HEADER TRANSFERASE 02-SEP-13 4MIX TITLE PATOXG GLYCOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE INSECTICIDAL TOXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2114-2449; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS ASYMBIOTICA SUBSP. ASYMBIOTICA; SOURCE 3 ORGANISM_TAXID: 553480; SOURCE 4 STRAIN: ATCC 43949 / 3105-77; SOURCE 5 GENE: PAU_02230; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21* CDONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TYROSINE GLYCOSYLATION, UDP-GLCNAC, NUCLEOTIDE-BINDING DOMAIN A/B/A, KEYWDS 2 ROSSMANN-LIKE, GLYCOSYLTRANSFERASE, RHO-PROTEINS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.BOGDANOVIC,C.WIRTH,C.HUNTE REVDAT 4 15-NOV-17 4MIX 1 REMARK REVDAT 3 20-NOV-13 4MIX 1 JRNL REVDAT 2 06-NOV-13 4MIX 1 JRNL REVDAT 1 16-OCT-13 4MIX 0 JRNL AUTH T.JANK,X.BOGDANOVIC,C.WIRTH,E.HAAF,M.SPOERNER,K.E.BOHMER, JRNL AUTH 2 M.STEINEMANN,J.H.ORTH,H.R.KALBITZER,B.WARSCHEID,C.HUNTE, JRNL AUTH 3 K.AKTORIES JRNL TITL A BACTERIAL TOXIN CATALYZING TYROSINE GLYCOSYLATION OF RHO JRNL TITL 2 AND DEAMIDATION OF GQ AND GI PROTEINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 1273 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 24141704 JRNL DOI 10.1038/NSMB.2688 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 61067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4431 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4327 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4657 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6352 ; 1.284 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;33.954 ;25.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;13.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3487 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4MIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR, DYNAMICALLY REMARK 200 BENDABLE MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 57.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.02290 REMARK 200 R SYM FOR SHELL (I) : 0.02450 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL - PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 500 MM NACL, 100 MM TRIS REMARK 280 -HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.06350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.06350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2114 REMARK 465 GLU A 2115 REMARK 465 TRP A 2116 REMARK 465 PHE A 2117 REMARK 465 LYS A 2118 REMARK 465 HIS A 2119 REMARK 465 SER A 2120 REMARK 465 