HEADER TRANSPORT PROTEIN 31-AUG-13 4MIJ TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 POLAROMONAS SP. JS666 (BPRO_3107), TARGET EFI-510173, WITH BOUND TITLE 3 ALPHA/BETA D-GALACTURONATE, SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLAROMONAS; SOURCE 3 ORGANISM_TAXID: 296591; SOURCE 4 STRAIN: JS666 / ATCC BAA-500; SOURCE 5 GENE: BPRO_3107; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,S.ZHAO,M.STEAD,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY, AUTHOR 3 B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER, AUTHOR 4 M.P.JACOBSON,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 5 20-SEP-23 4MIJ 1 HETSYN REVDAT 4 29-JUL-20 4MIJ 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE ATOM REVDAT 3 14-OCT-15 4MIJ 1 HETNAM HETSYN REVDAT 2 25-FEB-15 4MIJ 1 JRNL REVDAT 1 18-SEP-13 4MIJ 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 104014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6826 - 3.4169 0.99 3478 176 0.1355 0.1492 REMARK 3 2 3.4169 - 2.7124 1.00 3401 187 0.1299 0.1476 REMARK 3 3 2.7124 - 2.3697 1.00 3412 183 0.1277 0.1533 REMARK 3 4 2.3697 - 2.1530 1.00 3415 164 0.1159 0.1248 REMARK 3 5 2.1530 - 1.9987 1.00 3363 192 0.1215 0.1397 REMARK 3 6 1.9987 - 1.8809 1.00 3386 198 0.1304 0.1380 REMARK 3 7 1.8809 - 1.7867 1.00 3365 195 0.1278 0.1418 REMARK 3 8 1.7867 - 1.7089 1.00 3358 173 0.1272 0.1411 REMARK 3 9 1.7089 - 1.6431 1.00 3395 166 0.1231 0.1350 REMARK 3 10 1.6431 - 1.5864 1.00 3372 183 0.1214 0.1287 REMARK 3 11 1.5864 - 1.5368 1.00 3366 176 0.1229 0.1382 REMARK 3 12 1.5368 - 1.4929 1.00 3359 183 0.1254 0.1484 REMARK 3 13 1.4929 - 1.4536 1.00 3412 158 0.1275 0.1504 REMARK 3 14 1.4536 - 1.4181 1.00 3357 184 0.1364 0.1286 REMARK 3 15 1.4181 - 1.3859 1.00 3340 172 0.1367 0.1543 REMARK 3 16 1.3859 - 1.3564 1.00 3376 182 0.1415 0.1489 REMARK 3 17 1.3564 - 1.3293 1.00 3378 192 0.1483 0.1751 REMARK 3 18 1.3293 - 1.3042 1.00 3357 162 0.1482 0.1379 REMARK 3 19 1.3042 - 1.2809 1.00 3359 191 0.1521 0.1570 REMARK 3 20 1.2809 - 1.2592 1.00 3412 143 0.1597 0.1537 REMARK 3 21 1.2592 - 1.2389 1.00 3356 168 0.1680 0.1925 REMARK 3 22 1.2389 - 1.2198 1.00 3366 161 0.1708 0.2098 REMARK 3 23 1.2198 - 1.2019 1.00 3326 199 0.1704 0.1866 REMARK 3 24 1.2019 - 1.1849 1.00 3335 190 0.1704 0.1751 REMARK 3 25 1.1849 - 1.1689 1.00 3371 189 0.1748 0.1765 REMARK 3 26 1.1689 - 1.1537 1.00 3341 179 0.1916 0.2008 REMARK 3 27 1.1537 - 1.1393 0.97 3261 150 0.2158 0.2421 REMARK 3 28 1.1393 - 1.1256 0.85 2887 142 0.2292 0.2395 REMARK 3 29 1.1256 - 1.1125 0.77 2567 125 0.2400 0.2816 REMARK 3 30 1.1125 - 1.1000 0.70 2356 124 0.2595 0.2757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2484 REMARK 3 ANGLE : 1.287 3366 REMARK 3 CHIRALITY : 0.077 380 REMARK 3 PLANARITY : 0.008 437 REMARK 3 DIHEDRAL : 12.126 952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 31:86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7729 19.9744 45.9886 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.0946 REMARK 3 T33: 0.0955 T12: 0.0001 REMARK 3 T13: 0.0054 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.7167 L22: 0.7532 REMARK 3 L33: 0.3661 L12: 0.2536 REMARK 3 L13: -0.2607 L23: -0.