HEADER TRANSFERASE 03-SEP-13 4MJ8 TITLE CRYSTAL STRUCTURE OF SPERMIDINE N-ACETYLTRANSFERASE FROM VIBRIO TITLE 2 CHOLERAE IN COMPLEX WITH POLYAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE N1-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 5 GENE: VC_A0947; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, SPERMIDINE, N-ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,M.L.KUHN, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 5 20-SEP-23 4MJ8 1 REMARK SEQADV REVDAT 4 15-NOV-17 4MJ8 1 REMARK REVDAT 3 19-MAR-14 4MJ8 1 JRNL REVDAT 2 05-MAR-14 4MJ8 1 TITLE REVDAT 1 25-SEP-13 4MJ8 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,M.L.KUHN, JRNL AUTH 2 W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF SPERMIDINE N-ACETYLTRANSFERASE FROM JRNL TITL 2 VIBRIO CHOLERAE IN COMPLEX WITH POLYAMINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.53000 REMARK 3 B22 (A**2) : -4.24000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4569 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4375 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6148 ; 1.853 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9987 ; 0.867 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 523 ; 3.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;31.331 ;23.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 794 ;10.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;13.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5269 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1223 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2074 ; 2.988 ; 2.949 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2073 ; 2.988 ; 2.949 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2603 ; 3.820 ; 4.397 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2604 ; 3.820 ; 4.397 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2495 ; 4.072 ; 3.393 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2496 ; 4.071 ; 3.395 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3546 ; 5.613 ; 4.927 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5413 ; 7.567 ;13.983 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5292 ; 7.546 ;13.801 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1909 -53.2711 31.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.0483 REMARK 3 T33: 0.1160 T12: 0.0426 REMARK 3 T13: 0.1525 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.3941 L22: 1.0321 REMARK 3 L33: 1.4341 L12: 0.3093 REMARK 3 L13: 0.2620 L23: -0.0910 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0458 S13: 0.0743 REMARK 3 S21: 0.4485 S22: 0.0375 S23: 0.3340 REMARK 3 S31: -0.1754 S32: -0.2306 S33: -0.0882 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 170 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2017 -33.2553 -3.1754 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.1258 REMARK 3 T33: 0.1191 T12: -0.1105 REMARK 3 T13: 0.0150 