HEADER RNA BINDING PROTEIN/INHIBITOR 04-SEP-13 4MK2 TITLE 3-(5-HYDROXY-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)BENZONITRILE BOUND TO TITLE 2 INFLUENZA 2009 PH1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN, RNA BINDING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 28-FEB-24 4MK2 1 REMARK SEQADV LINK REVDAT 2 11-DEC-13 4MK2 1 JRNL REVDAT 1 25-SEP-13 4MK2 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1448) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 28.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2510 - 4.7544 0.97 2650 143 0.1758 0.1685 REMARK 3 2 4.7544 - 3.7746 1.00 2721 139 0.1350 0.1632 REMARK 3 3 3.7746 - 3.2978 1.00 2721 142 0.1535 0.1878 REMARK 3 4 3.2978 - 2.9963 1.00 2724 139 0.1660 0.2184 REMARK 3 5 2.9963 - 2.7816 1.00 2702 140 0.1570 0.1947 REMARK 3 6 2.7816 - 2.6177 1.00 2731 145 0.1632 0.2014 REMARK 3 7 2.6177 - 2.4866 1.00 2703 140 0.1562 0.1986 REMARK 3 8 2.4866 - 2.3784 1.00 2741 145 0.1612 0.1933 REMARK 3 9 2.3784 - 2.2868 1.00 2708 146 0.1610 0.2062 REMARK 3 10 2.2868 - 2.2079 1.00 2712 145 0.1622 0.2121 REMARK 3 11 2.2079 - 2.1389 1.00 2686 142 0.1667 0.1994 REMARK 3 12 2.1389 - 2.0777 1.00 2739 147 0.1902 0.2258 REMARK 3 13 2.0777 - 2.0230 1.00 2731 145 0.2119 0.2712 REMARK 3 14 2.0230 - 1.9737 1.00 2682 141 0.2220 0.2212 REMARK 3 15 1.9737 - 1.9288 1.00 2733 146 0.2293 0.2473 REMARK 3 16 1.9288 - 1.8878 1.00 2695 145 0.2611 0.2799 REMARK 3 17 1.8878 - 1.8500 1.00 2742 145 0.2822 0.2955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1727 REMARK 3 ANGLE : 1.136 2336 REMARK 3 CHIRALITY : 0.045 242 REMARK 3 PLANARITY : 0.005 295 REMARK 3 DIHEDRAL : 15.662 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5149 18.7370 -18.3006 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.2750 REMARK 3 T33: 0.1539 T12: -0.0717 REMARK 3 T13: 0.0150 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 6.5397 L22: 5.2154 REMARK 3 L33: 4.2106 L12: 2.7273 REMARK 3 L13: 0.1720 L23: -1.9709 REMARK 3 S TENSOR REMARK 3 S11: -0.2661 S12: 0.4840 S13: -0.2146 REMARK 3 S21: -0.3376 S22: 0.1541 S23: 0.0719 REMARK 3 S31: 0.1023 S32: 0.1686 S33: 0.0795 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3575 12.6292 -0.5899 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2076 REMARK 3 T33: 0.2484 T12: -0.0848 REMARK 3 T13: -0.0291 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 4.7031 L22: 4.3267 REMARK 3 L33: 3.8977 L12: 1.4376 REMARK 3 L13: -0.1224 L23: -0.7334 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.5088 S13: -0.5620 REMARK 3 S21: 0.1483 S22: -0.0871 S23: -0.1672 REMARK 3 S31: 0.5933 S32: -0.0558 S33: 0.0883 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3152 4.6449 0.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.3751 T22: 0.2648 REMARK 3 T33: 0.4847 T12: -0.0840 REMARK 3 T13: -0.0943 T23: 0.1118 REMARK 3 L TENSOR REMARK 3 L11: 1.7331 L22: 4.8302 REMARK 3 L33: 3.4042 L12: -0.2296 REMARK 3 L13: -0.7116 L23: -2.7037 REMARK 3 S TENSOR REMARK 3 S11: 0.2211 S12: -0.2646 S13: -0.7833 REMARK 3 S21: 0.1872 S22: -0.4242 S23: -0.6061 REMARK 3 S31: 0.6274 S32: 0.3716 S33: 0.1074 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4197 13.9330 -3.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.2294 REMARK 3 T33: 0.2549 T12: -0.0599 REMARK 3 T13: -0.0296 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.4328 L22: 2.1655 REMARK 3 L33: 5.8489 L12: 0.3549 REMARK 3 L13: 1.0658 L23: 1.4168 REMARK 3 S TENSOR REMARK 3 S11: 0.2167 S12: -0.2199 S13: 0.1392 REMARK 3 S21: 0.1448 S22: -0.3713 S23: 0.4810 REMARK 3 S31: 0.3984 S32: -0.7300 S33: 0.0855 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2335 29.7429 -3.1995 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.3133 REMARK 3 T33: 0.5709 T12: 0.0931 REMARK 3 T13: -0.0387 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.1793 L22: 6.1891 REMARK 3 L33: 9.5151 L12: 0.1895 REMARK 3 L13: -4.4754 L23: -1.8010 REMARK 3 S TENSOR REMARK 3 S11: 0.1720 S12: 0.2795 S13: 1.3573 REMARK 3 S21: -0.0720 S22: 0.0060 S23: 0.9112 REMARK 3 S31: -1.3164 S32: -0.6088 S33: -0.1723 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8515 22.9342 0.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.3293 REMARK 3 T33: 0.3641 T12: 0.0064 REMARK 3 T13: -0.0659 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 2.4478 L22: 8.1317 REMARK 3 L33: 8.4501 L12: 0.9341 REMARK 3 L13: -1.0855 L23: -2.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.1469 S12: 0.0754 S13: 0.5495 REMARK 3 S21: -0.3784 S22: 0.0784 S23: 1.2987 REMARK 3 S31: -0.4284 S32: -1.3623 S33: 0.0923 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7724 26.0104 -1.4656 REMARK 3 T TENSOR REMARK 3 T11: 0.3160 T22: 0.2511 REMARK 3 T33: 0.2483 T12: -0.1147 REMARK 3 T13: -0.0497 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.6224 L22: 1.2492 REMARK 3 L33: 3.9013 L12: 1.9648 REMARK 3 L13: -1.7079 L23: -0.5599 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0763 S13: 0.4182 REMARK 3 S21: -0.0717 S22: -0.0620 S23: 0.1443 REMARK 3 S31: -0.5730 S32: 0.2991 S33: 0.0492 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.84700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.71600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.84700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.71600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.06000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.84700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.71600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.06000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.84700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.71600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 588 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.60 REMARK 500 O ALA A 70 O HOH A 488 2.08 REMARK 500 O PHE A 150 NH1 ARG A 179 2.09 REMARK 500 O HOH A 455 O HOH A 515 2.17 REMARK 500 O HOH A 510 O HOH A 590 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 56 O HOH A 531 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -5.03 79.75 REMARK 500 LYS A 139 -116.80 57.25 REMARK 500 THR A 162 -55.46 68.