HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-SEP-13 4MJG TITLE CRYSTAL STRUCTURE OF A DUF4853 FAMILY PROTEIN (ACTODO_00621) FROM TITLE 2 ACTINOMYCES ODONTOLYTICUS ATCC 17982 AT 2.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOMYCES ODONTOLYTICUS; SOURCE 3 ORGANISM_TAXID: 411466; SOURCE 4 STRAIN: ATCC 17982; SOURCE 5 GENE: ACTODO_00621, ZP_02043769.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF16145 FAMILY, DUF4853, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION, STRUCTURAL GENOMICS UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4MJG 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4MJG 1 JRNL REVDAT 3 15-NOV-17 4MJG 1 REMARK REVDAT 2 24-DEC-14 4MJG 1 TITLE REVDAT 1 16-OCT-13 4MJG 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (ACTODO_00621) JRNL TITL 2 FROM ACTINOMYCES ODONTOLYTICUS ATCC 17982 AT 2.65 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 15135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -5.11000 REMARK 3 B12 (A**2) : 1.57000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.589 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2788 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2594 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3813 ; 1.023 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5998 ; 0.782 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 6.079 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;33.549 ;24.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;14.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;13.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3135 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 4.491 ;10.800 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1413 ; 4.487 ;10.795 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 7.081 ;20.221 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2020 23.9980 32.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0830 REMARK 3 T33: 0.1260 T12: 0.0072 REMARK 3 T13: 0.0098 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.5620 L22: 3.6211 REMARK 3 L33: 2.6828 L12: 0.9920 REMARK 3 L13: 0.2047 L23: -0.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.0878 S12: -0.0494 S13: 0.0693 REMARK 3 S21: -0.0464 S22: -0.1151 S23: -0.3233 REMARK 3 S31: 0.0271 S32: 0.3732 S33: 0.2030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): -42.2240 50.5390 57.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1255 REMARK 3 T33: 0.2002 T12: 0.1215 REMARK 3 T13: -0.0955 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.2556 L22: 2.6145 REMARK 3 L33: 2.6959 L12: 1.2156 REMARK 3 L13: 0.3433 L23: -0.3449 REMARK 3 S TENSOR REMARK 3 S11: -0.1431 S12: -0.1681 S13: 0.2202 REMARK 3 S21: 0.0436 S22: 0.1883 S23: -0.0711 REMARK 3 S31: 0.0032 S32: 0.1180 S33: -0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. CHLORIDE (CL),SULFATE (SO4) AND GLYCEROL (GOL) REMARK 3 MOLECULES FROM THE PURIFICATION/CRYSTALLIZATION/CRYOPROTECTION REMARK 3 SOLUTION ARE MODELED. 7. DUE TO STRONG ICE RINGS, REFLECTIONS REMARK 3 WERE OMITTED IN THE 3.91-3.86 AND 3.70-3.64 RESOLUTION SHELLS REMARK 3 LOWERING THE OVERALL COMPLETENESS TO 88.7%. THE NOMINAL REMARK 3 RESOLUTION OF THE RESULTING DATASET IS 2.80 A WITH 2358 OBSERVED REMARK 3 REFLECTIONS BETWEEN 2.80-2.65 (92.4% COMPLETE FOR THIS SHELL) REMARK 3 INCLUDED IN THE REFINEMENT. REMARK 4 REMARK 4 4MJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97941,0.97868 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.544 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81100 REMARK 200 R SYM FOR SHELL (I) : 0.81100 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4M AMMONIUM SULFATE, 0.1M BICINE PH REMARK 