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.2091 L22: 1.9335 REMARK 3 L33: 1.6276 L12: -0.5976 REMARK 3 L13: -0.1500 L23: -0.0949 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.0325 S13: 0.1370 REMARK 3 S21: -0.0488 S22: -0.0588 S23: -0.3962 REMARK 3 S31: -0.4021 S32: 0.4517 S33: 0.0025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 173 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1937 -47.4793 28.2956 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1054 REMARK 3 T33: 0.1407 T12: -0.0768 REMARK 3 T13: -0.1025 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.1532 L22: 1.6477 REMARK 3 L33: 0.9167 L12: -0.3416 REMARK 3 L13: -0.3300 L23: 0.3425 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0887 S13: 0.0646 REMARK 3 S21: 0.3485 S22: -0.0110 S23: -0.4251 REMARK 3 S31: -0.1555 S32: 0.2726 S33: 0.0111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS HCL, 20% ETHANOL, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.72250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.59400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.72250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.59400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.72250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.59400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.49950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.72250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.59400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 46170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 80290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -135.44500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -135.44500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 SER C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 127 70.85 -114.83 REMARK 500 GLU B 37 113.08 -161.70 REMARK 500 ASN B 152 50.32 37.71 REMARK 500 ASN B 152 56.71 39.48 REMARK 500 LEU B 169 21.00 -75.59 REMARK 500 GLU C 37 113.44 -165.04 REMARK 500 ASN C 127 67.62 -112.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP01616 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 3EG7 RELATED DB: PDB REMARK 900 RELATED ID: 4JJX RELATED DB: PDB REMARK 900 RELATED ID: 4JLY RELATED DB: PDB REMARK 900 RELATED ID: 4K4L RELATED DB: PDB DBREF 4MJ8 A 1 173 UNP Q9KL03 Q9KL03_VIBCH 1 173 DBREF 4MJ8 B 1 173 UNP Q9KL03 Q9KL03_VIBCH 1 173 DBREF 4MJ8 C 1 173 UNP Q9KL03 Q9KL03_VIBCH 1 173 SEQADV 4MJ8 SER A -2 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ASN A -1 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ALA A 0 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 SER B -2 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ASN B -1 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ALA B 0 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 SER C -2 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ASN C -1 UNP Q9KL03 EXPRESSION TAG SEQADV 4MJ8 ALA C 0 UNP Q9KL03 EXPRESSION TAG SEQRES 1 