GLU A 2121 REMARK 465 THR A 2122 REMARK 465 GLY A 2123 REMARK 465 LEU A 2124 REMARK 465 LYS A 2125 REMARK 465 GLY A 2126 REMARK 465 GLY A 2127 REMARK 465 GLY A 2128 REMARK 465 PRO A 2129 REMARK 465 ILE A 2130 REMARK 465 ALA A 2301 REMARK 465 PRO A 2302 REMARK 465 GLU A 2303 REMARK 465 ALA A 2304 REMARK 465 GLY A 2305 REMARK 465 LYS A 2306 REMARK 465 ALA A 2307 REMARK 465 GLU A 2387 REMARK 465 LYS A 2388 REMARK 465 PRO A 2389 REMARK 465 LYS A 2390 REMARK 465 ASN A 2391 REMARK 465 PHE A 2392 REMARK 465 ALA A 2393 REMARK 465 ASP A 2394 REMARK 465 GLY A 2422 REMARK 465 ALA A 2423 REMARK 465 ASP A 2424 REMARK 465 HIS A 2425 REMARK 465 SER A 2426 REMARK 465 TRP A 2427 REMARK 465 ALA A 2428 REMARK 465 VAL A 2429 REMARK 465 ASP A 2430 REMARK 465 THR A 2431 REMARK 465 ASN A 2432 REMARK 465 ILE A 2433 REMARK 465 PRO A 2434 REMARK 465 SER A 2435 REMARK 465 THR A 2436 REMARK 465 SER A 2437 REMARK 465 THR A 2438 REMARK 465 GLN A 2439 REMARK 465 THR A 2440 REMARK 465 SER A 2441 REMARK 465 THR A 2442 REMARK 465 ILE A 2443 REMARK 465 VAL A 2444 REMARK 465 THR A 2445 REMARK 465 PRO A 2446 REMARK 465 LEU A 2447 REMARK 465 ALA A 2448 REMARK 465 PRO A 2449 REMARK 465 GLY B 2114 REMARK 465 GLU B 2115 REMARK 465 TRP B 2116 REMARK 465 PHE B 2117 REMARK 465 LYS B 2118 REMARK 465 HIS B 2119 REMARK 465 SER B 2120 REMARK 465 GLU B 2121 REMARK 465 THR B 2122 REMARK 465 GLY B 2123 REMARK 465 LEU B 2124 REMARK 465 LYS B 2125 REMARK 465 GLY B 2126 REMARK 465 GLY B 2127 REMARK 465 GLY B 2128 REMARK 465 PRO B 2129 REMARK 465 ILE B 2130 REMARK 465 ASP B 2131 REMARK 465 GLU B 2303 REMARK 465 ALA B 2304 REMARK 465 GLY B 2305 REMARK 465 LYS B 2306 REMARK 465 LEU B 2386 REMARK 465 GLU B 2387 REMARK 465 LYS B 2388 REMARK 465 PRO B 2389 REMARK 465 LYS B 2390 REMARK 465 ASN B 2391 REMARK 465 PHE B 2392 REMARK 465 ALA B 2393 REMARK 465 ASN B 2421 REMARK 465 GLY B 2422 REMARK 465 ALA B 2423 REMARK 465 ASP B 2424 REMARK 465 HIS B 2425 REMARK 465 SER B 2426 REMARK 465 TRP B 2427 REMARK 465 ALA B 2428 REMARK 465 VAL B 2429 REMARK 465 ASP B 2430 REMARK 465 THR B 2431 REMARK 465 ASN B 2432 REMARK 465 ILE B 2433 REMARK 465 PRO B 2434 REMARK 465 SER B 2435 REMARK 465 THR B 2436 REMARK 465 SER B 2437 REMARK 465 THR B 2438 REMARK 465 GLN B 2439 REMARK 465 THR B 2440 REMARK 465 SER B 2441 REMARK 465 THR B 2442 REMARK 465 ILE B 2443 REMARK 465 VAL B 2444 REMARK 465 THR B 2445 REMARK 465 PRO B 2446 REMARK 465 LEU B 2447 REMARK 465 ALA B 2448 REMARK 465 PRO B 2449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A2131 