280 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.02933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.01467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.01467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.02933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 29 REMARK 465 LYS A 30 REMARK 465 SER A 31 REMARK 465 ARG A 32 REMARK 465 ASP A 33 REMARK 465 HIS A 211 REMARK 465 VAL A 212 REMARK 465 THR A 213 REMARK 465 PRO A 214 REMARK 465 GLN A 215 REMARK 465 SER A 216 REMARK 465 GLY A 217 REMARK 465 THR A 218 REMARK 465 GLN A 219 REMARK 465 SER A 220 REMARK 465 GLY A 221 REMARK 465 THR A 222 REMARK 465 GLN A 223 REMARK 465 SER A 224 REMARK 465 GLY A 225 REMARK 465 SER A 226 REMARK 465 GLY B 0 REMARK 465 ALA B 29 REMARK 465 LYS B 30 REMARK 465 SER B 31 REMARK 465 ARG B 32 REMARK 465 ASP B 33 REMARK 465 HIS B 211 REMARK 465 VAL B 212 REMARK 465 THR B 213 REMARK 465 PRO B 214 REMARK 465 GLN B 215 REMARK 465 SER B 216 REMARK 465 GLY B 217 REMARK 465 THR B 218 REMARK 465 GLN B 219 REMARK 465 SER B 220 REMARK 465 GLY B 221 REMARK 465 THR B 222 REMARK 465 GLN B 223 REMARK 465 SER B 224 REMARK 465 GLY B 225 REMARK 465 SER B 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 41.85 -107.07 REMARK 500 ASP A 172 66.42 -155.92 REMARK 500 PRO A 198 56.16 -63.99 REMARK 500 LEU A 200 -178.26 69.99 REMARK 500 GLU B 35 42.46 -107.04 REMARK 500 ASP B 172 66.90 -155.50 REMARK 500 LEU B 200 161.24 75.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418621 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 29-226 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4MJG A 29 226 UNP A7BAF7 A7BAF7_9ACTO 29 226 DBREF 4MJG B 29 226 UNP A7BAF7 A7BAF7_9ACTO 29 226 SEQADV 4MJG GLY A 0 UNP A7BAF7 EXPRESSION TAG SEQADV 4MJG GLY B 0 UNP A7BAF7 EXPRESSION TAG SEQRES 1 A 199 GLY ALA LYS SER ARG ASP ALA GLU PHE VAL PRO PHE PRO SEQRES 2 A 199 GLU ARG VAL SER ILE GLU GLU TYR ILE SER ARG GLN LEU SEQRES 3 A 199 PRO GLU ILE SER SER VAL ALA VAL PRO VAL ALA ALA GLU SEQRES 4 A 199 THR GLY GLY GLU LEU THR VAL MSE GLY LEU PRO TYR VAL SEQRES 5 A 199 GLN VAL CYS GLY THR GLY ASP THR GLN GLY TYR ARG VAL SEQRES 6 A 199 VAL GLY TYR THR THR VAL ALA PRO SER MSE SER PHE GLU SEQRES 7 A 199 ARG LEU GLU LYS LEU VAL THR GLU ASN LYS PRO ASP TRP SEQRES 8 A 199 ALA VAL ALA VAL GLN VAL ASP LYS GLN ILE ASP ARG ASP SEQRES 9 A 199 ALA THR ARG GLY ILE GLN LEU ILE ASP ASN TYR GLY GLY SEQRES 10 A 199 LEU VAL GLU PHE LYS PHE SER GLU ASP SER ILE ALA VAL SEQRES 11 A 199 ARG SER ARG SER ALA CYS LEU PRO THR ASN LYS PRO LEU SEQRES 12 A 199 ASP ASP PRO GLY GLN PHE VAL LEU PRO SER VAL GLU GLU SEQRES 13 A 199 ALA PHE PRO GLY MSE HIS VAL THR ILE SER ASP ASN THR SEQRES 14 A 199 ASN PRO ASP LEU HIS PRO VAL PRO THR LEU THR THR GLY SEQRES 15 A 199 ALA HIS VAL THR PRO GLN SER GLY THR GLN SER GLY THR SEQRES 16 A 199 GLN SER GLY SER SEQRES 1 B 199 GLY ALA LYS SER ARG ASP ALA GLU PHE VAL PRO PHE PRO SEQRES 2 B 199 GLU ARG VAL SER ILE GLU GLU TYR ILE SER ARG GLN LEU SEQRES 3 B 199 PRO GLU ILE SER SER VAL ALA VAL PRO VAL ALA ALA GLU SEQRES 4 B 199 THR GLY GLY GLU LEU THR VAL MSE GLY LEU PRO TYR VAL SEQRES 5 B 199 GLN VAL CYS GLY THR GLY ASP THR GLN GLY TYR ARG VAL SEQRES 6 B 199 VAL GLY TYR THR THR VAL ALA PRO SER MSE SER PHE GLU SEQRES 7 B 199 ARG LEU GLU LYS LEU VAL THR GLU ASN LYS PRO ASP TRP SEQRES 8 B 199 ALA VAL ALA VAL GLN VAL ASP LYS GLN ILE ASP ARG ASP SEQRES 9 B 199 ALA THR ARG GLY ILE GLN LEU ILE ASP ASN TYR GLY GLY SEQRES 10 B 199 LEU VAL GLU PHE LYS PHE SER GLU ASP SER ILE ALA VAL SEQRES 11 B 199 ARG SER ARG SER ALA CYS LEU PRO THR ASN LYS PRO LEU SEQRES 12 B 199 ASP ASP PRO GLY GLN PHE VAL LEU PRO SER VAL GLU GLU SEQRES 13 B 199 ALA PHE PRO GLY MSE HIS VAL