X 231 PDA X 401 SITE 3 AC3 9 HOH X 540 SITE 1 AC4 6 LEU X 238 ASP X 239 LEU X 240 THR X 257 SITE 2 AC4 6 ARG X 260 HOH X 525 SITE 1 AC5 16 THR X 95 MET X 96 ALA X 117 LYS X 118 SITE 2 AC5 16 GLY X 119 MET X 120 LYS X 121 ASP X 192 SITE 3 AC5 16 GLY X 194 GLY X 222 PRO X 223 HIS X 224 SITE 4 AC5 16 LYS X 225 ALA X 231 ASP X 291 HOH X 521 CRYST1 112.643 112.643 45.898 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021787 0.00000 TER 2257 PHE X 311 TER 2293 GLY A 272 HETATM 2294 N PDA X 401 16.259 2.433 9.397 1.00 47.91 N HETATM 2295 N1 PDA X 401 13.275 6.303 9.144 1.00 33.13 N HETATM 2296 C2 PDA X 401 12.880 5.089 9.625 1.00 42.41 C HETATM 2297 C2A PDA X 401 11.655 4.932 10.471 1.00 32.71 C HETATM 2298 C3 PDA X 401 13.642 3.976 9.317 1.00 39.11 C HETATM 2299 O3A PDA X 401 13.252 2.741 9.803 1.00 37.95 O HETATM 2300 C4 PDA X 401 14.776 4.115 8.533 1.00 39.31 C HETATM 2301 C4A PDA X 401 15.602 2.894 8.199 1.00 41.54 C HETATM 2302 C5 PDA X 401 15.166 5.358 8.034 1.00 39.54 C HETATM 2303 C5A PDA X 401 16.420 5.514 7.190 1.00 31.87 C HETATM 2304 OP4 PDA X 401 16.370 4.757 6.010 1.00 39.19 O HETATM 2305 P PDA X 401 17.713 4.204 5.399 1.00 36.33 P HETATM 2306 OP1 PDA X 401 18.736 5.334 5.367 1.00 34.88 O HETATM 2307 OP2 PDA X 401 18.255 3.082 6.269 1.00 33.31 O HETATM 2308 OP3 PDA X 401 17.519 3.701 3.971 1.00 30.26 O HETATM 2309 C6 PDA X 401 14.385 6.459 8.361 1.00 36.22 C HETATM 2310 CA PDA X 401 16.331 1.004 9.265 1.00 49.64 C HETATM 2311 CB PDA X 401 17.700 0.545 9.639 1.00 54.04 C HETATM 2312 C PDA X 401 15.290 0.359 10.111 1.00 53.41 C HETATM 2313 O PDA X 401 15.494 -0.777 10.599 1.00 52.93 O HETATM 2314 OXT PDA X 401 14.204 0.958 10.350 1.00 63.04 O HETATM 2315 C1 GOL X 402 13.937 22.771 12.588 1.00 42.40 C HETATM 2316 O1 GOL X 402 14.939 21.900 13.097 1.00 43.69 O HETATM 2317 C2 GOL X 402 14.326 23.320 11.212 1.00 41.23 C HETATM 2318 O2 GOL X 402 13.135 23.649 10.514 1.00 47.97 O HETATM 2319 C3 GOL X 402 15.109 22.259 10.425 1.00 43.74 C HETATM 2320 O3 GOL X 402 15.442 22.733 9.136 1.00 46.88 O HETATM 2321 N OAS X 403 19.136 1.507 12.198 1.00 60.51 N HETATM 2322 CA OAS X 403 18.421 2.744 12.197 1.00 52.02 C HETATM 2323 CB OAS X 403 17.004 2.490 12.590 1.00 58.16 C HETATM 2324 OG OAS X 403 16.869 1.689 13.697 1.00 54.36 O HETATM 2325 C OAS X 403 19.116 3.737 13.071 1.00 55.91 C HETATM 2326 O OAS X 403 18.663 4.025 14.214 1.00 57.38 O HETATM 2327 C2A OAS X 403 14.774 2.591 14.654 1.00 58.72 C HETATM 2328 C1A OAS X 403 16.166 2.104 14.798 1.00 55.78 C HETATM 2329 OAC OAS X 403 16.746 2.217 15.869 1.00 71.55 O HETATM 2330 OXT OAS X 403 20.171 4.290 12.642 1.00 51.37 O HETATM 2331 C1 GOL X 404 32.173 7.378 1.024 1.00 54.86 C HETATM 2332 O1 GOL X 404 30.815 7.606 1.313 1.00 56.09 O HETATM 2333 C2 GOL X 404 32.268 6.718 -0.345 1.00 61.75 C HETATM 2334 O2 GOL X 404 31.179 7.082 -1.178 1.00 55.20 O HETATM 2335 C3 GOL X 404 33.602 7.103 -0.974 1.00 54.96 C HETATM 2336 O3 GOL X 404 34.602 6.493 -0.186 1.00 53.10 O HETATM 2337 O HOH X 501 8.847 7.673 9.707 1.00 31.31 O HETATM 2338 O HOH X 502 22.504 7.190 10.243 1.00 31.24 O HETATM 2339 O HOH X 503 3.703 21.377 -1.062 1.00 35.95 O HETATM 2340 O HOH X 504 2.181 7.782 -6.837 1.00 35.64 O HETATM 2341 O HOH X 505 23.065 0.744 -5.451 1.00 28.85 O HETATM 2342 O HOH X 506 6.648 7.257 -6.799 1.00 34.23 O HETATM 2343 O HOH X 507 -1.075 6.579 2.270 1.00 39.32 O HETATM 2344 O HOH X 508 22.031 -10.465 1.037 1.00 26.36 O HETATM 2345 O HOH X 509 16.977 1.067 3.036 1.00 35.60 O HETATM 