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0116 S13: 0.0226 REMARK 3 S21: 0.0022 S22: -0.0124 S23: 0.0975 REMARK 3 S31: -0.0054 S32: -0.0561 S33: 0.0086 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 87:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1290 20.8769 50.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.0730 REMARK 3 T33: 0.0706 T12: -0.0039 REMARK 3 T13: 0.0002 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.4757 L22: 0.3234 REMARK 3 L33: 0.5796 L12: -0.0155 REMARK 3 L13: 0.2656 L23: 0.0540 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0255 S13: -0.0120 REMARK 3 S21: 0.0232 S22: -0.0114 S23: -0.0229 REMARK 3 S31: -0.0148 S32: 0.0252 S33: 0.0252 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 179:254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4645 30.0198 51.6819 REMARK 3 T TENSOR REMARK 3 T11: 0.0776 T22: 0.0621 REMARK 3 T33: 0.0601 T12: 0.0039 REMARK 3 T13: 0.0023 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4837 L22: 0.3928 REMARK 3 L33: 0.4581 L12: 0.1420 REMARK 3 L13: 0.1422 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.0090 S13: 0.0429 REMARK 3 S21: 0.0432 S22: -0.0019 S23: -0.0008 REMARK 3 S31: -0.0804 S32: -0.0017 S33: 0.0272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 255:289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4003 19.8366 37.6951 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0865 REMARK 3 T33: 0.0713 T12: -0.0002 REMARK 3 T13: -0.0016 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8160 L22: 1.4532 REMARK 3 L33: 0.4078 L12: 0.6540 REMARK 3 L13: -0.0770 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0296 S13: -0.0334 REMARK 3 S21: -0.0657 S22: -0.0109 S23: -0.0141 REMARK 3 S31: 0.0308 S32: -0.0001 S33: 0.0409 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 290:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3352 33.1870 45.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1674 REMARK 3 T33: 0.1609 T12: -0.0061 REMARK 3 T13: -0.0004 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.5976 L22: 1.9002 REMARK 3 L33: 1.1557 L12: -1.7461 REMARK 3 L13: 1.3665 L23: -1.4727 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.2959 S13: 0.2089 REMARK 3 S21: -0.1320 S22: -0.2457 S23: -0.2296 REMARK 3 S31: 0.0110 S32: 0.2939 S33: 0.1838 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 306:332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0148 12.6230 52.9633 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.1081 REMARK 3 T33: 0.1138 T12: 0.0015 REMARK 3 T13: -0.0167 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.0047 L22: 1.2191 REMARK 3 L33: 1.0560 L12: 0.1635 REMARK 3 L13: -0.1630 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: 0.0455 S13: -0.0924 REMARK 3 S21: 0.0126 S22: 0.0404 S23: -0.0452 REMARK 3 S31: 0.1479 S32: -0.0105 S33: -0.0649 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 63.341 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : 0.29900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 4LN5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (50 MG/ML, 10 MM HEPES, PH REMARK 