HEADER RNA BINDING PROTEIN/INHIBITOR 04-SEP-13 4MK5 TITLE 6-(3-METHOXYPHENYL)PYRIDINE-2,3-DIOL BOUND TO INFLUENZA 2009 PH1N1 TITLE 2 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN, RNA BINDING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 28-FEB-24 4MK5 1 REMARK SEQADV LINK REVDAT 2 11-DEC-13 4MK5 1 JRNL REVDAT 1 25-SEP-13 4MK5 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1080 - 3.9506 1.00 2641 131 0.1657 0.1751 REMARK 3 2 3.9506 - 3.1365 1.00 2529 150 0.1679 0.1869 REMARK 3 3 3.1365 - 2.7402 1.00 2530 129 0.1726 0.1927 REMARK 3 4 2.7402 - 2.4898 1.00 2458 153 0.1748 0.1845 REMARK 3 5 2.4898 - 2.3114 1.00 2495 137 0.1821 0.2244 REMARK 3 6 2.3114 - 2.1751 1.00 2494 125 0.1777 0.1796 REMARK 3 7 2.1751 - 2.0662 0.99 2465 130 0.1928 0.2212 REMARK 3 8 2.0662 - 1.9763 0.99 2460 128 0.2179 0.2287 REMARK 3 9 1.9763 - 1.9002 0.98 2422 133 0.2458 0.2269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1741 REMARK 3 ANGLE : 1.310 2348 REMARK 3 CHIRALITY : 0.074 244 REMARK 3 PLANARITY : 0.009 300 REMARK 3 DIHEDRAL : 15.995 658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6356 18.8794 -18.1946 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.2917 REMARK 3 T33: 0.2161 T12: -0.0593 REMARK 3 T13: 0.0197 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 5.6767 L22: 3.7911 REMARK 3 L33: 3.5306 L12: 2.4675 REMARK 3 L13: -0.2037 L23: -1.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.2108 S12: 0.4082 S13: -0.2693 REMARK 3 S21: -0.2240 S22: 0.1047 S23: -0.0923 REMARK 3 S31: 0.2638 S32: 0.0917 S33: 0.0689 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8379 9.3755 1.2071 REMARK 3 T TENSOR REMARK 3 T11: 0.2896 T22: 0.2411 REMARK 3 T33: 0.3251 T12: -0.0632 REMARK 3 T13: -0.0466 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 3.5101 L22: 3.8885 REMARK 3 L33: 2.7130 L12: 1.0386 REMARK 3 L13: 1.0615 L23: -0.5947 REMARK 3 S TENSOR REMARK 3 S11: 0.2028 S12: -0.6008 S13: -0.7659 REMARK 3 S21: 0.4629 S22: -0.2459 S23: -0.3640 REMARK 3 S31: 0.4060 S32: 0.0065 S33: 0.4170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1324 10.2125 -6.8196 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.3970 REMARK 3 T33: 0.3199 T12: -0.1751 REMARK 3 T13: -0.0315 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.3940 L22: 1.0379 REMARK 3 L33: 5.6372 L12: 0.1268 REMARK 3 L13: -0.6047 L23: 1.2598 REMARK 3 S TENSOR REMARK 3 S11: 0.5799 S12: -0.2488 S13: -0.0938 REMARK 3 S21: 0.3986 S22: -0.5822 S23: 0.3840 REMARK 3 S31: 0.4990 S32: -1.6076 S33: 0.1707 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5925 22.6999 -0.5001 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2665 REMARK 3 T33: 0.2600 T12: 0.0208 REMARK 3 T13: -0.0131 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.3177 L22: 4.0082 REMARK 3 L33: 4.8339 L12: 2.0526 REMARK 3 L13: -0.9659 L23: -0.4325 REMARK 3 S TENSOR REMARK 3 S11: 0.2287 S12: -0.2158 S13: 0.4362 REMARK 3 S21: 0.3158 S22: -0.1782 S23: 0.3775 REMARK 3 S31: -0.6371 S32: -0.4883 S33: 0.0021 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1712 22.9039 -0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.3175 REMARK 3 T33: 0.4109 T12: -0.0077 REMARK 3 T13: -0.0057 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 4.8301 L22: 4.0329 REMARK 3 L33: 6.1077 L12: 0.2062 REMARK 3 L13: -1.8845 L23: -1.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.2748 S12: -0.0390 S13: 0.3645 REMARK 3 S21: 0.1709 S22: -0.2708 S23: 1.1077 REMARK 3 S31: 0.0380 S32: -1.0863 S33: -0.0781 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1019 26.1085 -1.4607 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.2006 REMARK 3 T33: 0.2084 T12: -0.0844 REMARK 3 T13: -0.0343 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.2482 L22: 1.1959 REMARK 3 L33: 4.8366 L12: 0.8969 REMARK 3 L13: -0.8906 L23: -0.5175 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.0733 S13: 0.2313 REMARK 3 S21: -0.0465 S22: -0.0753 S23: -0.0164 REMARK 3 S31: -0.5544 S32: 0.3564 S33: -0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.10300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.10300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.09750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.84150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.09750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.84150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.10300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.09750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.84150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.10300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.09750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.84150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: INFLUENZA A POLYMERASE PA SUBUNITS N-TERMINAL DOMAIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 560 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 151 OE1 GLU A 153 1.56 REMARK 500 O HOH A 547 O HOH A 548 1.85 REMARK 500 O HOH A 523 O HOH A 571 2.03 REMARK 500 OE2 GLU A 166 O HOH A 467 2.08 REMARK 500 O HOH A 532 O HOH A 534 2.09 REMARK 500 O GLU A 56 O HOH A 550 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 539 O HOH A 539 4555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 129.55 -37.88 REMARK 500 THR A 162 -55.65 69.