2346 O HOH X 510 9.052 -2.807 8.363 1.00 34.28 O HETATM 2347 O HOH X 511 4.787 6.553 5.678 1.00 31.81 O HETATM 2348 O HOH X 512 3.746 26.093 3.739 1.00 41.27 O HETATM 2349 O HOH X 513 4.506 4.092 -6.758 1.00 40.24 O HETATM 2350 O HOH X 514 5.447 -13.462 -7.592 1.00 35.26 O HETATM 2351 O HOH X 515 14.534 19.462 19.987 1.00 39.47 O HETATM 2352 O HOH X 516 24.019 10.258 13.347 1.00 30.32 O HETATM 2353 O HOH X 517 23.663 10.938 10.687 1.00 33.15 O HETATM 2354 O HOH X 518 26.710 -0.474 -3.059 1.00 38.16 O HETATM 2355 O HOH X 519 18.683 7.209 3.247 1.00 30.26 O HETATM 2356 O HOH X 520 -0.985 7.675 5.350 1.00 33.04 O HETATM 2357 O HOH X 521 23.636 9.093 17.436 1.00 42.56 O HETATM 2358 O HOH X 522 -3.421 14.762 2.133 1.00 33.22 O HETATM 2359 O HOH X 523 -1.840 16.473 1.420 1.00 42.27 O HETATM 2360 O HOH X 524 28.887 20.190 6.795 1.00 41.10 O HETATM 2361 O HOH X 525 30.080 5.487 3.297 1.00 37.32 O HETATM 2362 O HOH X 526 23.621 17.239 -8.428 1.00 50.85 O HETATM 2363 O HOH X 527 2.049 24.197 -0.946 1.00 43.38 O HETATM 2364 O HOH X 528 14.089 17.426 23.597 1.00 49.08 O HETATM 2365 O HOH X 529 20.650 -6.708 -5.303 1.00 42.35 O HETATM 2366 O HOH X 530 15.988 -21.663 8.661 1.00 49.29 O HETATM 2367 O HOH X 531 10.374 19.806 -12.459 1.00 47.63 O HETATM 2368 O HOH X 532 10.759 7.346 12.777 1.00 38.41 O HETATM 2369 O HOH X 533 24.700 8.765 9.750 1.00 36.88 O HETATM 2370 O HOH X 534 14.224 5.441 4.277 1.00 28.72 O HETATM 2371 O HOH X 535 7.634 -18.449 -1.532 1.00 45.42 O HETATM 2372 O HOH X 536 17.269 2.333 -11.783 1.00 35.64 O HETATM 2373 O HOH X 537 23.023 22.680 6.260 1.00 52.04 O HETATM 2374 O HOH X 538 21.685 13.484 -18.743 1.00 50.75 O HETATM 2375 O HOH X 539 16.742 -9.866 25.226 1.00 65.85 O HETATM 2376 O HOH X 540 13.251 2.027 12.114 1.00 40.82 O HETATM 2377 O HOH X 541 11.311 23.096 9.242 1.00 34.74 O HETATM 2378 O HOH X 542 20.946 10.598 10.138 1.00 34.04 O HETATM 2379 O HOH X 543 13.192 10.165 5.009 1.00 28.06 O HETATM 2380 O HOH X 544 13.701 10.524 7.532 1.00 29.99 O HETATM 2381 O HOH X 545 14.779 8.137 4.331 1.00 32.18 O HETATM 2382 O HOH X 546 17.456 22.312 13.321 1.00 34.71 O HETATM 2383 O HOH X 547 19.459 22.439 12.039 1.00 42.20 O HETATM 2384 O HOH X 548 20.319 -9.668 15.275 1.00 64.06 O HETATM 2385 O HOH X 549 21.235 22.431 8.268 1.00 50.93 O HETATM 2386 O HOH X 550 19.649 -6.243 15.689 1.00 68.56 O HETATM 2387 O HOH X 551 1.762 6.863 6.235 1.00 41.48 O HETATM 2388 O HOH X 552 10.174 28.770 -2.471 1.00 44.21 O HETATM 2389 O HOH X 553 22.723 -1.258 22.143 1.00 57.15 O CONECT 2294 2301 2310 CONECT 2295 2296 2309 CONECT 2296 2295 2297 2298 CONECT 2297 2296 CONECT 2298 2296 2299 2300 CONECT 2299 2298 CONECT 2300 2298 2301 2302 CONECT 2301 2294 2300 CONECT 2302 2300 2303 2309 CONECT 2303 2302 2304 CONECT 2304 2303 2305 CONECT 2305 2304 2306 2307 2308 CONECT 2306 2305 CONECT 2307 2305 CONECT 2308 2305 CONECT 2309 2295 2302 CONECT 2310 2294 2311 2312 CONECT 2311 2310 CONECT 2312 2310 2313 2314 CONECT 2313 2312 CONECT 2314 2312 CONECT 2315 2316 2317 CONECT 2316 2315 CONECT 2317 2315 2318 2319 CONECT 2318 2317 CONECT 2319 2317 2320 CONECT 2320 2319 CONECT 2321 2322 CONECT 2322 2321 2323 2325 CONECT 2323 2322 2324 CONECT 2324 2323 2328 CONECT 2325 2322 2326 2330 CONECT 2326 2325 CONECT 2327 2328 CONECT 2328 2324 2327 2329 CONECT 2329 2328 CONECT 2330 2325 CONECT 2331 2332 2333 CONECT 2332 2331 CONECT 2333 2331 2334 2335 CONECT 2334 2333 CONECT 2335 2333 2336 CONECT 2336 2335 MASTER 385 0 4 15 10 0 18 6 2387 2 43 26 END