CG OD1 OD2 REMARK 470 ASP A2132 CG OD1 OD2 REMARK 470 LYS A2135 CG CD CE NZ REMARK 470 GLN A2148 CG CD OE1 NE2 REMARK 470 LYS A2182 CG CD CE NZ REMARK 470 GLU A2216 CG CD OE1 OE2 REMARK 470 THR A2308 OG1 CG2 REMARK 470 LYS A2340 CG CD CE NZ REMARK 470 LYS A2365 CG CD CE NZ REMARK 470 GLN A2370 CG CD OE1 NE2 REMARK 470 GLU A2395 CG CD OE1 OE2 REMARK 470 GLU A2420 CG CD OE1 OE2 REMARK 470 ASN A2421 CG OD1 ND2 REMARK 470 ASP B2132 CG OD1 OD2 REMARK 470 ILE B2133 CG1 CG2 CD1 REMARK 470 ARG B2134 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2135 CG CD CE NZ REMARK 470 LYS B2140 CG CD CE NZ REMARK 470 LYS B2144 CG CD CE NZ REMARK 470 GLU B2178 CG CD OE1 OE2 REMARK 470 GLU B2216 CG CD OE1 OE2 REMARK 470 THR B2308 OG1 CG2 REMARK 470 ASP B2349 CG OD1 OD2 REMARK 470 GLN B2370 CG CD OE1 NE2 REMARK 470 ASP B2394 CG OD1 OD2 REMARK 470 GLN B2396 CG CD OE1 NE2 REMARK 470 SER B2399 OG REMARK 470 GLU B2420 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A2220 44.72 -97.77 REMARK 500 ASN A2312 30.80 -93.28 REMARK 500 THR A2313 138.37 -170.79 REMARK 500 ALA A2346 25.96 -141.77 REMARK 500 ALA B2346 23.24 -140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UD1 A2502 O1A REMARK 620 2 UD1 A2502 O2B 72.2 REMARK 620 3 ASP A2276 OD2 104.8 128.0 REMARK 620 4 ASP A2278 OD2 75.2 117.2 111.4 REMARK 620 5 ASP A2278 OD1 107.0 156.8 75.1 43.5 REMARK 620 6 HOH A2664 O 161.2 123.6 74.4 87.6 54.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UD1 B2501 O1A REMARK 620 2 ASP B2276 OD2 116.0 REMARK 620 3 ASP B2278 OD2 97.1 117.3 REMARK 620 4 ASP B2278 OD1 75.4 94.9 42.4 REMARK 620 5 UD1 B2501 O1B 60.3 129.2 113.3 126.9 REMARK 620 6 HOH B2704 O 153.4 72.5 58.5 78.9 135.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2502 DBREF 4MIX A 2114 2449 UNP C7BKP9 C7BKP9_PHOAA 2114 2449 DBREF 4MIX B 2114 2449 UNP C7BKP9 C7BKP9_PHOAA 2114 2449 SEQRES 1 A 336 GLY GLU TRP PHE LYS HIS SER GLU THR GLY LEU LYS GLY SEQRES 2 A 336 GLY GLY PRO ILE ASP ASP ILE ARG LYS TYR ILE ALA ARG SEQRES 3 A 336 LYS SER ALA ILE LYS ILE PHE ASN GLN SER ILE ASN TYR SEQRES 4 A 336 SER ALA THR LYS TRP PRO PRO GLU PRO ILE ASP LYS ASN SEQRES 5 A 336 ILE HIS MSE ILE TRP ILE GLY THR LYS ASN ILE SER GLU SEQRES 6 A 336 LYS ASN ILE LYS LEU SER ILE ASP THR ALA LYS LYS ASN SEQRES 7 A 336 PRO ASP TYR ASN THR SER ILE ILE TYR ASP SER GLY ILE SEQRES 8 A 336 SER GLY HIS GLU GLY ALA LYS LYS PHE MSE LEU GLU LYS SEQRES 9 A 336 PHE GLN ASP SER ASN VAL ASN ILE ILE ASP PHE ARG LYS SEQRES 10 A 