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 24 OH REMARK 620 2 GLU A 80 OE1 111.4 REMARK 620 3 HOH A 430 O 120.6 108.4 REMARK 620 4 HOH A 574 O 155.8 77.9 74.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.5 REMARK 620 3 GLU A 119 OE2 176.3 88.3 REMARK 620 4 ILE A 120 O 87.2 90.5 90.3 REMARK 620 5 28B A 306 O01 86.4 101.0 95.5 167.2 REMARK 620 6 28B A 306 O04 88.1 175.6 89.4 93.2 75.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 90.2 REMARK 620 3 28B A 306 O01 91.0 87.7 REMARK 620 4 HOH A 423 O 90.3 91.4 178.5 REMARK 620 5 HOH A 430 O 85.0 175.2 92.7 88.3 REMARK 620 6 HOH A 500 O 175.5 90.9 84.7 94.1 93.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 28B A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M4Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4MK2 A 1 204 UNP M9V5A4 M9V5A4_9INFA 1 204 SEQADV 4MK2 MET A -36 UNP M9V5A4 INITIATING METHIONINE SEQADV 4MK2 ALA A -35 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -34 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -33 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -32 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -31 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -30 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -29 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 SER A -28 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 ARG A -27 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 ALA A -26 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 TRP A -25 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 ARG A -24 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -23 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 PRO A -22 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLN A -21 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 PHE A -20 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLY A -19 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLY A -18 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -17 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -16 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -15 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -14 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -13 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 HIS A -12 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 ALA A -11 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 LEU A -10 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLU A -9 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 VAL A -8 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 LEU A -7 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 PHE A -6 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLN A -5 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLY A -4 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 PRO A -3 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 LEU A -2 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 GLY A -1 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 SER A 0 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK2 VAL A 201 UNP M9V5A4 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET SO4 A 304 5 HET EDO A 305 10 HET 28B A 306 16 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 28B 3-(5-HYDROXY-6-OXO-1,6-DIHYDROPYRIDIN-3-YL)BENZONITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 3(MN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 EDO C2 H6 O2 FORMUL 7 28B C12 H8 N2 O2 FORMUL 8 HOH *214(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 GLY A 25 1 16 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 LYS A 139 1 14 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK OH TYR A 24 MN MN A 303 1555 1555 2.27 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.26 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.08 LINK OE1 GLU A 80 MN MN A 303 1555 1555 2.37 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.13 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.14 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.13 LINK O ILE A 120 MN MN A 301 1555 1555 2.15 LINK MN MN A 301 O01 28B A 306 1555 1555 2.19 LINK MN MN A 301 O04 28B A 306 1555 1555 2.20 LINK MN MN A 302 O01 28B A 306 1555 1555 2.22 LINK MN MN A 302 O HOH A 423 1555 1555 2.21 LINK MN MN A 302 O HOH A 430 1555 1555 2.20 LINK MN MN A 302 O HOH A 500 1555 1555 2.17 LINK MN MN A 303 O HOH A 430 1555 1555 2.42 LINK MN MN A 303 O HOH A 574 1555 1555 2.23 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 28B A 306 SITE 1 AC2 6 GLU A 80 ASP A 108 28B A 306 HOH A 423 SITE 2 AC2 6 HOH A 430 HOH A 500 SITE 1 AC3 5 TYR A 24 GLU A 80 28B A 306 HOH A 430 SITE 2 AC3 5 HOH A 574 SITE 1 AC4 7 ILE A 30 GLU A 31 THR A 32 ASN A 33 SITE 2 AC4 7 GLU A 165 GLU A 166 HOH A 410 SITE 1 AC5 5 ALA A 37 ARG A 124 SER A 194 28B A 306 SITE 2 AC5 5 HOH A 522 SITE 1 AC6 15 TYR A 24 LYS A 34 HIS A 41 GLU A 80 SITE 2 AC6 15 ASP A 108 GLU A 119 ILE A 120 LYS A 134 SITE 3 AC6 15 MN A 301 MN A 302 MN A 303 EDO A 305 SITE 4 AC6 15 HOH A 403 HOH A 430 HOH A 500 CRYST1 87.694 101.432 66.120 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015124 0.00000