HEADER RNA BINDING PROTEIN/INHIBITOR 04-SEP-13 4MK1 TITLE 5-BROMOPYRIDINE-2,3-DIOL BOUND TO INFLUENZA 2009 PH1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN, RNA BINDING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 28-FEB-24 4MK1 1 REMARK SEQADV LINK REVDAT 2 11-DEC-13 4MK1 1 JRNL REVDAT 1 25-SEP-13 4MK1 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3275 - 3.8462 1.00 2886 155 0.1719 0.1809 REMARK 3 2 3.8462 - 3.0531 1.00 2764 148 0.1772 0.2079 REMARK 3 3 3.0531 - 2.6673 1.00 2769 136 0.1809 0.2059 REMARK 3 4 2.6673 - 2.4235 1.00 2705 146 0.1722 0.2158 REMARK 3 5 2.4235 - 2.2498 1.00 2715 162 0.1761 0.1860 REMARK 3 6 2.2498 - 2.1171 1.00 2714 142 0.1632 0.1932 REMARK 3 7 2.1171 - 2.0111 1.00 2696 149 0.1816 0.2127 REMARK 3 8 2.0111 - 1.9236 0.99 2715 132 0.1948 0.1991 REMARK 3 9 1.9236 - 1.8495 0.97 2607 151 0.2254 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1734 REMARK 3 ANGLE : 1.150 2349 REMARK 3 CHIRALITY : 0.056 241 REMARK 3 PLANARITY : 0.007 295 REMARK 3 DIHEDRAL : 14.377 640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6370 18.6834 -18.5191 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.3533 REMARK 3 T33: 0.2135 T12: -0.0767 REMARK 3 T13: 0.0131 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 7.6580 L22: 5.5156 REMARK 3 L33: 5.4340 L12: 3.3447 REMARK 3 L13: -1.3620 L23: -2.2621 REMARK 3 S TENSOR REMARK 3 S11: -0.3559 S12: 0.6300 S13: -0.2279 REMARK 3 S21: -0.3217 S22: 0.2336 S23: -0.0012 REMARK 3 S31: 0.2150 S32: 0.0923 S33: 0.1137 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5061 12.7116 -0.7684 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2348 REMARK 3 T33: 0.2763 T12: -0.0656 REMARK 3 T13: -0.0141 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 5.8088 L22: 7.9805 REMARK 3 L33: 8.9247 L12: 2.7655 REMARK 3 L13: -0.5662 L23: -4.9294 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: -0.5505 S13: -0.6397 REMARK 3 S21: 0.1764 S22: -0.1355 S23: -0.1893 REMARK 3 S31: 0.4195 S32: -0.1898 S33: 0.2892 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4417 4.7721 0.6885 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.3027 REMARK 3 T33: 0.5863 T12: -0.0833 REMARK 3 T13: -0.1099 T23: 0.1087 REMARK 3 L TENSOR REMARK 3 L11: 1.4020 L22: 4.0791 REMARK 3 L33: 3.4240 L12: 0.5855 REMARK 3 L13: -1.2776 L23: -3.4699 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: -0.3208 S13: -0.9962 REMARK 3 S21: 0.2022 S22: -0.3357 S23: -0.6966 REMARK 3 S31: 0.3429 S32: 0.2106 S33: 0.1274 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5822 14.0849 -3.6307 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.2944 REMARK 3 T33: 0.3073 T12: -0.0307 REMARK 3 T13: -0.0248 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.5909 L22: 1.9652 REMARK 3 L33: 6.5628 L12: 1.0631 REMARK 3 L13: 1.1702 L23: 1.4726 REMARK 3 S TENSOR REMARK 3 S11: 0.3390 S12: -0.3028 S13: 0.2039 REMARK 3 S21: 0.2379 S22: -0.3904 S23: 0.4953 REMARK 3 S31: 0.2983 S32: -0.9141 S33: 0.0142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2093 26.5018 -1.2992 REMARK 3 T TENSOR REMARK 3 T11: 0.4826 T22: 0.3899 REMARK 3 T33: 0.5554 T12: 0.0427 REMARK 3 T13: -0.0233 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 7.8788 L22: 8.4952 REMARK 3 L33: 3.2415 L12: -0.7528 REMARK 3 L13: -0.6677 L23: -3.3124 REMARK 3 S TENSOR REMARK 3 S11: 0.1511 S12: 0.1162 S13: 1.2863 REMARK 3 S21: -0.0317 S22: -0.0597 S23: 1.0750 REMARK 3 S31: -0.6482 S32: -0.7087 S33: -0.1274 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3570 26.0343 -1.8664 REMARK 3 T TENSOR REMARK 3 T11: 0.3998 T22: 0.2542 REMARK 3 T33: 0.3286 T12: -0.1425 REMARK 3 T13: -0.0683 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.9125 L22: 1.8397 REMARK 3 L33: 5.3784 L12: 1.9061 REMARK 3 L13: -1.5786 L23: -0.7650 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1719 S13: 0.5187 REMARK 3 S21: -0.0391 S22: -0.0744 S23: 0.1030 REMARK 3 S31: -0.6475 S32: 0.5731 S33: 0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 40.5650 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.46600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.82750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.46600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.82750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.10600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.46600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.82750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.10600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.46600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.82750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.53 REMARK 500 O HOH A 475 O HOH A 489 2.13 REMARK 500 O ALA A 70 O HOH A 483 2.18 REMARK 500 OE2 GLU A 166 O HOH A 524 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 17.88 48.89 REMARK 500 THR A 162 -56.35 66.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.3 REMARK 620 3 GLU A 119 OE2 178.1 87.4 REMARK 620 4 ILE A 120 O 90.6 89.6 88.5 REMARK 620 5 27Y A 307 O01 89.1 174.7 89.3 94.4 REMARK 620 6 27Y A 307 O09 90.1 99.4 90.5 170.9 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 91.1 REMARK 620 3 27Y A 307 O09 97.7 87.0 REMARK 620 4 HOH A 427 O 87.8 93.2 174.5 REMARK 620 5 HOH A 491 O 177.4 87.6 84.5 90.0 REMARK 620 6 HOH A 534 O 89.6 179.0 93.6 86.1 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 27Y A 308 O09 106.5 REMARK 620 3 27Y A 308 O01 87.1 80.6 REMARK 620 4 27Y A 309 O01 154.6 98.7 93.9 REMARK 620 5 27Y A 309 O09 71.6 165.5 84.9 83.2 REMARK 620 6 HOH A 408 O 87.0 78.7 155.9 101.4 115.