THR ILE SER ASP ASN THR SEQRES 14 B 199 ASN PRO ASP LEU HIS PRO VAL PRO THR LEU THR THR GLY SEQRES 15 B 199 ALA HIS VAL THR PRO GLN SER GLY THR GLN SER GLY THR SEQRES 16 B 199 GLN SER GLY SER MODRES 4MJG MSE A 74 MET SELENOMETHIONINE MODRES 4MJG MSE A 102 MET SELENOMETHIONINE MODRES 4MJG MSE A 188 MET SELENOMETHIONINE MODRES 4MJG MSE B 74 MET SELENOMETHIONINE MODRES 4MJG MSE B 102 MET SELENOMETHIONINE MODRES 4MJG MSE B 188 MET SELENOMETHIONINE HET MSE A 74 8 HET MSE A 102 8 HET MSE A 188 8 HET MSE B 74 8 HET MSE B 102 8 HET MSE B 188 8 HET SO4 A 301 5 HET SO4 A 302 5 HET GOL A 303 6 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET CL B 304 1 HET CL B 305 1 HET GOL B 306 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 CL 2(CL 1-) FORMUL 12 HOH *7(H2 O) HELIX 1 1 PRO A 38 ARG A 42 5 5 HELIX 2 2 SER A 44 GLN A 52 1 9 HELIX 3 3 GLN A 52 VAL A 59 1 8 HELIX 4 4 ALA A 60 GLY A 68 1 9 HELIX 5 5 THR A 84 GLN A 88 5 5 HELIX 6 6 SER A 103 ASN A 114 1 12 HELIX 7 7 ASP A 172 PHE A 176 5 5 HELIX 8 8 SER A 180 PHE A 185 1 6 HELIX 9 9 PRO B 38 ARG B 42 5 5 HELIX 10 10 SER B 44 GLN B 52 1 9 HELIX 11 11 GLN B 52 VAL B 59 1 8 HELIX 12 12 ALA B 60 GLY B 68 1 9 HELIX 13 13 THR B 84 GLN B 88 5 5 HELIX 14 14 SER B 103 ASN B 114 1 12 HELIX 15 15 ASP B 172 PHE B 176 5 5 HELIX 16 16 SER B 180 PHE B 185 1 6 SHEET 1 A 8 ALA A 119 VAL A 124 0 SHEET 2 A 8 ARG A 134 ASP A 140 -1 O GLN A 137 N GLN A 123 SHEET 3 A 8 LEU A 145 PHE A 150 -1 O PHE A 150 N ARG A 134 SHEET 4 A 8 SER A 154 ARG A 160 -1 O ARG A 158 N GLU A 147 SHEET 5 A 8 THR A 96 PRO A 100 -1 N THR A 97 O VAL A 157 SHEET 6 A 8 LEU A 71 GLY A 75 -1 N THR A 72 O VAL A 98 SHEET 7 A 8 VAL A 203 THR A 208 -1 O LEU A 206 N LEU A 71 SHEET 8 A 8 MSE A 188 SER A 193 -1 N THR A 191 O THR A 205 SHEET 1 B 2 TYR A 78 CYS A 82 0 SHEET 2 B 2 GLY A 89 VAL A 93 -1 O ARG A 91 N GLN A 80 SHEET 1 C 8 ALA B 119 VAL B 124 0 SHEET 2 C 8 ARG B 134 ASP B 140 -1 O GLN B 137 N GLN B 123 SHEET 3 C 8 LEU B 145 PHE B 150 -1 O PHE B 150 N ARG B 134 SHEET 4 C 8 SER B 154 ARG B 160 -1 O ALA B 156 N LYS B 149 SHEET 5 C 8 THR B 96 PRO B 100 -1 N THR B 97 O VAL B 157 SHEET 6 C 8 LEU B 71 GLY B 75 -1 N THR B 72 O VAL B 98 SHEET 7 C 8 VAL B 203 THR B 208 -1 O LEU B 206 N LEU B 71 SHEET 8 C 8 MSE B 188 SER B 193 -1 N THR B 191 O THR B 205 SHEET 1 D 2 TYR B 78 CYS B 82 0 SHEET 2 D 2 GLY B 89 VAL B 93 -1 O ARG B 91 N GLN B 80 SSBOND 1 CYS A 82 CYS A 163 1555 1555 2.05 SSBOND 2 CYS B 82 CYS B 163 1555 1555 2.04 LINK C VAL A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N GLY A 75 1555 1555 1.33 LINK C SER A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N SER A 103 1555 1555 1.33 LINK C GLY A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N HIS A 189 1555 1555 1.33 LINK C VAL B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N GLY B 75 1555 1555 1.33 LINK C SER B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N SER B 103 1555 1555 1.33 LINK C GLY B 187 N MSE B 188 1555 1555 1.33 LINK C MSE B 188 N HIS B 189 1555 1555 1.34 SITE 1 AC1 4 ARG A 42 ARG A 91 ALA A 162 CYS A 163 SITE 1 AC2 6 GLN A 80 ARG A 158 ARG A 160 GLU B 66 SITE 2 AC2 6 THR B 67 ARG B 106 SITE 1 AC3 6 TYR A 48 GLN A 52 ILE A 56 ASP A 140 SITE 2 AC3 6 ASN A 141 TYR A 142 SITE 1 AC4 5 CYS A 82 GLY A 83 ARG A 91 SER B 103 SITE 2 AC4 5 ARG B 106 SITE 1 AC5 4 ARG B 42 ARG B 91 ALA B 162 CYS B 163 SITE 1 AC6 4 ASP B 129 ARG B 130 ALA B 132 HOH B 402 SITE 1 AC7 1 ARG B 134 SITE 1 AC8 1 ARG B 91 SITE 1 AC9 4 GLN B 52 ASP B 140 ASN B 141 TYR B 142 CRYST1 97.080 97.080 105.044 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010301 0.005947 0.000000 0.00000 SCALE2 0.000000 0.011894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009520 0.00000