280 7.5, 10 MM GALACTURONATE, 5 MM DTT); RESERVOIR (0.8 M LITHIUM REMARK 280 CHLORIDE, 0.1 M TRIS, PH 8.5, 32 %(W/V) PEG 4000, (MCSG1 C9)); REMARK 280 CRYOPROTECTION (20% ETHYLENE GLYCOL, 80% OF RESERVOIR), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.07000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 ILE A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 GLY A 24 REMARK 465 MET A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 ALA A 30 REMARK 465 ASN A 333 REMARK 465 LEU A 334 REMARK 465 TYR A 335 REMARK 465 PHE A 336 REMARK 465 GLY A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 216 HO1 EDO A 402 1.03 REMARK 500 H ILE A 216 HO1 EDO A 402 1.14 REMARK 500 H SER A 117 HD1 HIS A 121 1.32 REMARK 500 HZ1 LYS A 252 O HOH A 698 1.58 REMARK 500 NE2 GLN A 177 O HOH A 814 1.75 REMARK 500 O HOH A 629 O HOH A 839 1.87 REMARK 500 OE1 GLU A 199 O HOH A 870 1.95 REMARK 500 O HOH A 865 O HOH A 904 1.97 REMARK 500 O HOH A 783 O HOH A 874 2.01 REMARK 500 O HOH A 874 O HOH A 951 2.05 REMARK 500 O HOH A 794 O HOH A 905 2.08 REMARK 500 O HOH A 720 O HOH A 941 2.09 REMARK 500 O HOH A 778 O HOH A 968 2.09 REMARK 500 O HOH A 965 O HOH A 968 2.12 REMARK 500 O HOH A 830 O HOH A 948 2.13 REMARK 500 NE2 GLN A 303 O HOH A 886 2.14 REMARK 500 O HOH A 929 O HOH A 951 2.15 REMARK 500 O HOH A 854 O HOH A 888 2.15 REMARK 500 NZ LYS A 252 O HOH A 698 2.15 REMARK 500 O HOH A 687 O HOH A 809 2.16 REMARK 500 O HOH A 932 O HOH A 966 2.17 REMARK 500 O HOH A 890 O HOH A 975 2.19 REMARK 500 O HOH A 925 O HOH A 979 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 998 O HOH A 1000 1545 1.83 REMARK 500 O HOH A 870 O HOH A 888 2657 1.91 REMARK 500 O HOH A 740 O HOH A 998 1565 1.95 REMARK 500 O HOH A 904 O HOH A 1000 1545 2.03 REMARK 500 O HOH A 737 O HOH A 775 2757 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 239 114.63 -36.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MHF RELATED DB: PDB REMARK 900 RELATED ID: EFI-510173 RELATED DB: TARGETTRACK DBREF 4MIJ A 1 330 UNP Q128M1 Q128M1_POLSJ 1 330 SEQADV 4MIJ ALA A 331 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ GLU A 332 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ ASN A 333 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ LEU A 334 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ TYR A 335 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ PHE A 336 UNP Q128M1 EXPRESSION TAG SEQADV 4MIJ GLY A 337 UNP Q128M1 EXPRESSION TAG SEQRES 1 A 337 MET THR ASN ARG THR PRO ARG ILE SER ALA ILE ARG SER SEQRES 2 A 337 ALA ALA LEU ALA ALA LEU LEU ALA GLY LEU GLY MET GLY SEQRES 3 A 337 ALA ALA GLN ALA THR GLU PHE ARG SER ALA ASP THR HIS SEQRES 4 A 337 ASN ALA ASP ASP TYR PRO THR VAL ALA ALA VAL LYS TYR SEQRES 5 A 337 MET GLY GLU LEU LEU GLU LYS LYS SER GLY GLY LYS HIS SEQRES 6 A 337 LYS ILE LYS VAL PHE ASN LYS GLN ALA LEU GLY SER GLU SEQRES 7 A 337 LYS GLU THR ILE ASP GLN VAL LYS ILE GLY ALA LEU ASP SEQRES 8 A 337 PHE THR ARG VAL ASN VAL GLY PRO MET ASN ALA ILE CYS SEQRES 9 A 337 PRO LEU THR GLN VAL PRO THR MET PRO PHE LEU PHE SER SEQRES 10 A 337 SER ILE ALA HIS MET ARG LYS SER LEU ASP GLY PRO VAL SEQRES 11 A 337 