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 27Y A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 27Y A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 27Y A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M4Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4MK1 A 1 204 UNP M9V5A4 M9V5A4_9INFA 1 204 SEQADV 4MK1 MET A -36 UNP M9V5A4 INITIATING METHIONINE SEQADV 4MK1 ALA A -35 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -34 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -33 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -32 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -31 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -30 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -29 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 SER A -28 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 ARG A -27 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 ALA A -26 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 TRP A -25 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 ARG A -24 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -23 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 PRO A -22 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLN A -21 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 PHE A -20 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLY A -19 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLY A -18 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -17 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -16 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -15 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -14 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -13 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 HIS A -12 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 ALA A -11 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 LEU A -10 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLU A -9 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 VAL A -8 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 LEU A -7 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 PHE A -6 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLN A -5 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLY A -4 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 PRO A -3 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 LEU A -2 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 GLY A -1 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 SER A 0 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK1 VAL A 201 UNP M9V5A4 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET MN A 304 1 HET SO4 A 305 5 HET EDO A 306 10 HET 27Y A 307 9 HET 27Y A 308 9 HET 27Y A 309 9 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 27Y 5-BROMO-3-HYDROXYPYRIDIN-2(1H)-ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 4(MN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 EDO C2 H6 O2 FORMUL 8 27Y 3(C5 H4 BR N O2) FORMUL 11 HOH *134(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 LYS A 139 1 14 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.32 LINK NE2 HIS A 74 MN MN A 304 1555 1555 2.21 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.10 LINK OE1 GLU A 80 MN MN A 303 1555 1555 2.15 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.15 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.16 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.16 LINK O ILE A 120 MN MN A 301 1555 1555 2.15 LINK MN MN A 301 O01 27Y A 307 1555 1555 2.17 LINK MN MN A 301 O09 27Y A 307 1555 1555 2.24 LINK MN MN A 302 O09 27Y A 307 1555 1555 2.09 LINK MN MN A 302 O HOH A 427 1555 1555 2.20 LINK MN MN A 302 O HOH A 491 1555 1555 2.16 LINK MN MN A 302 O HOH A 534 1555 1555 2.17 LINK MN MN A 303 O09 27Y A 308 1555 1555 2.09 LINK MN MN A 303 O01 27Y A 308 1555 1555 2.18 LINK MN MN A 303 O01 27Y A 309 1555 1555 2.05 LINK MN MN A 303 O09 27Y A 309 1555 1555 2.18 LINK MN MN A 303 O HOH A 408 1555 1555 2.22 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 27Y A 307 SITE 1 AC2 6 GLU A 80 ASP A 108 27Y A 307 HOH A 427 SITE 2 AC2 6 HOH A 491 HOH A 534 SITE 1 AC3 4 GLU A 80 27Y A 308 27Y A 309 HOH A 408 SITE 1 AC4 1 HIS A 74 SITE 1 AC5 7 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC5 7 GLU A 166 ALA A 169 HOH A 413 SITE 1 AC6 6 ASN A 33 LYS A 34 ALA A 37 ARG A 124 SITE 2 AC6 6 SER A 194 HOH A 518 SITE 1 AC7 13 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 2 AC7 13 GLU A 119 ILE A 120 LYS A 134 MN A 301 SITE 3 AC7 13 MN A 302 HOH A 404 HOH A 491 HOH A 514 SITE 4 AC7 13 HOH A 534 SITE 1 AC8 12 ALA A 20 TYR A 24 GLU A 26 LYS A 34 SITE 2 AC8 12 ILE A 38 GLU A 80 MN A 303 27Y A 309 SITE 3 AC8 12 HOH A 408 HOH A 500 HOH A 502 HOH A 534 SITE 1 AC9 10 ALA A 20 GLU A 23 TYR A 24 GLU A 80 SITE 2 AC9 10 GLY A 81 ARG A 82 ASP A 83 MN A 303 SITE 3 AC9 10 27Y A 308 HOH A 529 CRYST1 88.932 101.655 66.212 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015103 0.00000