336 LYS SER TYR PHE SER GLN LEU LYS GLN GLU PRO SER PHE SEQRES 11 A 336 ALA TYR TYR GLU GLN VAL ILE ALA GLU ASN LYS TYR ALA SEQRES 12 A 336 GLN ALA SER ASP ILE LEU ARG LEU LEU VAL LEU LYS TYR SEQRES 13 A 336 GLU GLY GLY ILE TYR LYS ASP ILE ASP ASP ILE GLN VAL SEQRES 14 A 336 LYS GLY PHE GLY SER LEU THR PHE PRO LYS GLY ILE GLY SEQRES 15 A 336 VAL MSE ARG GLU TYR ALA PRO GLU ALA GLY LYS ALA THR SEQRES 16 A 336 ALA PHE PRO ASN THR PRO ILE ALA VAL THR LYS ASN ASN SEQRES 17 A 336 PRO ILE ILE ASN LYS THR LEU ASP LEU ALA VAL SER ASN SEQRES 18 A 336 TYR GLN ARG GLY GLU LYS ASN VAL LEU LYS LEU ALA GLY SEQRES 19 A 336 PRO ASP VAL PHE THR GLN ALA LEU TYR GLN GLU ILE PRO SEQRES 20 A 336 GLY LEU ASP SER LYS VAL LEU ASN ALA GLN LEU TYR GLN SEQRES 21 A 336 LEU GLU LEU ALA LYS ARG GLN ALA LEU GLY VAL PRO LEU SEQRES 22 A 336 GLU LYS PRO LYS ASN PHE ALA ASP GLU GLN LEU THR SER SEQRES 23 A 336 ALA GLU LYS GLU LYS ILE ASN ARG PRO TYR GLN SER ILE SEQRES 24 A 336 ARG GLY LEU SER GLY TYR VAL GLU ASN GLY ALA ASP HIS SEQRES 25 A 336 SER TRP ALA VAL ASP THR ASN ILE PRO SER THR SER THR SEQRES 26 A 336 GLN THR SER THR ILE VAL THR PRO LEU ALA PRO SEQRES 1 B 336 GLY GLU TRP PHE LYS HIS SER GLU THR GLY LEU LYS GLY SEQRES 2 B 336 GLY GLY PRO ILE ASP ASP ILE ARG LYS TYR ILE ALA ARG SEQRES 3 B 336 LYS SER ALA ILE LYS ILE PHE ASN GLN SER ILE ASN TYR SEQRES 4 B 336 SER ALA THR LYS TRP PRO PRO GLU PRO ILE ASP LYS ASN SEQRES 5 B 336 ILE HIS MSE ILE TRP ILE GLY THR LYS ASN ILE SER GLU SEQRES 6 B 336 LYS ASN ILE LYS LEU SER ILE ASP THR ALA LYS LYS ASN SEQRES 7 B 336 PRO ASP TYR ASN THR SER ILE ILE TYR ASP SER GLY ILE SEQRES 8 B 336 SER GLY HIS GLU GLY ALA LYS LYS PHE MSE LEU GLU LYS SEQRES 9 B 336 PHE GLN ASP SER ASN VAL ASN ILE ILE ASP PHE ARG LYS SEQRES 10 B 336 LYS SER TYR PHE SER GLN LEU LYS GLN GLU PRO SER PHE SEQRES 11 B 336 ALA TYR TYR GLU GLN VAL ILE ALA GLU ASN LYS TYR ALA SEQRES 12 B 336 GLN ALA SER ASP ILE LEU ARG LEU LEU VAL LEU LYS TYR SEQRES 13 B 336 GLU GLY GLY ILE TYR LYS ASP ILE ASP ASP ILE GLN VAL SEQRES 14 B 336 LYS GLY PHE GLY SER LEU THR PHE PRO LYS GLY ILE GLY SEQRES 15 B 336 VAL MSE ARG GLU TYR ALA PRO GLU ALA GLY LYS ALA THR SEQRES 16 B 336 ALA PHE PRO ASN THR PRO ILE ALA VAL THR LYS ASN ASN SEQRES 17 B 336 PRO ILE ILE ASN LYS THR LEU ASP LEU ALA VAL SER ASN SEQRES 18 B 336 TYR GLN ARG GLY GLU LYS ASN VAL LEU LYS LEU ALA GLY SEQRES 19 B 336 PRO ASP VAL PHE THR GLN ALA LEU TYR GLN GLU ILE PRO SEQRES 20 B 336 GLY LEU ASP SER LYS VAL LEU ASN ALA GLN LEU TYR GLN SEQRES 