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.8 REMARK 620 3 GLU A 119 OE2 177.0 87.0 REMARK 620 4 ILE A 120 O 86.0 91.9 91.5 REMARK 620 5 28A A 306 O01 87.8 173.7 90.6 94.0 REMARK 620 6 28A A 306 O16 88.5 98.2 93.6 168.9 76.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 87.2 REMARK 620 3 28A A 306 O16 93.2 87.2 REMARK 620 4 HOH A 426 O 87.7 91.1 178.1 REMARK 620 5 HOH A 432 O 91.1 177.8 91.6 90.1 REMARK 620 6 HOH A 491 O 177.5 90.4 87.2 91.8 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 HOH A 515 O 109.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 28A A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M4Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB DBREF 4MK5 A 1 204 UNP M9V5A4 M9V5A4_9INFA 1 204 SEQADV 4MK5 MET A -36 UNP M9V5A4 INITIATING METHIONINE SEQADV 4MK5 ALA A -35 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -34 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -33 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -32 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -31 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -30 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -29 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 SER A -28 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 ARG A -27 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 ALA A -26 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 TRP A -25 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 ARG A -24 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -23 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 PRO A -22 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLN A -21 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 PHE A -20 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLY A -19 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLY A -18 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -17 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -16 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -15 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -14 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -13 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 HIS A -12 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 ALA A -11 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 LEU A -10 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLU A -9 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 VAL A -8 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 LEU A -7 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 PHE A -6 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLN A -5 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLY A -4 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 PRO A -3 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 LEU A -2 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 GLY A -1 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 SER A 0 UNP M9V5A4 EXPRESSION TAG SEQADV 4MK5 VAL A 201 UNP M9V5A4 ILE 201 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET SO4 A 304 5 HET EDO A 305 10 HET 28A A 306 16 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 28A 3-HYDROXY-6-(3-METHOXYPHENYL)PYRIDIN-2(5H)-ONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 3(MN 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 EDO C2 H6 O2 FORMUL 7 28A C12 H11 N O3 FORMUL 8 HOH *171(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 TYR A 24 1 15 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 LYS A 139 1 14 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.23 LINK OE2 GLU A 80 MN MN A 302 1555 1555 2.07 LINK OE1 GLU A 80 MN MN A 303 1555 1555 2.26 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.12 LINK O ILE A 120 MN MN A 301 1555 1555 2.15 LINK MN MN A 301 O01 28A A 306 1555 1555 2.18 LINK MN MN A 301 O16 28A A 306 1555 1555 2.23 LINK MN MN A 302 O16 28A A 306 1555 1555 2.16 LINK MN MN A 302 O HOH A 426 1555 1555 2.21 LINK MN MN A 302 O HOH A 432 1555 1555 2.23 LINK MN MN A 302 O HOH A 491 1555 1555 2.17 LINK MN MN A 303 O HOH A 515 1555 1555 1.97 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 28A A 306 SITE 1 AC2 6 GLU A 80 ASP A 108 28A A 306 HOH A 426 SITE 2 AC2 6 HOH A 432 HOH A 491 SITE 1 AC3 3 GLU A 80 28A A 306 HOH A 515 SITE 1 AC4 7 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC4 7 GLU A 166 HOH A 412 HOH A 527 SITE 1 AC5 6 ASN A 33 LYS A 34 ALA A 37 ARG A 124 SITE 2 AC5 6 SER A 194 HOH A 564 SITE 1 AC6 15 GLU A 26 LYS A 34 ILE A 38 HIS A 41 SITE 2 AC6 15 GLU A 80 ASP A 108 GLU A 119 ILE A 120 SITE 3 AC6 15 LYS A 134 MN A 301 MN A 302 MN A 303 SITE 4 AC6 15 HOH A 404 HOH A 432 HOH A 491 CRYST1 88.195 101.683 66.206 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015104 0.00000