A 176 SER ASN ALA MET ASN SER GLN LEU THR LEU ARG ALA LEU SEQRES 2 A 176 GLU ARG GLY ASP LEU ARG PHE ILE HIS ASN LEU ASN ASN SEQRES 3 A 176 ASN ARG ASN ILE MET SER TYR TRP PHE GLU GLU PRO TYR SEQRES 4 A 176 GLU SER PHE ASP GLU LEU GLU GLU LEU TYR ASN LYS HIS SEQRES 5 A 176 ILE HIS ASP ASN ALA GLU ARG ARG PHE VAL VAL GLU ASP SEQRES 6 A 176 ALA GLN LYS ASN LEU ILE GLY LEU VAL GLU LEU ILE GLU SEQRES 7 A 176 ILE ASN TYR ILE HIS ARG SER ALA GLU PHE GLN ILE ILE SEQRES 8 A 176 ILE ALA PRO GLU HIS GLN GLY LYS GLY PHE ALA ARG THR SEQRES 9 A 176 LEU ILE ASN ARG ALA LEU ASP TYR SER PHE THR ILE LEU SEQRES 10 A 176 ASN LEU HIS LYS ILE TYR LEU HIS VAL ALA VAL GLU ASN SEQRES 11 A 176 PRO LYS ALA VAL HIS LEU TYR GLU GLU CYS GLY PHE VAL SEQRES 12 A 176 GLU GLU GLY HIS LEU VAL GLU GLU PHE PHE ILE ASN GLY SEQRES 13 A 176 ARG TYR GLN ASP VAL LYS ARG MET TYR ILE LEU GLN SER SEQRES 14 A 176 LYS TYR LEU ASN ARG SER GLU SEQRES 1 B 176 SER ASN ALA MET ASN SER GLN LEU THR LEU ARG ALA LEU SEQRES 2 B 176 GLU ARG GLY ASP LEU ARG PHE ILE HIS ASN LEU ASN ASN SEQRES 3 B 176 ASN ARG ASN ILE MET SER TYR TRP PHE GLU GLU PRO TYR SEQRES 4 B 176 GLU SER PHE ASP GLU LEU GLU GLU LEU TYR ASN LYS HIS SEQRES 5 B 176 ILE HIS ASP ASN ALA GLU ARG ARG PHE VAL VAL GLU ASP SEQRES 6 B 176 ALA GLN LYS ASN LEU ILE GLY LEU VAL GLU LEU ILE GLU SEQRES 7 B 176 ILE ASN TYR ILE HIS ARG SER ALA GLU PHE GLN ILE ILE SEQRES 8 B 176 ILE ALA PRO GLU HIS GLN GLY LYS GLY PHE ALA ARG THR SEQRES 9 B 176 LEU ILE ASN ARG ALA LEU ASP TYR SER PHE THR ILE LEU SEQRES 10 B 176 ASN LEU HIS LYS ILE TYR LEU HIS VAL ALA VAL GLU ASN SEQRES 11 B 176 PRO LYS ALA VAL HIS LEU TYR GLU GLU CYS GLY PHE VAL SEQRES 12 B 176 GLU GLU GLY HIS LEU VAL GLU GLU PHE PHE ILE ASN GLY SEQRES 13 B 176 ARG TYR GLN ASP VAL LYS ARG MET TYR ILE LEU GLN SER SEQRES 14 B 176 LYS TYR LEU ASN ARG SER GLU SEQRES 1 C 176 SER ASN ALA MET ASN SER GLN LEU THR LEU ARG ALA LEU SEQRES 2 C 176 GLU ARG GLY ASP LEU ARG PHE ILE HIS ASN LEU ASN ASN SEQRES 3 C 176 ASN ARG ASN ILE MET SER TYR TRP PHE GLU GLU PRO TYR SEQRES 4 C 176 GLU SER PHE ASP GLU LEU GLU GLU LEU TYR ASN LYS HIS SEQRES 5 C 176 ILE HIS ASP ASN ALA GLU ARG ARG PHE VAL VAL GLU ASP SEQRES 6 C 176 ALA GLN LYS ASN LEU ILE GLY LEU VAL GLU LEU ILE GLU SEQRES 7 C 176 ILE ASN TYR ILE HIS ARG SER ALA GLU PHE GLN ILE ILE SEQRES 8 C 176 ILE ALA PRO GLU HIS GLN GLY LYS GLY PHE ALA ARG THR SEQRES 9 C 176 LEU ILE ASN ARG ALA LEU ASP TYR SER PHE THR ILE LEU SEQRES 10 C 176 ASN LEU HIS LYS ILE TYR LEU HIS VAL ALA VAL GLU ASN SEQRES 11 C 176 PRO LYS ALA VAL HIS LEU TYR GLU GLU CYS GLY PHE VAL SEQRES 12 C 176 GLU GLU GLY HIS LEU VAL GLU GLU PHE PHE ILE ASN GLY SEQRES 13 C 176 ARG TYR GLN ASP VAL LYS ARG MET TYR ILE LEU GLN SER SEQRES 14 C 176 LYS TYR LEU ASN ARG SER GLU HET SPM A 201 14 HET SPM A 202 18 HET EOH A 203 3 HET EOH A 204 3 HET SPM B 201 14 HET EOH B 202 3 HET SPM C 201 14 HET EOH C 202 3 HET EOH C 203 3 HET EOH C 204 3 HETNAM SPM SPERMINE HETNAM EOH ETHANOL