GLY ASP GLU ILE LEU LYS SER CYS GLU SER ALA GLY PHE SEQRES 12 A 337 ILE GLY LEU ALA PHE TYR ASP SER GLY ALA ARG SER ILE SEQRES 13 A 337 TYR ALA LYS LYS PRO ILE ARG THR VAL ALA ASP ALA LYS SEQRES 14 A 337 GLY LEU LYS ILE ARG VAL GLN GLN SER ASP LEU TRP VAL SEQRES 15 A 337 ALA LEU VAL SER ALA MET GLY ALA ASN ALA THR PRO MET SEQRES 16 A 337 PRO TYR GLY GLU VAL TYR THR GLY LEU LYS THR GLY LEU SEQRES 17 A 337 ILE ASP ALA ALA GLU ASN ASN ILE PRO SER PHE ASP THR SEQRES 18 A 337 ALA LYS HIS VAL GLU ALA VAL LYS VAL TYR SER LYS THR SEQRES 19 A 337 GLU HIS SER MET ALA PRO GLU ILE LEU VAL MET SER LYS SEQRES 20 A 337 ILE ILE TYR ASP LYS LEU PRO LYS ALA GLU GLN ASP MET SEQRES 21 A 337 ILE ARG ALA ALA ALA LYS GLU SER VAL ALA PHE GLU ARG SEQRES 22 A 337 GLN LYS TRP ASP GLU GLN GLU ALA LYS SER LEU ALA ASN SEQRES 23 A 337 VAL LYS ALA ALA GLY ALA GLU ILE VAL GLU VAL ASP LYS SEQRES 24 A 337 LYS SER PHE GLN ALA VAL MET GLY PRO VAL TYR ASP LYS SEQRES 25 A 337 PHE MET THR THR PRO ASP MET LYS ARG LEU VAL LYS ALA SEQRES 26 A 337 VAL GLN ASP THR LYS ALA GLU ASN LEU TYR PHE GLY HET CL A 401 1 HET EDO A 402 10 HET CL A 403 1 HET CL A 404 1 HET GTR A 405 13 HET ADA A 406 13 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GTR BETA-D-GALACTOPYRANURONIC ACID HETNAM ADA ALPHA-D-GALACTOPYRANURONIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN GTR BETA-D-GALACTURONIC ACID; D-GALACTURONIC ACID; HETSYN 2 GTR GALACTURONIC ACID HETSYN ADA ALPHA-D-GALACTURONIC ACID; D-GALACTURONIC ACID; HETSYN 2 ADA GALACTURONIC ACID; ALPHA D-GALACTURONIC ACID FORMUL 2 CL 3(CL 1-) FORMUL 3 EDO C2 H6 O2 FORMUL 6 GTR C6 H10 O7 FORMUL 7 ADA C6 H10 O7 FORMUL 8 HOH *502(H2 O) HELIX 1 1 TYR A 44 SER A 61 1 18 HELIX 2 2 SER A 77 ILE A 87 1 11 HELIX 3 3 GLY A 98 ASN A 101 5 4 HELIX 4 4 CYS A 104 LEU A 106 5 3 HELIX 5 5 THR A 107 MET A 112 1 6 HELIX 6 6 SER A 118 GLY A 128 1 11 HELIX 7 7 GLY A 128 CYS A 138 1 11 HELIX 8 8 GLU A 139 ALA A 141 5 3 HELIX 9 9 THR A 164 LYS A 169 1 6 HELIX 10 10 SER A 178 ALA A 187 1 10 HELIX 11 11 PRO A 196 GLY A 198 5 3 HELIX 12 12 GLU A 199 THR A 206 1 8 HELIX 13 13 ASN A 215 ALA A 222 1 8 HELIX 14 14 LYS A 223 VAL A 228 1 6 HELIX 15 15 LYS A 247 LEU A 253 1 7 HELIX 16 16 PRO A 254 ALA A 290 1 37 HELIX 17 17 ASP A 298 ALA A 304 1 7 HELIX 18 18 MET A 306 MET A 314 1 9 HELIX 19 19 THR A 316 ASP A 328 1 13 SHEET 1 A 5 LYS A 66 PHE A 70 0 SHEET 2 A 5 GLU A 32 ALA A 36 1 N SER A 35 O PHE A 70 SHEET 3 A 5 PHE A 92 ASN A 96 1 O ARG A 94 N ALA A 36 SHEET 4 A 5 GLU A 241 SER A 246 -1 O ILE A 242 N VAL A 95 SHEET 5 A 5 PHE A 143 TYR A 149 -1 N ILE A 144 O MET A 245 SHEET 1 B 4 ALA A 211 ASN A 214 0 SHEET 2 B 4 ARG A 154 ALA A 158 -1 N TYR A 157 O ALA A 212 SHEET 3 B 4 VAL A 230 SER A 237 -1 O SER A 237 N ARG A 154 SHEET 4 B 4 GLU A 293 VAL A 295 1 O VAL A 295 N TYR A 231 SHEET 1 C 2 LYS A 172 VAL A 175 0 SHEET 2 C 2 ASN A 191 PRO A 194 1 O THR A 193 N ILE A 173 SSBOND 1 CYS A 104 CYS A 138 1555 1555 2.06 CRYST1 45.534 46.140 63.897 90.00 97.56 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021962 0.000000 0.002915 0.00000 SCALE2 0.000000 0.021673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015787 0.00000