21 B 336 LEU GLU LEU ALA LYS ARG GLN ALA LEU GLY VAL PRO LEU SEQRES 22 B 336 GLU LYS PRO LYS ASN PHE ALA ASP GLU GLN LEU THR SER SEQRES 23 B 336 ALA GLU LYS GLU LYS ILE ASN ARG PRO TYR GLN SER ILE SEQRES 24 B 336 ARG GLY LEU SER GLY TYR VAL GLU ASN GLY ALA ASP HIS SEQRES 25 B 336 SER TRP ALA VAL ASP THR ASN ILE PRO SER THR SER THR SEQRES 26 B 336 GLN THR SER THR ILE VAL THR PRO LEU ALA PRO MODRES 4MIX MSE A 2168 MET SELENOMETHIONINE MODRES 4MIX MSE A 2214 MET SELENOMETHIONINE MODRES 4MIX MSE A 2297 MET SELENOMETHIONINE MODRES 4MIX MSE B 2168 MET SELENOMETHIONINE MODRES 4MIX MSE B 2214 MET SELENOMETHIONINE MODRES 4MIX MSE B 2297 MET SELENOMETHIONINE HET MSE A2168 8 HET MSE A2214 8 HET MSE A2297 13 HET MSE B2168 8 HET MSE B2214 8 HET MSE B2297 13 HET CA A2501 1 HET UD1 A2502 39 HET UD1 B2501 39 HET CA B2502 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 4 UD1 2(C17 H27 N3 O17 P2) FORMUL 7 HOH *208(H2 O) HELIX 1 1 ASP A 2131 ALA A 2154 1 24 HELIX 2 2 SER A 2177 LYS A 2190 1 14 HELIX 3 3 HIS A 2207 GLN A 2219 1 13 HELIX 4 4 ARG A 2229 LYS A 2231 5 3 HELIX 5 5 TYR A 2233 GLN A 2239 5 7 HELIX 6 6 GLU A 2240 GLU A 2252 1 13 HELIX 7 7 LYS A 2254 GLY A 2271 1 18 HELIX 8 8 ASN A 2321 GLY A 2338 1 18 HELIX 9 9 VAL A 2342 GLY A 2347 1 6 HELIX 10 10 GLY A 2347 ILE A 2359 1 13 HELIX 11 11 PRO A 2360 LEU A 2362 5 3 HELIX 12 12 ASP A 2363 GLY A 2383 1 21 HELIX 13 13 THR A 2398 ARG A 2413 1 16 HELIX 14 14 ILE B 2133 ALA B 2154 1 22 HELIX 15 15 SER B 2177 LYS B 2190 1 14 HELIX 16 16 HIS B 2207 PHE B 2218 1 12 HELIX 17 17 ARG B 2229 LYS B 2231 5 3 HELIX 18 18 TYR B 2233 GLN B 2239 5 7 HELIX 19 19 GLU B 2240 GLU B 2252 1 13 HELIX 20 20 LYS B 2254 GLY B 2271 1 18 HELIX 21 21 ASN B 2321 GLY B 2338 1 18 HELIX 22 22 VAL B 2342 GLY B 2347 1 6 HELIX 23 23 GLY B 2347 ILE B 2359 1 13 HELIX 24 24 PRO B 2360 LEU B 2362 5 3 HELIX 25 25 ASP B 2363 GLY B 2383 1 21 HELIX 26 26 THR B 2398 ARG B 2413 1 16 SHEET 1 A 2 GLU A2160 PRO A2161 0 SHEET 2 A 2 THR A2289 PHE A2290 -1 O PHE A2290 N GLU A2160 SHEET 1 B 6 VAL A2223 ASP A2227 0 SHEET 2 B 6 ASN A2195 TYR A2200 1 N ILE A2198 O ASN A2224 SHEET 3 B 6 ASN A2165 ILE A2169 1 N ILE A2166 O ASN A2195 SHEET 4 B 6 GLY A2272 TYR A2274 1 O ILE A2273 N HIS A2167 SHEET 5 B 6 ILE A2315 VAL A2317 -1 O ILE A2315 N TYR A2274 SHEET 6 B 6 ILE A2294 GLY A2295 -1 N GLY A2295 O ALA A2316 SHEET 1 C 2 ILE A2280 GLN A2281 0 SHEET 2 C 2 VAL A2419 GLU A2420 -1 O GLU A2420 N ILE A2280 SHEET 1 D 2 PRO B2159 PRO B2161 0 SHEET 2 D 2 THR B2289 PRO B2291 -1 O PHE B2290 N GLU B2160 SHEET 1 E 6 VAL B2223 ASP B2227 0 SHEET 2 E 6 ASN B2195 TYR B2200 1 N ILE B2198 O ASN B2224 SHEET 3 E 6 ASN B2165 ILE B2169 1 N MSE B2168 O ILE B2199 SHEET 4 E 6 GLY B2272 TYR B2274 1 O ILE B2273 N HIS B2167 SHEET 5 E 6 ILE B2315 VAL B2317 -1 O ILE B2315 N TYR B2274 SHEET 6 E 6 ILE B2294 VAL B2296 -1 N GLY B2295 O ALA B2316 SHEET 1 F 2 ILE B2280 GLN B2281 0 SHEET 2 F 2 VAL B2419 GLU B2420 -1 O GLU B2420 N ILE B2280 LINK C HIS A2167 N MSE A2168 1555 1555 1.33 LINK C MSE A2168 N ILE A2169 1555 1555 1.32 LINK C PHE A2213 N MSE A2214 1555 1555 1.34 LINK C MSE A2214 N LEU A2215 1555 1555 1.34 LINK C VAL A2296 N MSE A2297 1555 1555 1.33 LINK C MSE A2297 N ARG A2298 1555 1555 1.33 LINK C HIS B2167 N MSE B2168 1555 1555 1.34 LINK C MSE B2168 N ILE B2169 1555 1555 1.31 LINK C PHE B2213 N MSE B2214 1555 1555 1.34 LINK C MSE B2214 N LEU B2215 1555 1555 1.33 LINK C VAL B2296 N MSE B2297 1555 1555 1.34 LINK C MSE B2297 N ARG B2298 1555 1555 1.34 LINK CA CA A2501 O1A UD1 A2502 1555 1555 2.34 LINK O1A UD1 B2501 CA CA B2502 1555 1555 2.61 LINK CA CA A2501 O2B UD1 A2502 1555 1555 2.65 LINK OD2 ASP A2276 CA CA A2501 1555 1555 2.66 LINK OD2 ASP B2276 CA CA B2502 1555 1555 2.77 LINK OD2 ASP A2278 CA CA A2501 1555 1555 2.91 LINK OD2 ASP B2278 CA CA B2502 1555 1555 2.97 LINK OD1 ASP A2278 CA CA A2501 1555 1555 2.97 LINK OD1 ASP B2278 CA CA B2502 1555 1555 3.08 LINK O1B UD1 B2501 CA CA B2502 1555 1555 3.09 LINK CA CA A2501 O HOH A2664 1555 1555 2.42 LINK CA CA B2502 O HOH B2704 1555 1555 2.77 CISPEP 1 THR A 2313 PRO A 2314 0 -11.82 CISPEP 2 THR B 2313 PRO B 2314 0 -11.02 SITE 1 AC1 4 ASP A2276 ASP A2278 UD1 A2502 HOH A2664 SITE 1 AC2 21 ILE A2169 TRP A2170 ILE A2171 TYR A2255 SITE 2 AC2 21 ALA A2256 SER A2259 ASP A2260 ARG A2263 SITE 3 AC2 21 TYR A2274 ASP A2276 ILE A2277 ASP A2278 SITE 4 AC2 21 TYR A2300 ASN A2312 PRO A2348 CA A2501 SITE 5 AC2 21 HOH A2649 HOH A2663 HOH A2665 HOH A2666 SITE 6 AC2 21 HOH A2694 SITE 1 AC3 20 HOH A2629 ILE B2169 TRP B2170 ILE B2171 SITE 2 AC3 20 TYR B2255 ALA B2256 SER B2259 ASP B2260 SITE 3 AC3 20 ARG B2263 TYR B2274 ASP B2276 ASP B2278 SITE 4 AC3 20 TYR B2300 ASN B2312 LEU B2343 PRO B2348 SITE 5 AC3 20 CA B2502 HOH B2609 HOH B2618 HOH B2677 SITE 1 AC4 4 ASP B2276 ASP B2278 UD1 B2501 HOH B2704 CRYST1 145.817 42.127 116.367 90.00 99.52 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006858 0.000000 0.001150 0.00000 SCALE2 0.000000 0.023738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008713 0.00000