FORMUL 4 SPM 4(C10 H26 N4) FORMUL 6 EOH 6(C2 H6 O) FORMUL 14 HOH *314(H2 O) HELIX 1 1 GLU A 11 GLY A 13 5 3 HELIX 2 2 ASP A 14 ASN A 23 1 10 HELIX 3 3 ASN A 24 SER A 29 1 6 HELIX 4 4 TYR A 30 PHE A 32 5 3 HELIX 5 5 SER A 38 HIS A 49 1 12 HELIX 6 6 PRO A 91 GLN A 94 5 4 HELIX 7 7 PHE A 98 ILE A 113 1 16 HELIX 8 8 ASN A 127 CYS A 137 1 11 HELIX 9 9 GLN A 165 ASN A 170 1 6 HELIX 10 10 GLU B 11 GLY B 13 5 3 HELIX 11 11 ASP B 14 ASN B 23 1 10 HELIX 12 12 ASN B 24 TYR B 30 1 7 HELIX 13 13 SER B 38 HIS B 49 1 12 HELIX 14 14 PRO B 91 GLN B 94 5 4 HELIX 15 15 GLY B 97 ILE B 113 1 17 HELIX 16 16 ASN B 127 CYS B 137 1 11 HELIX 17 17 GLN B 165 LEU B 169 1 5 HELIX 18 18 GLU C 11 GLY C 13 5 3 HELIX 19 19 ASP C 14 ASN C 23 1 10 HELIX 20 20 ASN C 24 TYR C 30 1 7 HELIX 21 21 SER C 38 HIS C 49 1 12 HELIX 22 22 PRO C 91 GLN C 94 5 4 HELIX 23 23 GLY C 97 ILE C 113 1 17 HELIX 24 24 ASN C 127 CYS C 137 1 11 HELIX 25 25 GLN C 165 ARG C 171 1 7 SHEET 1 A 7 THR A 6 ALA A 9 0 SHEET 2 A 7 ARG A 56 GLU A 61 -1 O VAL A 59 N ARG A 8 SHEET 3 A 7 LEU A 67 ASN A 77 -1 O ILE A 68 N VAL A 60 SHEET 4 A 7 SER A 82 ILE A 89 -1 O GLU A 84 N ILE A 74 SHEET 5 A 7 LYS A 118 ALA A 124 1 O TYR A 120 N PHE A 85 SHEET 6 A 7 ARG A 154 LEU A 164 -1 O LYS A 159 N VAL A 123 SHEET 7 A 7 VAL A 140 ILE A 151 -1 N PHE A 149 O GLN A 156 SHEET 1 B 7 THR B 6 ALA B 9 0 SHEET 2 B 7 ARG B 56 GLU B 61 -1 O VAL B 59 N ARG B 8 SHEET 3 B 7 LEU B 67 ASN B 77 -1 O ILE B 68 N VAL B 60 SHEET 4 B 7 SER B 82 ILE B 89 -1 O GLU B 84 N ILE B 74 SHEET 5 B 7 LYS B 118 ALA B 124 1 O TYR B 120 N PHE B 85 SHEET 6 B 7 ARG B 154 LEU B 164 -1 O LYS B 159 N VAL B 123 SHEET 7 B 7 VAL B 140 ILE B 151 -1 N GLU B 142 O ARG B 160 SHEET 1 C 7 THR C 6 ALA C 9 0 SHEET 2 C 7 ARG C 56 GLU C 61 -1 O GLU C 61 N THR C 6 SHEET 3 C 7 LEU C 67 ASN C 77 -1 O ILE C 68 N VAL C 60 SHEET 4 C 7 SER C 82 ILE C 89 -1 O GLU C 84 N ILE C 74 SHEET 5 C 7 LYS C 118 ALA C 124 1 O TYR C 120 N PHE C 85 SHEET 6 C 7 ARG C 154 LEU C 164 -1 O LYS C 159 N VAL C 123 SHEET 7 C 7 VAL C 140 ILE C 151 -1 N PHE C 149 O GLN C 156 SITE 1 AC1 15 ASN A 22 MET A 28 GLU A 33 GLU A 34 SITE 2 AC1 15 TYR A 36 GLU A 37 GLU A 41 HOH A 302 SITE 3 AC1 15 HOH A 326 HOH A 329 HIS B 49 ILE B 50 SITE 4 AC1 15 ASP B 52 GLU B 55 HOH B 361 SITE 1 AC2 10 TYR A 30 TRP A 31 GLU A 33 GLU A 84 SITE 2 AC2 10 PHE A 85 GLN A 86 ILE A 87 LEU A 121 SITE 3 AC2 10 HIS A 122 HOH A 381 SITE 1 AC3 2 HOH A 308 SER C 172 SITE 1 AC4 1 LYS A 48 SITE 1 AC5 14 ASN B 22 MET B 28 GLU B 33 GLU B 34 SITE 2 AC5 14 TYR B 36 GLU B 41 HOH B 301 HOH B 351 SITE 3 AC5 14 HOH B 404 HIS C 49 ILE C 50 ASP C 52 SITE 4 AC5 14 GLU C 55 HOH C 302 SITE 1 AC6 1 LYS B 48 SITE 1 AC7 15 HIS A 49 ILE A 50 ASP A 52 GLU A 55 SITE 2 AC7 15 HOH A 341 HOH A 347 ASN C 22 MET C 28 SITE 3 AC7 15 GLU C 33 GLU C 34 TYR C 36 GLU C 37 SITE 4 AC7 15 GLU C 41 HOH C 303 HOH C 394 SITE 1 AC8 2 TRP C 31 GLN C 86 CRYST1 74.999 135.445 141.188 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007083 0.00000